CmoCh12G011010 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G011010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor bHLH94-like
Location	Cmo_Chr12: 10070288 .. 10072470 (+)
RNA-Seq Expression	CmoCh12G011010
Synteny	CmoCh12G011010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGTCCTTTTTCCCTTCTTTCTCTTCCTCCTTCACGTGCAACATTCTGTAGATTTGTTCATCAAAACCCTTTAAAAACCCCATTTTTCTCATCATTTTCCATCTTTTTCAAATGGGTTTCACTTAAAATCAGTGATTTTGATCCAAAATCAAGAGAAAAATGGCATTAGAAGCTGTTGTTTTCTCTCAAGATCTTTACTCCTTGTTTGCTGGAGGCCTCAGCTTTGAATATCCTCAAATCCCTCATGATTTTCCCGAGAAACAAACAGAAAATCCGCCATTGGAGCTCGAATCAACAACACCAAACCCAGTTAAGCCAAGAAAACGACGACCCAAATCCCGCAAGAACAAACAAGAAATCGAGAATCAAAGAATGACCCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAATATCTCTCTGTTCTTCGTTCTTTAATGCCAGATTCATATATTCAAAGAGTATCTTTCATTTTCCTTCATTTTCTTTCATTTTCCTTTTGATTTTCCTTTTGATTTTCCTTCTATCCAAACAGATTTCGAAATGGGTTCTTGTTATTTCAGGGAGATCAAGCTTCAATCGTTGGTGGAGCTATAAATTTCGTTAAGGAGTTAGAACAACAAGTTCAGTTTCTCTCAACAGATTCAAGTTCTTGTTCTTCTTGTTCTTCTTCATGTTCTTCATCTTCACAAACTCAGAGCTCCTCCATTGCTGATATTGAAGTAACAATGGTGGAAAATCATGCTAATTTGAAAATCAGATCAAAAAAACGACCAAAACAGGTCTTGAAAATTGTAGCTGGATTGCAAGCTCTGTTCCTCTCTGTTCTTCATCTCAATATCTCAACGATGAACCAAGTTGTTCATTACTGTCTCAGTGTTAAGGTTAGCCTATCGTATCACTGTGAAGAGTCGTTATTTCTAACCTGGTATCAAAGTCATGCTCTAAACTTAGCCAGGTCAATAGAATCCTTAGCAGTCATGACTATCGAATAAAGGGTGTACTTTGTTCGAGAATTCTAGAGGAGGAGTCGAGCCTCGATTAAGTGGGAGGTTGTTTGAGGGCTCCCATAGATCTCAGGGGAGGCTCTATAGTGTACTTTGTTGGAGAAGAGGATTGTTTGTTAATTTAGGGAATGATCATGGATTTACGAGTAAGGTTTCCATTGATATGAAGCCTTTTGGGAAGCCCAGAAGCAAAGAAATGAGAGCTTAGCTCAAAGTGGACAATATCATACCATTGTGGAGATTCGTAGTTTCTAACATGGTGTCAAAGTCATGCCCTTAATTTAGTCATGTCAATAGAATTCTCATATGTCGAACAAAGAAGTCGTTAGCCTAAAAAATGTGTACTTTGTTCGAGGACTTTAGAGAAGGAGTCGAGCCTCGATGAAGAGGAAGCTGTTTGAGGGCTCCATAGGCCTCCGGTGAGGCTCTATAGTGTACTTTATTTGAGGGAAGGATCGTTGAGGATTGTCCCGCATTGGCTAATTTAGAGAATAATCATGGGTTTATAAGAAATACATTTTTATAAGTACGAGGTCTTTTGGGGAAACACAAAACAAATTCGTTGTTTGAGAGCTTCATAGGCCTCAAGGGAGGCTTTATAGTGTACTTTGTTCGAGGGGGGTTCTAGAGAAGGAGTCGAACCTAGGGGAGGTTGTTCGAGGGCTCCATAGGCCTCAGGAGAGACTCTATACTTTTATGTTCAAAGTGGACAATATCGTATCATTACGGAGATTCGTGATTCCTAACCTAGTAAAGATTCATTTTTTTAATGTTTTTTGAAATGGGTTTATGTTTTTTTGGTTAAAAAAACGCTTGGATTTGTTGTTTGTAGGTTGAAGATGACTGCAAGCTGAGCTCTGTTGATGAAATTGCTTGTGCTCTACATCAGTTGCTTAGTAGAATCGAAGAGGAATCTGTTATGAACTGATAATTTGTGAAATTTGGTGTTGTTTTTGGATTGAACATTGTGTTCTAAGCTCAGTTCTTTCAATTTTTATGTTTAATTTCTGAAGAATTTGTAAATTTAATCAGTGGGTTTGTTCTTCGATGTTCTTGGAAGAAGGGAAAAAAAGCAGTTTTTCTCTGCAAATCTCCATGAAAAAAGGAGTTTGAATTGAAATTTTAAGGTCTGATTCAAATCTGAAAAGTGCCTTTTGGTTAAATGCTT

mRNA sequence

TATGTCCTTTTTCCCTTCTTTCTCTTCCTCCTTCACGTGCAACATTCTGTAGATTTGTTCATCAAAACCCTTTAAAAACCCCATTTTTCTCATCATTTTCCATCTTTTTCAAATGGGTTTCACTTAAAATCAGTGATTTTGATCCAAAATCAAGAGAAAAATGGCATTAGAAGCTGTTGTTTTCTCTCAAGATCTTTACTCCTTGTTTGCTGGAGGCCTCAGCTTTGAATATCCTCAAATCCCTCATGATTTTCCCGAGAAACAAACAGAAAATCCGCCATTGGAGCTCGAATCAACAACACCAAACCCAGTTAAGCCAAGAAAACGACGACCCAAATCCCGCAAGAACAAACAAGAAATCGAGAATCAAAGAATGACCCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAATATCTCTCTGTTCTTCGTTCTTTAATGCCAGATTCATATATTCAAAGAGGAGATCAAGCTTCAATCGTTGGTGGAGCTATAAATTTCGTTAAGGAGTTAGAACAACAAGTTCAGTTTCTCTCAACAGATTCAAGTTCTTGTTCTTCTTGTTCTTCTTCATGTTCTTCATCTTCACAAACTCAGAGCTCCTCCATTGCTGATATTGAAGTAACAATGGTGGAAAATCATGCTAATTTGAAAATCAGATCAAAAAAACGACCAAAACAGGTCTTGAAAATTGTAGCTGGATTGCAAGCTCTGTTCCTCTCTGTTCTTCATCTCAATATCTCAACGATGAACCAAGTTGTTCATTACTGTCTCAGTGTTAAGGTTGAAGATGACTGCAAGCTGAGCTCTGTTGATGAAATTGCTTGTGCTCTACATCAGTTGCTTAGTAGAATCGAAGAGGAATCTGTTATGAACTGATAATTTGTGAAATTTGGTGTTGTTTTTGGATTGAACATTGTGTTCTAAGCTCAGTTCTTTCAATTTTTATGTTTAATTTCTGAAGAATTTGTAAATTTAATCAGTGGGTTTGTTCTTCGATGTTCTTGGAAGAAGGGAAAAAAAGCAGTTTTTCTCTGCAAATCTCCATGAAAAAAGGAGTTTGAATTGAAATTTTAAGGTCTGATTCAAATCTGAAAAGTGCCTTTTGGTTAAATGCTT

Coding sequence (CDS)

ATGGCATTAGAAGCTGTTGTTTTCTCTCAAGATCTTTACTCCTTGTTTGCTGGAGGCCTCAGCTTTGAATATCCTCAAATCCCTCATGATTTTCCCGAGAAACAAACAGAAAATCCGCCATTGGAGCTCGAATCAACAACACCAAACCCAGTTAAGCCAAGAAAACGACGACCCAAATCCCGCAAGAACAAACAAGAAATCGAGAATCAAAGAATGACCCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAATATCTCTCTGTTCTTCGTTCTTTAATGCCAGATTCATATATTCAAAGAGGAGATCAAGCTTCAATCGTTGGTGGAGCTATAAATTTCGTTAAGGAGTTAGAACAACAAGTTCAGTTTCTCTCAACAGATTCAAGTTCTTGTTCTTCTTGTTCTTCTTCATGTTCTTCATCTTCACAAACTCAGAGCTCCTCCATTGCTGATATTGAAGTAACAATGGTGGAAAATCATGCTAATTTGAAAATCAGATCAAAAAAACGACCAAAACAGGTCTTGAAAATTGTAGCTGGATTGCAAGCTCTGTTCCTCTCTGTTCTTCATCTCAATATCTCAACGATGAACCAAGTTGTTCATTACTGTCTCAGTGTTAAGGTTGAAGATGACTGCAAGCTGAGCTCTGTTGATGAAATTGCTTGTGCTCTACATCAGTTGCTTAGTAGAATCGAAGAGGAATCTGTTATGAACTGA

Protein sequence

MALEAVVFSQDLYSLFAGGLSFEYPQIPHDFPEKQTENPPLELESTTPNPVKPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVGGAINFVKELEQQVQFLSTDSSSCSSCSSSCSSSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKIVAGLQALFLSVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIEEESVMN

Homology

[Close]

BLAST of CmoCh12G011010 vs. ExPASy Swiss-Prot
Match: Q9SK91 (Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2)

HSP 1 Score: 189.9 bits (481), Expect = 3.4e-47
Identity = 113/221 (51.13%), Postives = 156/221 (70.59%), Query Frame = 0


Query: 41  LELESTTPNPVKPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSY 100
           +++ES  P   + ++RR ++ KNK+EIENQRMTHIAVERNRRKQMNEYL+VLRSLMP SY
Sbjct: 84  IDVESHPPPQHRRKRRRTRNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSY 143

Query: 101 IQRGDQASIVGGAINFVKELEQQVQFLS-----------------------TDSSSCSSC 160
            QRGDQASIVGGAIN+VKELE  +Q +                        TD  S    
Sbjct: 144 AQRGDQASIVGGAINYVKELEHILQSMEPKRTRTHDPKGDKTSTSSLVGPFTDFFSFPQY 203

Query: 161 SSSCSSSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKIVAGLQALFLSVLHLNIS 220
           S+  SS     SSS A+IEVT+ E+HAN+KI +KK+P+Q+LK++  LQ+L L++LHLN++
Sbjct: 204 STKSSSDVPESSSSPAEIEVTVAESHANIKIMTKKKPRQLLKLITSLQSLRLTLLHLNVT 263

Query: 221 TMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIEEES 239
           T++  + Y +SV+VE+  +L++VD+IA AL+Q + RI+EE+
Sbjct: 264 TLHNSILYSISVRVEEGSQLNTVDDIATALNQTIRRIQEET 304

[Close]

BLAST of CmoCh12G011010 vs. ExPASy Swiss-Prot
Match: Q9C7T4 (Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.9e-46
Identity = 124/268 (46.27%), Postives = 174/268 (64.93%), Query Frame = 0


Query: 8   FSQDLYSLFAGGLSFEYP------QIPHDFP-----EKQTENPPLELESTTPNPVKPRKR 67
           F+ + Y+   G  S +Y       Q P D P     + +++ PP ++ +      + ++R
Sbjct: 53  FASNNYNGRTGDYSDDYNYNEEDLQWPRDLPYGSAVDTESQPPPSDVAA---GGGRRKRR 112

Query: 68  RPKSRKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVGGAINF 127
           R +S KNK+EIENQRMTHIAVERNRRKQMNEYL+VLRSLMP  Y QRGDQASIVGGAIN+
Sbjct: 113 RTRSSKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQASIVGGAINY 172

Query: 128 VKELEQQVQFLST-------------DSSSCSSCSSSCSSS-------------SQTQSS 187
           +KELE  +Q +               D +  +S SSS   S             S   + 
Sbjct: 173 LKELEHHLQSMEPPVKTATEDTGAGHDQTKTTSASSSGPFSDFFAFPQYSNRPTSAAAAE 232

Query: 188 SIADIEVTMVENHANLKIRSKKRPKQVLKIVAGLQALFLSVLHLNISTMNQVVHYCLSVK 239
            +A+IEVTMVE+HA+LKI +KKRP+Q+LK+V+ +Q+L L++LHLN++T +  V Y +SVK
Sbjct: 233 GMAEIEVTMVESHASLKILAKKRPRQLLKLVSSIQSLRLTLLHLNVTTRDDSVLYSISVK 292

[Close]

BLAST of CmoCh12G011010 vs. ExPASy Swiss-Prot
Match: Q9M128 (Transcription factor bHLH57 OS=Arabidopsis thaliana OX=3702 GN=BHLH57 PE=1 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.2e-41
Identity = 107/236 (45.34%), Postives = 156/236 (66.10%), Query Frame = 0


Query: 30  DFPEK--QTENPPLELESTTPNPVKPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNE 89
           D PEK  +TEN  + ++       K +++R ++ KNK E+ENQRMTHIAVERNRR+QMNE
Sbjct: 77  DDPEKDPRTENGAVTVKE------KRKRKRTRAPKNKDEVENQRMTHIAVERNRRRQMNE 136

Query: 90  YLSVLRSLMPDSYIQRGDQASIVGGAINFVKELEQQVQFLSTD-----------SSSCSS 149
           +L+ LRSLMP S++QRGDQASIVGGAI+F+KELEQ +Q L  +           ++SCSS
Sbjct: 137 HLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELEQLLQSLEAEKRKDGTDETPKTASCSS 196

Query: 150 CSS-SCSSSSQTQSSSIA--------------DIEVTMVENHANLKIRSKKRPKQVLKIV 209
            SS +C++SS +  S+ +              ++E T+++NH +LK+R K+  +Q+LK +
Sbjct: 197 SSSLACTNSSISSVSTTSENGFTARFGGGDTTEVEATVIQNHVSLKVRCKRGKRQILKAI 256

Query: 210 AGLQALFLSVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIEEE 238
             ++ L L++LHL IS+    V Y  ++K+ED CKL S DEIA A+HQ+  +I  E
Sbjct: 257 VSIEELKLAILHLTISSSFDFVIYSFNLKMEDGCKLGSADEIATAVHQIFEQINGE 306

[Close]

BLAST of CmoCh12G011010 vs. ExPASy Swiss-Prot
Match: Q56XR0 (Transcription factor bHLH71 OS=Arabidopsis thaliana OX=3702 GN=BHLH71 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-38
Identity = 105/250 (42.00%), Postives = 147/250 (58.80%), Query Frame = 0


Query: 37  ENPPLELESTTPNPVKPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLM 96
           E PP      T    K R+R+P+  KN++E ENQRMTHIAVERNRR+QMN++LSVLRSLM
Sbjct: 53  EPPPQRQPPATNRGKKRRRRKPRVCKNEEEAENQRMTHIAVERNRRRQMNQHLSVLRSLM 112

Query: 97  PDSYIQRGDQASIVGGAINFVKELEQQVQFLSTDSSSCSSCSSSCSSSSQTQSSS----- 156
           P  +  +GDQASIVGGAI+F+KELE ++  L       +  + S +SS+   S+      
Sbjct: 113 PQPFAHKGDQASIVGGAIDFIKELEHKLLSLEAQKHHNAKLNQSVTSSTSQDSNGEQENP 172

Query: 157 ---------------------------------IADIEVTMVENHANLKIRSKKR----- 216
                                            + D+EVT++E HAN++I S++R     
Sbjct: 173 HQPSSLSLSQFFLHSYDPSQENRNGSTSSVKTPMEDLEVTLIETHANIRILSRRRGFRWS 232

Query: 217 ------PKQVLKIVAGLQALFLSVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACAL 238
                 P Q+ K+VA LQ+L LS+LHL+++T++    Y +S KVE+ C+LSSVD+IA A+
Sbjct: 233 TLATTKPPQLSKLVASLQSLSLSILHLSVTTLDNYAIYSISAKVEESCQLSSVDDIAGAV 292

[Close]

BLAST of CmoCh12G011010 vs. ExPASy Swiss-Prot
Match: O81037 (Transcription factor bHLH70 OS=Arabidopsis thaliana OX=3702 GN=BHLH70 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 8.6e-35
Identity = 95/196 (48.47%), Postives = 130/196 (66.33%), Query Frame = 0


Query: 52  KPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVG 111
           K ++RR K  KN +EIE+QRMTHIAVERNRR+QMN +L+ LRS++P SYIQRGDQASIVG
Sbjct: 173 KRKRRRTKPTKNIEEIESQRMTHIAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQASIVG 232

Query: 112 GAINFVKELEQQVQFLST----------------DSSSCSSCSSSCSSSSQTQSSSIADI 171
           GAI+FVK LEQQ+Q L                  D+S  +  S+   +S++ + SS   I
Sbjct: 233 GAIDFVKILEQQLQSLEAQKRSQQSDDNKEQIPEDNSLRNISSNKLRASNKEEQSSKLKI 292

Query: 172 EVTMVENHANLKIRSKKRPKQVLKIVAGLQALFLSVLHLNI-STMNQVVHYCLSVKVEDD 231
           E T++E+H NLKI+  ++  Q+L+ +  L+ L  +VLHLNI S  N  V Y  ++K+ED+
Sbjct: 293 EATVIESHVNLKIQCTRKQGQLLRSIILLEKLRFTVLHLNITSPTNTSVSYSFNLKMEDE 352

[Close]

BLAST of CmoCh12G011010 vs. ExPASy TrEMBL
Match: A0A6J1FHZ8 (transcription factor bHLH94-like OS=Cucurbita moschata OX=3662 GN=LOC111444306 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.5e-122
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MALEAVVFSQDLYSLFAGGLSFEYPQIPHDFPEKQTENPPLELESTTPNPVKPRKRRPKS 60
           MALEAVVFSQDLYSLFAGGLSFEYPQIPHDFPEKQTENPPLELESTTPNPVKPRKRRPKS
Sbjct: 1   MALEAVVFSQDLYSLFAGGLSFEYPQIPHDFPEKQTENPPLELESTTPNPVKPRKRRPKS 60

Query: 61  RKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVGGAINFVKEL 120
           RKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVGGAINFVKEL
Sbjct: 61  RKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVGGAINFVKEL 120

Query: 121 EQQVQFLSTDSSSCSSCSSSCSSSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKI 180
           EQQVQFLSTDSSSCSSCSSSCSSSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKI
Sbjct: 121 EQQVQFLSTDSSSCSSCSSSCSSSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKI 180

Query: 181 VAGLQALFLSVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIEEESVM 240
           VAGLQALFLSVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIEEESVM
Sbjct: 181 VAGLQALFLSVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIEEESVM 240

Query: 241 N 242
           N
Sbjct: 241 N 241

[Close]

BLAST of CmoCh12G011010 vs. ExPASy TrEMBL
Match: A0A6J1HMW4 (transcription factor bHLH94-like OS=Cucurbita maxima OX=3661 GN=LOC111465636 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 4.8e-121
Identity = 239/241 (99.17%), Postives = 239/241 (99.17%), Query Frame = 0


Query: 1   MALEAVVFSQDLYSLFAGGLSFEYPQIPHDFPEKQTENPPLELESTTPNPVKPRKRRPKS 60
           MALEAVVFSQDLYSLFAGGLSFEYPQIPHDFPEKQTENPPLELES TPNPVKPRKRRPKS
Sbjct: 1   MALEAVVFSQDLYSLFAGGLSFEYPQIPHDFPEKQTENPPLELESRTPNPVKPRKRRPKS 60

Query: 61  RKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVGGAINFVKEL 120
           RKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVGGAINFVKEL
Sbjct: 61  RKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVGGAINFVKEL 120

Query: 121 EQQVQFLSTDSSSCSSCSSSCSSSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKI 180
           EQQVQFLSTDSSSCSSCSSSCSSSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKI
Sbjct: 121 EQQVQFLSTDSSSCSSCSSSCSSSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKI 180

Query: 181 VAGLQALFLSVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIEEESVM 240
           VAGLQALFLSVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIE ESVM
Sbjct: 181 VAGLQALFLSVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIEVESVM 240

Query: 241 N 242
           N
Sbjct: 241 N 241

[Close]

BLAST of CmoCh12G011010 vs. ExPASy TrEMBL
Match: A0A6J1G376 (transcription factor bHLH94-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450414 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 8.0e-92
Identity = 202/292 (69.18%), Postives = 221/292 (75.68%), Query Frame = 0


Query: 1   MALEAVVFSQDLYSLFAGGL----SFEYPQIPHDFPEKQTE------------------- 60
           MALEAVVFSQDLY+ F GG+    SF++PQIPHDFPEKQTE                   
Sbjct: 1   MALEAVVFSQDLYTSFGGGIWTNGSFQFPQIPHDFPEKQTENYPFEDWNSSSSVLLPIPS 60

Query: 61  --------NPPLELESTTPNPVKPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNEYL 120
                   NPPLE ES TPNP++PRKRRPKSRKNK++IENQRMTHIAVERNRRKQMNEYL
Sbjct: 61  PEEPAISRNPPLEAESRTPNPIRPRKRRPKSRKNKEDIENQRMTHIAVERNRRKQMNEYL 120

Query: 121 SVLRSLMPDSYIQRGDQASIVGGAINFVKELEQQVQFLSTDSSSCSSCSSS--------- 180
           SVLRSLMP+SY+QRGDQASI+GGAINFVKELEQQVQ LST  +    CSSS         
Sbjct: 121 SVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTMETKTKGCSSSKPPFSEFFT 180

Query: 181 ----------CS-SSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKIVAGLQALFL 240
                     CS   ++TQ SSIADIEVTMVENHANLKIRSK+RPKQ LKIVAGL +L L
Sbjct: 181 FPQFKSMEGCCSLGENETQCSSIADIEVTMVENHANLKIRSKRRPKQALKIVAGLHSLCL 240

Query: 241 SVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIEEESVMN 242
           SVLHLNIST+NQ+V YCLSVKVEDDCKL+SVDEIA ALHQLL RIEEESVMN
Sbjct: 241 SVLHLNISTINQIVLYCLSVKVEDDCKLNSVDEIASALHQLLCRIEEESVMN 292

[Close]

BLAST of CmoCh12G011010 vs. ExPASy TrEMBL
Match: A0A6J1KEF4 (transcription factor bHLH94-like OS=Cucurbita maxima OX=3661 GN=LOC111493603 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.8e-91
Identity = 202/292 (69.18%), Postives = 220/292 (75.34%), Query Frame = 0


Query: 1   MALEAVVFSQDLYSLFAGGL----SFEYPQIPHDFPEKQTE------------------- 60
           MALEAVVFSQDLY+ F GG+    SF++PQIPHDFPEKQTE                   
Sbjct: 1   MALEAVVFSQDLYTSFGGGIWTNGSFQFPQIPHDFPEKQTENFPFEDWNSSSSVFLPIPS 60

Query: 61  --------NPPLELESTTPNPVKPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNEYL 120
                   NPPLE ES TPNP++PRKRRPKSRKNK++IENQRMTHIAVERNRRKQMNEYL
Sbjct: 61  PEEPAISRNPPLEAESRTPNPIRPRKRRPKSRKNKEDIENQRMTHIAVERNRRKQMNEYL 120

Query: 121 SVLRSLMPDSYIQRGDQASIVGGAINFVKELEQQVQFLSTDSSSCSSCSSS--------- 180
           SVLRSLMP+SY+QRGDQASI+GGAINFVKELEQQVQ LST       CSSS         
Sbjct: 121 SVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTMEIKTKGCSSSKPPFSEFFT 180

Query: 181 ----------CS-SSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKIVAGLQALFL 240
                     CS   ++TQ SSIADIEVTMVENHANLKIRSK+RPKQ LKIVAGL +L L
Sbjct: 181 FPQFKSMEGCCSLGENETQCSSIADIEVTMVENHANLKIRSKRRPKQALKIVAGLHSLCL 240

Query: 241 SVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIEEESVMN 242
           SVLHLNIST+NQ+V YCLSVKVEDDCKL+SVDEIA ALHQLL RIEEESVMN
Sbjct: 241 SVLHLNISTINQIVLYCLSVKVEDDCKLNSVDEIASALHQLLCRIEEESVMN 292

[Close]

BLAST of CmoCh12G011010 vs. ExPASy TrEMBL
Match: A0A6J1G3F3 (transcription factor bHLH94-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450414 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.3e-89
Identity = 202/300 (67.33%), Postives = 221/300 (73.67%), Query Frame = 0


Query: 1   MALEAVVFSQDLYSLFAGGL----SFEYPQIPHDFPEKQTE------------------- 60
           MALEAVVFSQDLY+ F GG+    SF++PQIPHDFPEKQTE                   
Sbjct: 1   MALEAVVFSQDLYTSFGGGIWTNGSFQFPQIPHDFPEKQTENYPFEDWNSSSSVLLPIPS 60

Query: 61  --------NPPLELESTTPNPVKPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNEYL 120
                   NPPLE ES TPNP++PRKRRPKSRKNK++IENQRMTHIAVERNRRKQMNEYL
Sbjct: 61  PEEPAISRNPPLEAESRTPNPIRPRKRRPKSRKNKEDIENQRMTHIAVERNRRKQMNEYL 120

Query: 121 SVLRSLMPDSYIQRGDQASIVGGAINFVKELEQQVQFLSTDSSSCSSCSSS--------- 180
           SVLRSLMP+SY+QRGDQASI+GGAINFVKELEQQVQ LST  +    CSSS         
Sbjct: 121 SVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTMETKTKGCSSSKPPFSEFFT 180

Query: 181 ----------CS-SSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKIVAGLQALFL 240
                     CS   ++TQ SSIADIEVTMVENHANLKIRSK+RPKQ LKIVAGL +L L
Sbjct: 181 FPQFKSMEGCCSLGENETQCSSIADIEVTMVENHANLKIRSKRRPKQALKIVAGLHSLCL 240

Query: 241 SVLHLNISTMNQVVHYCLSVK--------VEDDCKLSSVDEIACALHQLLSRIEEESVMN 242
           SVLHLNIST+NQ+V YCLSVK        VEDDCKL+SVDEIA ALHQLL RIEEESVMN
Sbjct: 241 SVLHLNISTINQIVLYCLSVKGFGMDSLQVEDDCKLNSVDEIASALHQLLCRIEEESVMN 300

[Close]

BLAST of CmoCh12G011010 vs. TAIR 10
Match: AT1G22490.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 189.9 bits (481), Expect = 2.4e-48
Identity = 113/221 (51.13%), Postives = 156/221 (70.59%), Query Frame = 0


Query: 41  LELESTTPNPVKPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSY 100
           +++ES  P   + ++RR ++ KNK+EIENQRMTHIAVERNRRKQMNEYL+VLRSLMP SY
Sbjct: 84  IDVESHPPPQHRRKRRRTRNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSY 143

Query: 101 IQRGDQASIVGGAINFVKELEQQVQFLS-----------------------TDSSSCSSC 160
            QRGDQASIVGGAIN+VKELE  +Q +                        TD  S    
Sbjct: 144 AQRGDQASIVGGAINYVKELEHILQSMEPKRTRTHDPKGDKTSTSSLVGPFTDFFSFPQY 203

Query: 161 SSSCSSSSQTQSSSIADIEVTMVENHANLKIRSKKRPKQVLKIVAGLQALFLSVLHLNIS 220
           S+  SS     SSS A+IEVT+ E+HAN+KI +KK+P+Q+LK++  LQ+L L++LHLN++
Sbjct: 204 STKSSSDVPESSSSPAEIEVTVAESHANIKIMTKKKPRQLLKLITSLQSLRLTLLHLNVT 263

Query: 221 TMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIEEES 239
           T++  + Y +SV+VE+  +L++VD+IA AL+Q + RI+EE+
Sbjct: 264 TLHNSILYSISVRVEEGSQLNTVDDIATALNQTIRRIQEET 304

[Close]

BLAST of CmoCh12G011010 vs. TAIR 10
Match: AT1G72210.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 186.0 bits (471), Expect = 3.5e-47
Identity = 124/268 (46.27%), Postives = 174/268 (64.93%), Query Frame = 0


Query: 8   FSQDLYSLFAGGLSFEYP------QIPHDFP-----EKQTENPPLELESTTPNPVKPRKR 67
           F+ + Y+   G  S +Y       Q P D P     + +++ PP ++ +      + ++R
Sbjct: 53  FASNNYNGRTGDYSDDYNYNEEDLQWPRDLPYGSAVDTESQPPPSDVAA---GGGRRKRR 112

Query: 68  RPKSRKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVGGAINF 127
           R +S KNK+EIENQRMTHIAVERNRRKQMNEYL+VLRSLMP  Y QRGDQASIVGGAIN+
Sbjct: 113 RTRSSKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQASIVGGAINY 172

Query: 128 VKELEQQVQFLST-------------DSSSCSSCSSSCSSS-------------SQTQSS 187
           +KELE  +Q +               D +  +S SSS   S             S   + 
Sbjct: 173 LKELEHHLQSMEPPVKTATEDTGAGHDQTKTTSASSSGPFSDFFAFPQYSNRPTSAAAAE 232

Query: 188 SIADIEVTMVENHANLKIRSKKRPKQVLKIVAGLQALFLSVLHLNISTMNQVVHYCLSVK 239
            +A+IEVTMVE+HA+LKI +KKRP+Q+LK+V+ +Q+L L++LHLN++T +  V Y +SVK
Sbjct: 233 GMAEIEVTMVESHASLKILAKKRPRQLLKLVSSIQSLRLTLLHLNVTTRDDSVLYSISVK 292

[Close]

BLAST of CmoCh12G011010 vs. TAIR 10
Match: AT4G01460.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 169.1 bits (427), Expect = 4.4e-42
Identity = 107/236 (45.34%), Postives = 156/236 (66.10%), Query Frame = 0


Query: 30  DFPEK--QTENPPLELESTTPNPVKPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNE 89
           D PEK  +TEN  + ++       K +++R ++ KNK E+ENQRMTHIAVERNRR+QMNE
Sbjct: 77  DDPEKDPRTENGAVTVKE------KRKRKRTRAPKNKDEVENQRMTHIAVERNRRRQMNE 136

Query: 90  YLSVLRSLMPDSYIQRGDQASIVGGAINFVKELEQQVQFLSTD-----------SSSCSS 149
           +L+ LRSLMP S++QRGDQASIVGGAI+F+KELEQ +Q L  +           ++SCSS
Sbjct: 137 HLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELEQLLQSLEAEKRKDGTDETPKTASCSS 196

Query: 150 CSS-SCSSSSQTQSSSIA--------------DIEVTMVENHANLKIRSKKRPKQVLKIV 209
            SS +C++SS +  S+ +              ++E T+++NH +LK+R K+  +Q+LK +
Sbjct: 197 SSSLACTNSSISSVSTTSENGFTARFGGGDTTEVEATVIQNHVSLKVRCKRGKRQILKAI 256

Query: 210 AGLQALFLSVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACALHQLLSRIEEE 238
             ++ L L++LHL IS+    V Y  ++K+ED CKL S DEIA A+HQ+  +I  E
Sbjct: 257 VSIEELKLAILHLTISSSFDFVIYSFNLKMEDGCKLGSADEIATAVHQIFEQINGE 306

[Close]

BLAST of CmoCh12G011010 vs. TAIR 10
Match: AT5G46690.1 (beta HLH protein 71 )

HSP 1 Score: 161.4 bits (407), Expect = 9.1e-40
Identity = 105/250 (42.00%), Postives = 147/250 (58.80%), Query Frame = 0


Query: 37  ENPPLELESTTPNPVKPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLM 96
           E PP      T    K R+R+P+  KN++E ENQRMTHIAVERNRR+QMN++LSVLRSLM
Sbjct: 53  EPPPQRQPPATNRGKKRRRRKPRVCKNEEEAENQRMTHIAVERNRRRQMNQHLSVLRSLM 112

Query: 97  PDSYIQRGDQASIVGGAINFVKELEQQVQFLSTDSSSCSSCSSSCSSSSQTQSSS----- 156
           P  +  +GDQASIVGGAI+F+KELE ++  L       +  + S +SS+   S+      
Sbjct: 113 PQPFAHKGDQASIVGGAIDFIKELEHKLLSLEAQKHHNAKLNQSVTSSTSQDSNGEQENP 172

Query: 157 ---------------------------------IADIEVTMVENHANLKIRSKKR----- 216
                                            + D+EVT++E HAN++I S++R     
Sbjct: 173 HQPSSLSLSQFFLHSYDPSQENRNGSTSSVKTPMEDLEVTLIETHANIRILSRRRGFRWS 232

Query: 217 ------PKQVLKIVAGLQALFLSVLHLNISTMNQVVHYCLSVKVEDDCKLSSVDEIACAL 238
                 P Q+ K+VA LQ+L LS+LHL+++T++    Y +S KVE+ C+LSSVD+IA A+
Sbjct: 233 TLATTKPPQLSKLVASLQSLSLSILHLSVTTLDNYAIYSISAKVEESCQLSSVDDIAGAV 292

[Close]

BLAST of CmoCh12G011010 vs. TAIR 10
Match: AT2G46810.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 148.7 bits (374), Expect = 6.1e-36
Identity = 95/196 (48.47%), Postives = 130/196 (66.33%), Query Frame = 0


Query: 52  KPRKRRPKSRKNKQEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIVG 111
           K ++RR K  KN +EIE+QRMTHIAVERNRR+QMN +L+ LRS++P SYIQRGDQASIVG
Sbjct: 173 KRKRRRTKPTKNIEEIESQRMTHIAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQASIVG 232

Query: 112 GAINFVKELEQQVQFLST----------------DSSSCSSCSSSCSSSSQTQSSSIADI 171
           GAI+FVK LEQQ+Q L                  D+S  +  S+   +S++ + SS   I
Sbjct: 233 GAIDFVKILEQQLQSLEAQKRSQQSDDNKEQIPEDNSLRNISSNKLRASNKEEQSSKLKI 292

Query: 172 EVTMVENHANLKIRSKKRPKQVLKIVAGLQALFLSVLHLNI-STMNQVVHYCLSVKVEDD 231
           E T++E+H NLKI+  ++  Q+L+ +  L+ L  +VLHLNI S  N  V Y  ++K+ED+
Sbjct: 293 EATVIESHVNLKIQCTRKQGQLLRSIILLEKLRFTVLHLNITSPTNTSVSYSFNLKMEDE 352

The following BLAST results are available for this feature:

BLAST of CmoCh12G011010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SK91	3.4e-47	51.13	Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2	[more]
Q9C7T4	4.9e-46	46.27	Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1	[more]
Q9M128	6.2e-41	45.34	Transcription factor bHLH57 OS=Arabidopsis thaliana OX=3702 GN=BHLH57 PE=1 SV=1	[more]
Q56XR0	1.3e-38	42.00	Transcription factor bHLH71 OS=Arabidopsis thaliana OX=3702 GN=BHLH71 PE=1 SV=1	[more]
O81037	8.6e-35	48.47	Transcription factor bHLH70 OS=Arabidopsis thaliana OX=3702 GN=BHLH70 PE=2 SV=1	[more]

BLAST of CmoCh12G011010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHZ8	1.5e-122	100.00	transcription factor bHLH94-like OS=Cucurbita moschata OX=3662 GN=LOC111444306 P...	[more]
A0A6J1HMW4	4.8e-121	99.17	transcription factor bHLH94-like OS=Cucurbita maxima OX=3661 GN=LOC111465636 PE=...	[more]
A0A6J1G376	8.0e-92	69.18	transcription factor bHLH94-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KEF4	1.8e-91	69.18	transcription factor bHLH94-like OS=Cucurbita maxima OX=3661 GN=LOC111493603 PE=...	[more]
A0A6J1G3F3	1.3e-89	67.33	transcription factor bHLH94-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of CmoCh12G011010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22490.1	2.4e-48	51.13	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G72210.1	3.5e-47	46.27	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G01460.1	4.4e-42	45.34	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G46690.1	9.1e-40	42.00	beta HLH protein 71	[more]
AT2G46810.1	6.1e-36	48.47	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 75..126 e-value: 1.8E-10 score: 50.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 70..121 e-value: 2.9E-10 score: 40.0
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 69..120 score: 15.452934
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 54..135 e-value: 1.6E-12 score: 49.1
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 69..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..68
None	No IPR available	PANTHER	PTHR11969	MAX DIMERIZATION, MAD	coord: 33..132 coord: 135..241
None	No IPR available	PANTHER	PTHR11969:SF26	HELIX-LOOP-HELIX-LIKE PROTEIN	coord: 33..132 coord: 135..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G011010.1	CmoCh12G011010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding