CmoCh12G011320 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G011320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribose-5-phosphate isomerase
Location	Cmo_Chr12: 10327124 .. 10327990 (-)
RNA-Seq Expression	CmoCh12G011320
Synteny	CmoCh12G011320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCTCTCTCTCATCTCCCCTCCTTCTCTCTCTTCCTCCCGCCATGTTTCCTCCATAGCCAACCTTCTTCTCCGATCACCAAAGCCTCTTAATCTTTCCGCTCATAACCACCACCGCTGCCGTCCTCTCTCCGTTCAAGCCCGCTCCGTCTCCACTCTCACTCAAGACGACCTCAAGAAGCTTGCTGCCGACAAGGCTGTTGAGTATGTCAAGAGTGGAATGGTTCTCGGCCTCGGCACTGGCTCCACCGCCGCTTTCGTTGTCGCTAAGATTGGCGAACTTCTCAAGAGTAATCAATTGAGTGACATTGTTGGAATCCCTACCTCCAAGCGGACGGAGGAGCAAGCTAGGGCATTAGGAATTCCTCTCTCTGTTCTTGATGATCATCCGCATCTCGATTTGGCTATCGATGGCGCTGATGAGGTCGATCCAGATCTGAATCTCGTTAAAGGCCGCGGCGGCGCTTTGTTGCGTGAGAAAATGGTTGAGGCTGCTTCCGATAAATTCGTCGTCGTCGTCGATGATACTAAATTAGTTGACGGCCTCGGCGGAAGCGGTCTCGCGATGCCGGTGGAAGTCGTTCAGTTCTGCTGGAAATACAATTTGGTGAGGCTTCAAGACCTATTCAAGGACGAAGATTGCGAGGCCAAGCTCCGATTGGACGCCGATGGGAAGCCATACGTCACCGATAATTCAAATTACATAGTCGATTTATATTTCAAGACTCCAATCAAAGACGGATTAGCCGCCGGAAAAGAGATTTCAGCGTTTGAAGGAGTGGTGGAGCACGGGCTCTTCTTGGACATGGCGACCGCCGTAATCATCGCCGGAAAAGATGGAATCGACATCAAGACCAAATGA

mRNA sequence

ATGGCTTCCCTCTCTCTCATCTCCCCTCCTTCTCTCTCTTCCTCCCGCCATGTTTCCTCCATAGCCAACCTTCTTCTCCGATCACCAAAGCCTCTTAATCTTTCCGCTCATAACCACCACCGCTGCCGTCCTCTCTCCGTTCAAGCCCGCTCCGTCTCCACTCTCACTCAAGACGACCTCAAGAAGCTTGCTGCCGACAAGGCTGTTGAGTATGTCAAGAGTGGAATGGTTCTCGGCCTCGGCACTGGCTCCACCGCCGCTTTCGTTGTCGCTAAGATTGGCGAACTTCTCAAGAGTAATCAATTGAGTGACATTGTTGGAATCCCTACCTCCAAGCGGACGGAGGAGCAAGCTAGGGCATTAGGAATTCCTCTCTCTGTTCTTGATGATCATCCGCATCTCGATTTGGCTATCGATGGCGCTGATGAGGTCGATCCAGATCTGAATCTCGTTAAAGGCCGCGGCGGCGCTTTGTTGCGTGAGAAAATGGTTGAGGCTGCTTCCGATAAATTCGTCGTCGTCGTCGATGATACTAAATTAGTTGACGGCCTCGGCGGAAGCGGTCTCGCGATGCCGGTGGAAGTCGTTCAGTTCTGCTGGAAATACAATTTGGTGAGGCTTCAAGACCTATTCAAGGACGAAGATTGCGAGGCCAAGCTCCGATTGGACGCCGATGGGAAGCCATACGTCACCGATAATTCAAATTACATAGTCGATTTATATTTCAAGACTCCAATCAAAGACGGATTAGCCGCCGGAAAAGAGATTTCAGCGTTTGAAGGAGTGGTGGAGCACGGGCTCTTCTTGGACATGGCGACCGCCGTAATCATCGCCGGAAAAGATGGAATCGACATCAAGACCAAATGA

Coding sequence (CDS)

ATGGCTTCCCTCTCTCTCATCTCCCCTCCTTCTCTCTCTTCCTCCCGCCATGTTTCCTCCATAGCCAACCTTCTTCTCCGATCACCAAAGCCTCTTAATCTTTCCGCTCATAACCACCACCGCTGCCGTCCTCTCTCCGTTCAAGCCCGCTCCGTCTCCACTCTCACTCAAGACGACCTCAAGAAGCTTGCTGCCGACAAGGCTGTTGAGTATGTCAAGAGTGGAATGGTTCTCGGCCTCGGCACTGGCTCCACCGCCGCTTTCGTTGTCGCTAAGATTGGCGAACTTCTCAAGAGTAATCAATTGAGTGACATTGTTGGAATCCCTACCTCCAAGCGGACGGAGGAGCAAGCTAGGGCATTAGGAATTCCTCTCTCTGTTCTTGATGATCATCCGCATCTCGATTTGGCTATCGATGGCGCTGATGAGGTCGATCCAGATCTGAATCTCGTTAAAGGCCGCGGCGGCGCTTTGTTGCGTGAGAAAATGGTTGAGGCTGCTTCCGATAAATTCGTCGTCGTCGTCGATGATACTAAATTAGTTGACGGCCTCGGCGGAAGCGGTCTCGCGATGCCGGTGGAAGTCGTTCAGTTCTGCTGGAAATACAATTTGGTGAGGCTTCAAGACCTATTCAAGGACGAAGATTGCGAGGCCAAGCTCCGATTGGACGCCGATGGGAAGCCATACGTCACCGATAATTCAAATTACATAGTCGATTTATATTTCAAGACTCCAATCAAAGACGGATTAGCCGCCGGAAAAGAGATTTCAGCGTTTGAAGGAGTGGTGGAGCACGGGCTCTTCTTGGACATGGCGACCGCCGTAATCATCGCCGGAAAAGATGGAATCGACATCAAGACCAAATGA

Protein sequence

MASLSLISPPSLSSSRHVSSIANLLLRSPKPLNLSAHNHHRCRPLSVQARSVSTLTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRTEEQARALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNSNYIVDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK

Homology

[Close]

BLAST of CmoCh12G011320 vs. ExPASy Swiss-Prot
Match: Q9S726 (Probable ribose-5-phosphate isomerase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPI3 PE=1 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 4.2e-105
Identity = 201/289 (69.55%), Postives = 235/289 (81.31%), Query Frame = 0


Query: 1   MASLSLISPPSLSSSRHVSSIANLLLRSPK-PLNLSAHNHHRCRPLSVQARSVSTLTQDD 60
           MASLS +S             ++L LR+P   L  +  +       SV+A+SV+ L+QDD
Sbjct: 1   MASLSFVSS------------SHLTLRTPSIALRSTGSSPRTSVSFSVKAQSVA-LSQDD 60

Query: 61  LKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRTEEQAR 120
           LKKLAA+KAVE +K GMVLGLGTGSTAAF V +IG+LL S +L DIVGIPTSKRTEEQAR
Sbjct: 61  LKKLAAEKAVEAIKPGMVLGLGTGSTAAFAVDQIGKLLSSGELYDIVGIPTSKRTEEQAR 120

Query: 121 ALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTK 180
           +LGIPL  LD HP +DLAIDGADEVDP+L+LVKGRGGALLREKMVEA +DKF+VV DDTK
Sbjct: 121 SLGIPLVGLDTHPRIDLAIDGADEVDPNLDLVKGRGGALLREKMVEAVADKFIVVADDTK 180

Query: 181 LVDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNSNYIVD 240
           LV GLGGSGLAMPVEVVQFCW +NL+RLQDLFK+  CE+KLR+D DGKPYVTDNSNYI+D
Sbjct: 181 LVTGLGGSGLAMPVEVVQFCWNFNLIRLQDLFKEFGCESKLRVDGDGKPYVTDNSNYIID 240

Query: 241 LYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 289
           LYFKTP+KDG AA KEI  F+GVVEHGLFL MAT+VIIAGK+G+++ TK
Sbjct: 241 LYFKTPLKDGFAAAKEIGKFQGVVEHGLFLGMATSVIIAGKNGVEVMTK 276

[Close]

BLAST of CmoCh12G011320 vs. ExPASy Swiss-Prot
Match: Q9ZU38 (Probable ribose-5-phosphate isomerase 2 OS=Arabidopsis thaliana OX=3702 GN=RPI2 PE=1 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 3.4e-78
Identity = 148/234 (63.25%), Postives = 183/234 (78.21%), Query Frame = 0


Query: 55  LTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRT 114
           LTQD+LK++AA KAVE+V+SGMVLGLGTGSTA   V +IGELL+  +L +IVGIPTSK+T
Sbjct: 31  LTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKT 90

Query: 115 EEQARALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVV 174
           +EQA +LGIPLS LD HP +DL+IDGADEVDP LNLVKGRGG+LLREKM+E AS KFVV+
Sbjct: 91  QEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASKKFVVI 150

Query: 175 VDDTKLVDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNS 234
           VDD+K+V  +GGS LA+PVE+V FCWK+   +L+ L +   CEA LRL   GK +VTDN 
Sbjct: 151 VDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLRLGEKGKAFVTDNG 210

Query: 235 NYIVDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 289
           NYIVD++ +  + D  A    I    GVVEHG+FLDMA+ VIIAG+ G+ IK K
Sbjct: 211 NYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGELGVKIKNK 264

[Close]

BLAST of CmoCh12G011320 vs. ExPASy Swiss-Prot
Match: Q9C998 (Probable ribose-5-phosphate isomerase 1 OS=Arabidopsis thaliana OX=3702 GN=RPI1 PE=1 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.4e-76
Identity = 148/245 (60.41%), Postives = 185/245 (75.51%), Query Frame = 0


Query: 49  ARSVSTLTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGI 108
           A  +S LTQ++LKK+AA KAVE+V+SGMV+GLGTGSTA   VA+I ELL+  +L DI+GI
Sbjct: 21  APPLSNLTQEELKKIAAYKAVEFVESGMVIGLGTGSTAKHAVARISELLREGKLKDIIGI 80

Query: 109 PTSKRTEEQARALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAAS 168
           PTS  T EQA +LGIPLS LD HP +DL+IDGADEVDP LNLVKGRGG+LLREKM+E AS
Sbjct: 81  PTSTTTHEQAVSLGIPLSDLDSHPVVDLSIDGADEVDPALNLVKGRGGSLLREKMIEGAS 140

Query: 169 DKFVVVVDDTKLVDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRL-----D 228
            KFVV+VD++KLV  +GGSGLA+PVEVV FC  +   +L++LF+D  C AKLR+      
Sbjct: 141 KKFVVIVDESKLVKYIGGSGLAVPVEVVPFCCDFTRGKLEELFRDSGCVAKLRMKIGSNG 200

Query: 229 ADGKPYVTDNSNYIVDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGI 288
            +  P VTDN NY+VDLY +  I D   A + I  F GVVEHG+FL MAT +I+AGK G+
Sbjct: 201 EEAAPAVTDNRNYVVDLYLERDIGDLEVASEAILRFPGVVEHGMFLGMATTLIVAGKFGV 260

[Close]

BLAST of CmoCh12G011320 vs. ExPASy Swiss-Prot
Match: Q2JSC9 (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=rpiA PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 4.5e-54
Identity = 115/228 (50.44%), Postives = 159/228 (69.74%), Query Frame = 0


Query: 58  DDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRTEEQ 117
           D+LK+ AA  A + V+SGMV+GLGTGSTAAF V  + + ++   L   +G+PTS+RT EQ
Sbjct: 5   DELKQAAAQAAAQKVQSGMVVGLGTGSTAAFAVGALAQRMQKEGL-QFIGVPTSERTAEQ 64

Query: 118 ARALGIPLSVLDDHPHLDLAIDGADEVD-PDLNLVKGRGGALLREKMVEAASDKFVVVVD 177
           AR+LGIPL+ L++ P LDLAIDGADE++   LNL+KG GGALLREK+VEA++ + +++ D
Sbjct: 65  ARSLGIPLATLEEQPRLDLAIDGADEIEVGSLNLIKGAGGALLREKLVEASAAELIIIAD 124

Query: 178 DTKLVDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNSNY 237
            +K V  L G+   +PVEVV+F WK  L R++ L     C+A LR  A+G PY+TD  +Y
Sbjct: 125 ASKKVAHL-GTRFPVPVEVVRFGWKTTLARVEAL----GCQAVLRRTAEGDPYLTDEQHY 184

Query: 238 IVDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGID 285
           I+D  F  PI +     +++    GVVEHGLF+ MAT  IIAG +GI+
Sbjct: 185 ILDCQF-GPIANPAKLAEQLKGTVGVVEHGLFIGMATEAIIAGPEGIE 225

[Close]

BLAST of CmoCh12G011320 vs. ExPASy Swiss-Prot
Match: B8FL28 (Ribose-5-phosphate isomerase A OS=Desulfatibacillum aliphaticivorans OX=218208 GN=rpiA PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.7e-53
Identity = 118/228 (51.75%), Postives = 154/228 (67.54%), Query Frame = 0


Query: 56  TQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRTE 115
           +QD LKK AA+KAVEY++SGMV+GLG+GSTA F +  I  L+K  +L DIVGIP+S  TE
Sbjct: 3   SQDALKKQAAEKAVEYLESGMVVGLGSGSTATFAIHAIARLMKEGKLKDIVGIPSSTPTE 62

Query: 116 EQARALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVV 175
           E AR+LGIPL   ++H  +D+ IDGADEVDPDLNL+KG GGALLREK+V  A+ K +++V
Sbjct: 63  EVARSLGIPLVGFEEHAVIDVTIDGADEVDPDLNLIKGGGGALLREKVVAQATKKNIIIV 122

Query: 176 DDTKLVDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNSN 235
           D++K+ D L G+  A+PVEVV F        L+ L      +  +R +  GK + TDN N
Sbjct: 123 DESKISDKL-GTIFALPVEVVPFATASETRFLESL----GAKVTVRENQLGKAFKTDNHN 182

Query: 236 YIVDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGI 284
            I+D  F  P+ D +  G  +S   GVVEHGLFL     VI+AG DGI
Sbjct: 183 RILDADF-GPMDDAVKIGMALSQRAGVVEHGLFLGTTALVIVAGADGI 224

[Close]

BLAST of CmoCh12G011320 vs. ExPASy TrEMBL
Match: A0A6J1FBW8 (Ribose-5-phosphate isomerase OS=Cucurbita moschata OX=3662 GN=LOC111444014 PE=3 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 1.2e-155
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0


Query: 1   MASLSLISPPSLSSSRHVSSIANLLLRSPKPLNLSAHNHHRCRPLSVQARSVSTLTQDDL 60
           MASLSLISPPSLSSSRHVSSIANLLLRSPKPLNLSAHNHHRCRPLSVQARSVSTLTQDDL
Sbjct: 1   MASLSLISPPSLSSSRHVSSIANLLLRSPKPLNLSAHNHHRCRPLSVQARSVSTLTQDDL 60

Query: 61  KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRTEEQARA 120
           KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRTEEQARA
Sbjct: 61  KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRTEEQARA 120

Query: 121 LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKL 180
           LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKL
Sbjct: 121 LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKL 180

Query: 181 VDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNSNYIVDL 240
           VDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNSNYIVDL
Sbjct: 181 VDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNSNYIVDL 240

Query: 241 YFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 289
           YFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK
Sbjct: 241 YFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 288

[Close]

BLAST of CmoCh12G011320 vs. ExPASy TrEMBL
Match: A0A6J1HPY9 (Ribose-5-phosphate isomerase OS=Cucurbita maxima OX=3661 GN=LOC111465624 PE=3 SV=1)

HSP 1 Score: 550.8 bits (1418), Expect = 3.3e-153
Identity = 283/288 (98.26%), Postives = 287/288 (99.65%), Query Frame = 0


Query: 1   MASLSLISPPSLSSSRHVSSIANLLLRSPKPLNLSAHNHHRCRPLSVQARSVSTLTQDDL 60
           MASLSLISPPSLSSS HVSSIANL+LRSPKPLNLSA+NHHRCRPLS+QARSVSTLTQDDL
Sbjct: 1   MASLSLISPPSLSSSCHVSSIANLILRSPKPLNLSANNHHRCRPLSIQARSVSTLTQDDL 60

Query: 61  KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRTEEQARA 120
           KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRTEEQARA
Sbjct: 61  KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRTEEQARA 120

Query: 121 LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKL 180
           LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVE+ASDKFVVVVDDTKL
Sbjct: 121 LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVESASDKFVVVVDDTKL 180

Query: 181 VDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNSNYIVDL 240
           VDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNSNYIVDL
Sbjct: 181 VDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNSNYIVDL 240

Query: 241 YFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 289
           YFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK
Sbjct: 241 YFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 288

[Close]

BLAST of CmoCh12G011320 vs. ExPASy TrEMBL
Match: A0A6J1CN30 (Ribose-5-phosphate isomerase OS=Momordica charantia OX=3673 GN=LOC111012997 PE=3 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 2.6e-150
Identity = 279/288 (96.88%), Postives = 284/288 (98.61%), Query Frame = 0


Query: 1   MASLSLISPPSLSSSRHVSSIANLLLRSPKPLNLSAHNHHRCRPLSVQARSVSTLTQDDL 60
           MASLSLISPPSLSSSRHVSSIANLLLRSPKPLNLSAHN H CRPLSV ARSVSTLTQDDL
Sbjct: 1   MASLSLISPPSLSSSRHVSSIANLLLRSPKPLNLSAHNPHHCRPLSVHARSVSTLTQDDL 60

Query: 61  KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRTEEQARA 120
           KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLK+N+LSDIVGIPTSKRTEEQARA
Sbjct: 61  KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKTNELSDIVGIPTSKRTEEQARA 120

Query: 121 LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKL 180
           LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKL
Sbjct: 121 LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKL 180

Query: 181 VDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNSNYIVDL 240
           V+GLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDE CEAKLRLDADGKPYVTDNSNYIVDL
Sbjct: 181 VNGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEGCEAKLRLDADGKPYVTDNSNYIVDL 240

Query: 241 YFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 289
           YF++PIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK
Sbjct: 241 YFQSPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 288

[Close]

BLAST of CmoCh12G011320 vs. ExPASy TrEMBL
Match: A0A6J1G4S7 (Ribose-5-phosphate isomerase OS=Cucurbita moschata OX=3662 GN=LOC111450781 PE=3 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 1.5e-145
Identity = 274/288 (95.14%), Postives = 279/288 (96.88%), Query Frame = 0


Query: 1   MASLSLISPPSLSSSRHVSSIANLLLRSPKPLNLSAHNHHRCRPLSVQARSVSTLTQDDL 60
           MASLS ISPPSLSSSRHVSSIANLLLRSPK +NLSAH    CRPLSVQARSVSTLTQDDL
Sbjct: 1   MASLSFISPPSLSSSRHVSSIANLLLRSPKSINLSAH----CRPLSVQARSVSTLTQDDL 60

Query: 61  KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRTEEQARA 120
           KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQL DIVGIPTSKRTEEQAR+
Sbjct: 61  KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLRDIVGIPTSKRTEEQARS 120

Query: 121 LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKL 180
           LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVD+TKL
Sbjct: 121 LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDETKL 180

Query: 181 VDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNSNYIVDL 240
           VDGLGGSGLAMPVEVVQFCWK+NLVRLQDLFKDE CEAKLRL+ADGKPYVTDNSNYIVDL
Sbjct: 181 VDGLGGSGLAMPVEVVQFCWKHNLVRLQDLFKDEGCEAKLRLEADGKPYVTDNSNYIVDL 240

Query: 241 YFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 289
           YFKTPIKDGLAAGKEISAFEGVVEHGLFLDMAT VIIAGKDGIDIKTK
Sbjct: 241 YFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATVVIIAGKDGIDIKTK 284

[Close]

BLAST of CmoCh12G011320 vs. ExPASy TrEMBL
Match: A0A6J1KAK9 (Ribose-5-phosphate isomerase OS=Cucurbita maxima OX=3661 GN=LOC111493733 PE=3 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 5.7e-145
Identity = 274/288 (95.14%), Postives = 279/288 (96.88%), Query Frame = 0


Query: 1   MASLSLISPPSLSSSRHVSSIANLLLRSPKPLNLSAHNHHRCRPLSVQARSVSTLTQDDL 60
           MASLS ISPPSLSSSRHVSSIA LLLRSPK +NLSA    RCRPLSVQARSVSTLTQDDL
Sbjct: 1   MASLSFISPPSLSSSRHVSSIAKLLLRSPKSINLSA----RCRPLSVQARSVSTLTQDDL 60

Query: 61  KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRTEEQARA 120
           KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQL DIVGIPTSKRTEEQAR+
Sbjct: 61  KKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLRDIVGIPTSKRTEEQARS 120

Query: 121 LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKL 180
           LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVD+TKL
Sbjct: 121 LGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDETKL 180

Query: 181 VDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNSNYIVDL 240
           VDGLGGSGLAMPVEVVQFCWK+NLVRLQDLFKDE CEAKLRL+ADGKPYVTDNSNYIVDL
Sbjct: 181 VDGLGGSGLAMPVEVVQFCWKHNLVRLQDLFKDEGCEAKLRLEADGKPYVTDNSNYIVDL 240

Query: 241 YFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 289
           YFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK
Sbjct: 241 YFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 284

[Close]

BLAST of CmoCh12G011320 vs. TAIR 10
Match: AT3G04790.1 (Ribose 5-phosphate isomerase, type A protein )

HSP 1 Score: 382.5 bits (981), Expect = 3.0e-106
Identity = 201/289 (69.55%), Postives = 235/289 (81.31%), Query Frame = 0


Query: 1   MASLSLISPPSLSSSRHVSSIANLLLRSPK-PLNLSAHNHHRCRPLSVQARSVSTLTQDD 60
           MASLS +S             ++L LR+P   L  +  +       SV+A+SV+ L+QDD
Sbjct: 1   MASLSFVSS------------SHLTLRTPSIALRSTGSSPRTSVSFSVKAQSVA-LSQDD 60

Query: 61  LKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRTEEQAR 120
           LKKLAA+KAVE +K GMVLGLGTGSTAAF V +IG+LL S +L DIVGIPTSKRTEEQAR
Sbjct: 61  LKKLAAEKAVEAIKPGMVLGLGTGSTAAFAVDQIGKLLSSGELYDIVGIPTSKRTEEQAR 120

Query: 121 ALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTK 180
           +LGIPL  LD HP +DLAIDGADEVDP+L+LVKGRGGALLREKMVEA +DKF+VV DDTK
Sbjct: 121 SLGIPLVGLDTHPRIDLAIDGADEVDPNLDLVKGRGGALLREKMVEAVADKFIVVADDTK 180

Query: 181 LVDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNSNYIVD 240
           LV GLGGSGLAMPVEVVQFCW +NL+RLQDLFK+  CE+KLR+D DGKPYVTDNSNYI+D
Sbjct: 181 LVTGLGGSGLAMPVEVVQFCWNFNLIRLQDLFKEFGCESKLRVDGDGKPYVTDNSNYIID 240

Query: 241 LYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 289
           LYFKTP+KDG AA KEI  F+GVVEHGLFL MAT+VIIAGK+G+++ TK
Sbjct: 241 LYFKTPLKDGFAAAKEIGKFQGVVEHGLFLGMATSVIIAGKNGVEVMTK 276

[Close]

BLAST of CmoCh12G011320 vs. TAIR 10
Match: AT2G01290.1 (ribose-5-phosphate isomerase 2 )

HSP 1 Score: 293.1 bits (749), Expect = 2.4e-79
Identity = 148/234 (63.25%), Postives = 183/234 (78.21%), Query Frame = 0


Query: 55  LTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRT 114
           LTQD+LK++AA KAVE+V+SGMVLGLGTGSTA   V +IGELL+  +L +IVGIPTSK+T
Sbjct: 31  LTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKT 90

Query: 115 EEQARALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVV 174
           +EQA +LGIPLS LD HP +DL+IDGADEVDP LNLVKGRGG+LLREKM+E AS KFVV+
Sbjct: 91  QEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASKKFVVI 150

Query: 175 VDDTKLVDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRLDADGKPYVTDNS 234
           VDD+K+V  +GGS LA+PVE+V FCWK+   +L+ L +   CEA LRL   GK +VTDN 
Sbjct: 151 VDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLRLGEKGKAFVTDNG 210

Query: 235 NYIVDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 289
           NYIVD++ +  + D  A    I    GVVEHG+FLDMA+ VIIAG+ G+ IK K
Sbjct: 211 NYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGELGVKIKNK 264

[Close]

BLAST of CmoCh12G011320 vs. TAIR 10
Match: AT1G71100.1 (Ribose 5-phosphate isomerase, type A protein )

HSP 1 Score: 287.0 bits (733), Expect = 1.7e-77
Identity = 148/245 (60.41%), Postives = 185/245 (75.51%), Query Frame = 0


Query: 49  ARSVSTLTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGI 108
           A  +S LTQ++LKK+AA KAVE+V+SGMV+GLGTGSTA   VA+I ELL+  +L DI+GI
Sbjct: 21  APPLSNLTQEELKKIAAYKAVEFVESGMVIGLGTGSTAKHAVARISELLREGKLKDIIGI 80

Query: 109 PTSKRTEEQARALGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAAS 168
           PTS  T EQA +LGIPLS LD HP +DL+IDGADEVDP LNLVKGRGG+LLREKM+E AS
Sbjct: 81  PTSTTTHEQAVSLGIPLSDLDSHPVVDLSIDGADEVDPALNLVKGRGGSLLREKMIEGAS 140

Query: 169 DKFVVVVDDTKLVDGLGGSGLAMPVEVVQFCWKYNLVRLQDLFKDEDCEAKLRL-----D 228
            KFVV+VD++KLV  +GGSGLA+PVEVV FC  +   +L++LF+D  C AKLR+      
Sbjct: 141 KKFVVIVDESKLVKYIGGSGLAVPVEVVPFCCDFTRGKLEELFRDSGCVAKLRMKIGSNG 200

Query: 229 ADGKPYVTDNSNYIVDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGI 288
            +  P VTDN NY+VDLY +  I D   A + I  F GVVEHG+FL MAT +I+AGK G+
Sbjct: 201 EEAAPAVTDNRNYVVDLYLERDIGDLEVASEAILRFPGVVEHGMFLGMATTLIVAGKFGV 260

[Close]

BLAST of CmoCh12G011320 vs. TAIR 10
Match: AT5G44520.1 (NagB/RpiA/CoA transferase-like superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 3.2e-23
Identity = 69/221 (31.22%), Postives = 113/221 (51.13%), Query Frame = 0


Query: 71  YVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLSDIVGIPTSKRTEEQARALGIPLSVLDD 130
           YVKSGM++GLG+G  + F +  +G+ L S  L ++VG+P S R+  +A   GIPL    D
Sbjct: 51  YVKSGMIIGLGSGEASDFAIRYLGQQLGSGSLHNVVGVPMSARSASEAAKYGIPLEYYRD 110

Query: 131 HPHLDLAIDGADEVDPD-LNLVKGRGGA------LLREKMVEAASDKFVVVVDDTKLVDG 190
              +D A   AD V+ + L  V GR  +      +L++K +   +D+ V ++ + +   G
Sbjct: 111 GVQIDFAFHDADAVEENTLIAVIGRRRSSQEDDYILKQKSIVKVADEAVFMIKEEQYKAG 170

Query: 191 LGGSGLAMPVEVVQFCWKYNLVRLQDLF-KDEDCEAKLRLDADGK-----PYVTDNSNYI 250
           L GS   +PV V    W      + DL+  D +   +  ++ +G      P VT + + I
Sbjct: 171 LEGS---IPVLVQSLNWLAIAEEIDDLYLGDAEVWRRASVENEGPLGGDFPIVTSDGHNI 230

Query: 251 VDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIA 279
           +D+ F TPI+        +   +GVV+HGL +     V+IA
Sbjct: 231 LDVIFTTPIRSLADLATSLDKIDGVVDHGLIIKTRCTVVIA 268

The following BLAST results are available for this feature:

BLAST of CmoCh12G011320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S726	4.2e-105	69.55	Probable ribose-5-phosphate isomerase 3, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9ZU38	3.4e-78	63.25	Probable ribose-5-phosphate isomerase 2 OS=Arabidopsis thaliana OX=3702 GN=RPI2 ...	[more]
Q9C998	2.4e-76	60.41	Probable ribose-5-phosphate isomerase 1 OS=Arabidopsis thaliana OX=3702 GN=RPI1 ...	[more]
Q2JSC9	4.5e-54	50.44	Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 ...	[more]
B8FL28	1.7e-53	51.75	Ribose-5-phosphate isomerase A OS=Desulfatibacillum aliphaticivorans OX=218208 G...	[more]

BLAST of CmoCh12G011320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBW8	1.2e-155	100.00	Ribose-5-phosphate isomerase OS=Cucurbita moschata OX=3662 GN=LOC111444014 PE=3 ...	[more]
A0A6J1HPY9	3.3e-153	98.26	Ribose-5-phosphate isomerase OS=Cucurbita maxima OX=3661 GN=LOC111465624 PE=3 SV...	[more]
A0A6J1CN30	2.6e-150	96.88	Ribose-5-phosphate isomerase OS=Momordica charantia OX=3673 GN=LOC111012997 PE=3...	[more]
A0A6J1G4S7	1.5e-145	95.14	Ribose-5-phosphate isomerase OS=Cucurbita moschata OX=3662 GN=LOC111450781 PE=3 ...	[more]
A0A6J1KAK9	5.7e-145	95.14	Ribose-5-phosphate isomerase OS=Cucurbita maxima OX=3661 GN=LOC111493733 PE=3 SV...	[more]

BLAST of CmoCh12G011320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04790.1	3.0e-106	69.55	Ribose 5-phosphate isomerase, type A protein	[more]
AT2G01290.1	2.4e-79	63.25	ribose-5-phosphate isomerase 2	[more]
AT1G71100.1	1.7e-77	60.41	Ribose 5-phosphate isomerase, type A protein	[more]
AT5G44520.1	3.2e-23	31.22	NagB/RpiA/CoA transferase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.260		coord: 183..266 e-value: 1.3E-79 score: 268.5
None	No IPR available	GENE3D	3.40.50.1360		coord: 60..282 e-value: 1.3E-79 score: 268.5
None	No IPR available	PANTHER	PTHR43748	RIBOSE-5-PHOSPHATE ISOMERASE 3, CHLOROPLASTIC-RELATED	coord: 29..288
None	No IPR available	PANTHER	PTHR43748:SF3	RIBOSE-5-PHOSPHATE ISOMERASE 3, CHLOROPLASTIC-RELATED	coord: 29..288
None	No IPR available	SUPERFAMILY	75445	D-ribose-5-phosphate isomerase (RpiA), lid domain	coord: 189..269
IPR004788	Ribose 5-phosphate isomerase, type A	PFAM	PF06026	Rib_5-P_isom_A	coord: 106..282 e-value: 3.4E-61 score: 205.9
IPR004788	Ribose 5-phosphate isomerase, type A	TIGRFAM	TIGR00021	TIGR00021	coord: 60..283 e-value: 6.7E-78 score: 259.0
IPR004788	Ribose 5-phosphate isomerase, type A	CDD	cd01398	RPI_A	coord: 60..279 e-value: 4.32281E-101 score: 292.839
IPR020672	Ribose-5-phosphate isomerase, type A, subgroup	HAMAP	MF_00170	Rib_5P_isom_A	coord: 57..286 score: 30.665504
IPR037171	NagB/RpiA transferase-like	SUPERFAMILY	100950	NagB/RpiA/CoA transferase-like	coord: 56..239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G011320.1	CmoCh12G011320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009052	pentose-phosphate shunt, non-oxidative branch
molecular_function	GO:0004751	ribose-5-phosphate isomerase activity