CmoCh12G010980 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G010980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	alpha-crystallin domain-containing protein 22.3-like isoform X1
Location	Cmo_Chr12: 10032111 .. 10036060 (-)
RNA-Seq Expression	CmoCh12G010980
Synteny	CmoCh12G010980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATTCATCACAGCCCAATGCAATGCAATGTCGCTTATAAATTCATCTCCCACTGGCATTTCTCCTTGTCTTTAATACTGGATTCGTTGACAGAATCGGAACTCCCTTTTCCGAAGTCTCCGGCTACTTTCCGATGACTTCTCCGGCTAGGTATATTCTTCTTTTGACGTTCGATGTAACTACGGTGTCTGTATCTCTGTATCAGTTTTTAATCATCGGTTACTGCTGCTGTGGAGATTTTCTGTTTTCTAATTACTGTCTTCCGTTTATTGGCACTTGAACATTCTATTGTTGAAGAAGATAGGTATTAGGTCAAGGGTTTTTGGTGATAATGAGAAATGAACTGTTTACGGGTTTTAGAAGAATTGATGGAAATTTTTGTGCTCTATTTGTTTGCTATTGAATGTGTGTATGTGTAGTGGTTATTTTGCGGTGTTTTTGTTTTGAATTGGTGCGTAAGAGTGGAAATCAGGGGGAAATTTGTTGGAGATTTTGGCGATTTTAAAATAGTTGAGGTTCTCGGTAATGGGAGTTCGTGGATGAGCCTGAACTTTTGTCATCTATGGTTCTGATTGTATTTTGAGACGAGTTCTGTTCTTTGGTCGGTATGAAATTGGATTGAACGTAAGTGCTTGTTCATGGCTCTTCTTTTTGGACCTGAACTGATTTGATATTCTATGTACTTCACGGGTTCATGAGTTTTTCTTCTTTTTTTTGGAGAAGCTGAATTTTGGTTGACTTAATGGTTGATAAGAGCATGTAATAATAAAGGATTTAAGGAATGAGTTCAAGTCATGGTGGCCATCTGTTTAGAATTTAACAAGTGGTTTCAAATGGTTGTCTCTTAAGATTTGTCAAGGTGTGCGCAAGTTGTCTCAAAGATTCATAGATGTCAAAAAAGAAAAACACCTTAGTTATTTCCAACAATCTTACGTTTTTAGAAAAATGACACCGTGAGGAGAGGAAGAATAAGAAAAAGAAGGGCTGACTTGAGTTAAGTTATTGTCAACACTCTTACGTTTTTAGATATGTTAACCTTTTCTTAATCACAAATGATCAACACCTTAGTTGTTGTGTGTTACACCTTCCTCCATCTTAAGAATTTCTGTTTGTTGCTGTCTCGTTCTCTCTCTTGGTTGTGTAAACTCACCCGGATGTCCTAATTCACATAATATCCTATTGACAGCTTAGGCTAGGCATTACAGCATTTGATAGCCCAAGCACATGATTAACCTCGTGACAACTTTTTAGGCATGTGGCACTCTTTTGTATCTGTCCCTGTAGCTGTGAGATCCCACATCGGTTGGGGAGGAGAACAAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGCGTTTTAAAATCCTTGAGGGAAAACTTGAAAAGGAAAGCCCAAAGAGGACAATATCTGCTAGCAGTGGGCTTGGGCCATTACAAATGGTATTAGAGCTAGACACCGAGCGGTGTGTCAGCAAGGAGGTTGAGCCCCGAAGAGGACAATATCTGCTATCGGTGGGCTTGAGCCGTTACAAATGGGATTAGAGCCAGACACCGGGCGATGTGCCAACGAGGCGACCAAGCCTCGAAAGGGGGTGGACACGAGGCGGTGTGCCAACAAGGATGCTGAGTCCCGAAGGGGGTGGATTGAGGGGTCCCACATTGATTGGAGAAGGGAACGAGTGTCAGCGAGGACGCTGGCCCCGAAGGGGGTGTGGATTGTGAGATCCCACATTGGTTGGGGAGGAGAACGAAACATTTTTTATAAGGGTGTGGAAACCTTTCCCTAGCAGATGCGTTTTAAAAACCTTAAGGGGAAGCCCGAAAGGAAAAGCTCAAAGAGGACAATATCTGGTAGCGGAGGGCTTGGGCCGTTCGAGTAGCTTACCGTCCAGGCATTCATCTTTGCCTTCTTATATTAGTAACGGGAATAAATACTCTGGAAGAAACAAGTCCATTAAGTGAATCCTCTCTGTGACATTTTGGCATCAGTCTGAGAAAAATTTATTTACGCTTGAGAAATTTATTTTTTTTAAGGAGGTTATGTTTGTCAAGAGAAATTGTTGGAAATGGCTGTCAAAATCTGCCCTTCGTGTTCTATCACGGCTCATCTTCTATCTGTTGTTTCGACCACATGAACAACACCTCGGTGAAGAAAGGAAATCTTTAAGACTAAAATATCCTTTCTTATTCTTACTATTTTTCTCTTGAAAATCTGAATGCATTGGAATAATTTGACCAAATAGGTTATGCCTAGATATTTCATGATATGTTAGCATACTTTCCAATCTTTTATTTTCTATTTATAATTATACTTTGGTTCATTATAAGTCATATATCTCATATCTCGGTGGTGATATCTTTTATACTCTTCTCCCCTCACCCCTGCCTTACATGATGAGCTCATCACTTGCACGTAAACACTATATCACATACACACAAGAGGGTAGAAGTTTCCTTCACAATTTTTGCTTTTGGCAACGACTTTTGTCATAATCTCAGACTAGATTGTATTAGATGTCTGTCTCCCTCCTCAAATGCCCATTACAACACATCCAAGACCATCTTTTACTTATGAGTTAATTCTCTAAGGAAGAAATGTTCTCATTTGACTTGAGTAGGGACTGAACATGCTGTTGGACTGCTTATAGTATTGGTTCAATTTGGGAGTGTTTGCTATATCTTTTGTACCGTAGAGTTTAAAGACCCCCACCTCCAAGTGGTGGCCCTAGTTATATGAGCTCGGATGCTTGGAGATATCTTGGTGTCCCTGATTGGAAAACTATGTCCACCTCTGAGTTTCCTTTTTTTGTCATTTACTTTTTACATATGTTTTAAACTAAGAAAACGAAAAAATTGTTTTTGGAATTTGACTAAGAATTTAAATATTTTTTTAAGGAAGATGGAACACATCTTAGAGAAATGGTAAGAAAACAAGTACAATTTTTAAAAACCAAAATGGTTATCAAATGTAACCTTAATAATTCAAAATCTTTGTTCTCTCAAAGTAAGGACTGTTACAGGGATCCTTGATCACTACGTTTTTTAATTAGGAAAAGTAAGGATCTTAAAGACTCATCCTTCATGTCTGTTCAATAAACGGTATAAAGGAAAGCCATCAGACTATGTTTTGATCATATTACTGTCTTGCAGGGCTGAGGACACAAGAAAAAATGAGGCAGAACCATTAAGTCTTCGTAACCAGATTCTCGATGTGGCTCCCATCAATAGCATGCCATATATCGGTCCACCTCTACCACACAGCTACATTCCTTCTCCGCAAGCAGAAGATCCCGAGGCTGTGGTGAACGTTGGGCCTGCTATGGTATATTGTCCTCTGACAACCCGTCAAGAGTGGGACAATATTGTATCTTCCACCAAAAGCGGGGTTGCCCTCACTGGAACTGCAGCCATGGGAAAAGTTGGACCAGTTATCGGACGTGTGGACATCGGTGAGGATGACAATTCATACTTCTTCCGTGTCTCTCTTCCAGGGGTGGCTAGAGATCAAAGTGAGTGTTTGTTGAAATCAATCAGTTCTCTCTCACTTACTCTCCTACCATAATGTGCAGCTGTTAATGTTATCCTACCAATATCAGCACAAGATTGTTCTTAAATCTGTTGTTACATCGTCGCAATCATGTCGATTCCTGTTTCGGTGCACATGAAAACTATCTATTCTGACCAGACTATTGTTTTATGGCAGCAGACAGTTTCAGCTGCGACATGGACCCGGACGGGAAAGTGAAAATAATAGGAGTAACGACGACAGGCGAGAACATAGTATGTAAGAACTCACAAGTGTTTCGGATGCAGTCGAAAAATCTATGTCCACCAGGTCATTTCTCTATCACTTTTCAGCTACCTGGTCCTGTCAATAGCCTGCAATTTTCTGGTGCTTTTGGGGCAGATGGGATTTTAGAAGGCAGTGTAGCTAAAGGGTGA

mRNA sequence

GTATTCATCACAGCCCAATGCAATGCAATGTCGCTTATAAATTCATCTCCCACTGGCATTTCTCCTTGTCTTTAATACTGGATTCGTTGACAGAATCGGAACTCCCTTTTCCGAAGTCTCCGGCTACTTTCCGATGACTTCTCCGGCTAGGGCTGAGGACACAAGAAAAAATGAGGCAGAACCATTAAGTCTTCGTAACCAGATTCTCGATGTGGCTCCCATCAATAGCATGCCATATATCGGTCCACCTCTACCACACAGCTACATTCCTTCTCCGCAAGCAGAAGATCCCGAGGCTGTGGTGAACGTTGGGCCTGCTATGGTATATTGTCCTCTGACAACCCGTCAAGAGTGGGACAATATTGTATCTTCCACCAAAAGCGGGGTTGCCCTCACTGGAACTGCAGCCATGGGAAAAGTTGGACCAGTTATCGGACGTGTGGACATCGGTGAGGATGACAATTCATACTTCTTCCGTGTCTCTCTTCCAGGGGTGGCTAGAGATCAAACAGACAGTTTCAGCTGCGACATGGACCCGGACGGGAAAGTGAAAATAATAGGAGTAACGACGACAGGCGAGAACATAGTATGTAAGAACTCACAAGTGTTTCGGATGCAGTCGAAAAATCTATGTCCACCAGGTCATTTCTCTATCACTTTTCAGCTACCTGGTCCTGTCAATAGCCTGCAATTTTCTGGTGCTTTTGGGGCAGATGGGATTTTAGAAGGCAGTGTAGCTAAAGGGTGA

Coding sequence (CDS)

ATGACTTCTCCGGCTAGGGCTGAGGACACAAGAAAAAATGAGGCAGAACCATTAAGTCTTCGTAACCAGATTCTCGATGTGGCTCCCATCAATAGCATGCCATATATCGGTCCACCTCTACCACACAGCTACATTCCTTCTCCGCAAGCAGAAGATCCCGAGGCTGTGGTGAACGTTGGGCCTGCTATGGTATATTGTCCTCTGACAACCCGTCAAGAGTGGGACAATATTGTATCTTCCACCAAAAGCGGGGTTGCCCTCACTGGAACTGCAGCCATGGGAAAAGTTGGACCAGTTATCGGACGTGTGGACATCGGTGAGGATGACAATTCATACTTCTTCCGTGTCTCTCTTCCAGGGGTGGCTAGAGATCAAACAGACAGTTTCAGCTGCGACATGGACCCGGACGGGAAAGTGAAAATAATAGGAGTAACGACGACAGGCGAGAACATAGTATGTAAGAACTCACAAGTGTTTCGGATGCAGTCGAAAAATCTATGTCCACCAGGTCATTTCTCTATCACTTTTCAGCTACCTGGTCCTGTCAATAGCCTGCAATTTTCTGGTGCTTTTGGGGCAGATGGGATTTTAGAAGGCAGTGTAGCTAAAGGGTGA

Protein sequence

MTSPARAEDTRKNEAEPLSLRNQILDVAPINSMPYIGPPLPHSYIPSPQAEDPEAVVNVGPAMVYCPLTTRQEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLPGVARDQTDSFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLPGPVNSLQFSGAFGADGILEGSVAKG

Homology

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BLAST of CmoCh12G010980 vs. ExPASy Swiss-Prot
Match: Q84K79 (Alpha-crystallin domain-containing protein 22.3 OS=Arabidopsis thaliana OX=3702 GN=ACD22.3 PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.1e-57
Identity = 110/204 (53.92%), Postives = 153/204 (75.00%), Query Frame = 0


Query: 1   MTSPARAEDTRKNEAEPLSLRN-QILDVAPINSMPYIGPPLPHSYIPSPQAEDPEAVVNV 60
           M S +     R+N + P + RN QIL+V P+NSMPYIG P+ H+ + S +  D    V  
Sbjct: 1   MRSSSGLNGMRENNSFPDNTRNPQILEVTPLNSMPYIG-PVTHASMSSNRMNDSVEKVG- 60

Query: 61  GPAMVYCPLTTRQEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLP 120
           GPAM++ P  +  E+ N++S TK+GVALTG+AAMGK+G  IG VDI E ++SY+FRV+LP
Sbjct: 61  GPAMIFLPSDSSSEFSNLISQTKTGVALTGSAAMGKIGLTIGLVDIAESEDSYYFRVALP 120

Query: 121 GVARDQTDSFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLP 180
           GV+RD+ + FSC+++PDGK+ I G TTTGE  VCK++Q+F+M ++NLCPPGHF+I FQLP
Sbjct: 121 GVSRDEKE-FSCEIEPDGKIMIKGATTTGEQTVCKHNQIFKMLTQNLCPPGHFTINFQLP 180

Query: 181 GPVNSLQFSGAFGADGILEGSVAK 204
           GPV++ +F+G FG+DG+LEG V K
Sbjct: 181 GPVSNEEFNGNFGSDGVLEGVVKK 201

[Close]

BLAST of CmoCh12G010980 vs. ExPASy Swiss-Prot
Match: Q8RWL4 (Increased DNA methylation 2 OS=Arabidopsis thaliana OX=3702 GN=IDM2 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.6e-29
Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 97  GPVIGRVDIGEDDNSYFFRVSLPGVARDQTDSFSCDMDPDGKVKIIGVTTTGENIVCKNS 156
           G ++G +DIGE D++Y FRVSLPGV RD+   FSC+++ +GKV + GVTTTG   V + S
Sbjct: 237 GLMVGLMDIGECDDAYLFRVSLPGVKRDER-YFSCEVEDNGKVLVRGVTTTGGKRVKRYS 296

Query: 157 QVFRMQSKNLCPPGHFSITFQLPGPVNSLQFSGAFGADGILEGSVAK 204
            VF MQ+++LCPPG+FS++F+LPGPV+  +FSG FG DGILEG V K
Sbjct: 297 HVFEMQTRSLCPPGNFSVSFRLPGPVHPHEFSGNFGTDGILEGVVMK 342

[Close]

BLAST of CmoCh12G010980 vs. ExPASy Swiss-Prot
Match: Q9SYQ0 (Increased DNA methylation 3 OS=Arabidopsis thaliana OX=3702 GN=IDM3 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-24
Identity = 57/125 (45.60%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 79  SSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLPGVARDQTDSFSCDMDPDGK 138
           S  +  V  TGTA+   +G  +G VDIG +  +YFF+V+LPGV +D  + FSC+++ DGK
Sbjct: 336 SDAEPSVVTTGTASKETLGSSVGVVDIGVNKVAYFFQVALPGVRKDYGE-FSCEIESDGK 395

Query: 139 VKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLPGPVNSLQFSGAFGADGILE 198
           V + G TT GE  + ++S+VF M  + LCPPG F + F LPGPV+   FS  F +DGI E
Sbjct: 396 VILEGSTTRGEKNIKRHSRVFEMNIRKLCPPGPFKLCFNLPGPVDPRLFSPNFRSDGIFE 455

Query: 199 GSVAK 204
           G + +
Sbjct: 456 GVIIR 459

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BLAST of CmoCh12G010980 vs. ExPASy TrEMBL
Match: A0A6J1FD65 (alpha-crystallin domain-containing protein 22.3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444307 PE=3 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 5.3e-113
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MTSPARAEDTRKNEAEPLSLRNQILDVAPINSMPYIGPPLPHSYIPSPQAEDPEAVVNVG 60
           MTSPARAEDTRKNEAEPLSLRNQILDVAPINSMPYIGPPLPHSYIPSPQAEDPEAVVNVG
Sbjct: 1   MTSPARAEDTRKNEAEPLSLRNQILDVAPINSMPYIGPPLPHSYIPSPQAEDPEAVVNVG 60

Query: 61  PAMVYCPLTTRQEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLPG 120
           PAMVYCPLTTRQEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLPG
Sbjct: 61  PAMVYCPLTTRQEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLPG 120

Query: 121 VARDQTDSFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLPG 180
           VARDQTDSFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLPG
Sbjct: 121 VARDQTDSFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLPG 180

Query: 181 PVNSLQFSGAFGADGILEGSVAKG 205
           PVNSLQFSGAFGADGILEGSVAKG
Sbjct: 181 PVNSLQFSGAFGADGILEGSVAKG 204

[Close]

BLAST of CmoCh12G010980 vs. ExPASy TrEMBL
Match: A0A6J1FIU1 (alpha-crystallin domain-containing protein 22.3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444307 PE=3 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 1.9e-110
Identity = 202/204 (99.02%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 1   MTSPARAEDTRKNEAEPLSLRNQILDVAPINSMPYIGPPLPHSYIPSPQAEDPEAVVNVG 60
           MTSPARAEDTRKNEAEPLSLRNQILDVAPINSMPYIGPPLPHSYIPSPQAEDPEAVVNVG
Sbjct: 1   MTSPARAEDTRKNEAEPLSLRNQILDVAPINSMPYIGPPLPHSYIPSPQAEDPEAVVNVG 60

Query: 61  PAMVYCPLTTRQEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLPG 120
           PAMVYCPLTTRQEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLPG
Sbjct: 61  PAMVYCPLTTRQEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLPG 120

Query: 121 VARDQTDSFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLPG 180
           VARDQ +SFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLPG
Sbjct: 121 VARDQ-NSFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLPG 180

Query: 181 PVNSLQFSGAFGADGILEGSVAKG 205
           PVNSLQFSGAFGADGILEGSVAKG
Sbjct: 181 PVNSLQFSGAFGADGILEGSVAKG 203

[Close]

BLAST of CmoCh12G010980 vs. ExPASy TrEMBL
Match: A0A6J1HQ58 (alpha-crystallin domain-containing protein 22.3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465668 PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 2.7e-109
Identity = 199/205 (97.07%), Postives = 203/205 (99.02%), Query Frame = 0


Query: 1   MTSPARAEDTRKNEAEPLSLRNQILDVAPINSMPYIGPPLPHSYIP-SPQAEDPEAVVNV 60
           MTSPARAEDTRKNEAEPLSLRNQILDVAPINSMPYIGPPLPHSYIP SP+AEDPEAVVNV
Sbjct: 1   MTSPARAEDTRKNEAEPLSLRNQILDVAPINSMPYIGPPLPHSYIPSSPRAEDPEAVVNV 60

Query: 61  GPAMVYCPLTTRQEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLP 120
           GPAMVYCPLTT QEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGE+DNSYFFRVSLP
Sbjct: 61  GPAMVYCPLTTHQEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGENDNSYFFRVSLP 120

Query: 121 GVARDQTDSFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLP 180
           GVARDQTDSFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLP
Sbjct: 121 GVARDQTDSFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLP 180

Query: 181 GPVNSLQFSGAFGADGILEGSVAKG 205
           GPVN+LQFSGAFGADGILEGSV+KG
Sbjct: 181 GPVNNLQFSGAFGADGILEGSVSKG 205

[Close]

BLAST of CmoCh12G010980 vs. ExPASy TrEMBL
Match: A0A6J1HN09 (alpha-crystallin domain-containing protein 22.3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465668 PE=3 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 9.7e-107
Identity = 197/205 (96.10%), Postives = 202/205 (98.54%), Query Frame = 0


Query: 1   MTSPARAEDTRKNEAEPLSLRNQILDVAPINSMPYIGPPLPHSYIP-SPQAEDPEAVVNV 60
           MTSPARAEDTRKNEAEPLSLRNQILDVAPINSMPYIGPPLPHSYIP SP+AEDPEAVVNV
Sbjct: 1   MTSPARAEDTRKNEAEPLSLRNQILDVAPINSMPYIGPPLPHSYIPSSPRAEDPEAVVNV 60

Query: 61  GPAMVYCPLTTRQEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLP 120
           GPAMVYCPLTT QEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGE+DNSYFFRVSLP
Sbjct: 61  GPAMVYCPLTTHQEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGENDNSYFFRVSLP 120

Query: 121 GVARDQTDSFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLP 180
           GVARDQ +SFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLP
Sbjct: 121 GVARDQ-NSFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLP 180

Query: 181 GPVNSLQFSGAFGADGILEGSVAKG 205
           GPVN+LQFSGAFGADGILEGSV+KG
Sbjct: 181 GPVNNLQFSGAFGADGILEGSVSKG 204

[Close]

BLAST of CmoCh12G010980 vs. ExPASy TrEMBL
Match: A0A0A0LGB8 (SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G021590 PE=3 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.1e-97
Identity = 177/204 (86.76%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 1   MTSPARAEDTRKNEAEPLSLRNQILDVAPINSMPYIGPPLPHSYIP-SPQAEDPEAVVNV 60
           MTSPAR E+TRKNEA+  + R +IL+VAPINSMPYIGPPLPHSYIP SP+ EDPEA+V V
Sbjct: 1   MTSPARVEETRKNEADSSNPRQRILNVAPINSMPYIGPPLPHSYIPSSPRVEDPEAMVKV 60

Query: 61  GPAMVYCPLTTRQEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLP 120
           GPAMVYCPLTT QEWD+IVS+TK+GV+LTGTAAMGKVGPVIGRVDIGE++NSYFFRVSLP
Sbjct: 61  GPAMVYCPLTTSQEWDDIVSATKTGVSLTGTAAMGKVGPVIGRVDIGENENSYFFRVSLP 120

Query: 121 GVARDQTDSFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLP 180
           GVARDQTDSFSCDM+PDG+VKI GVTTTGENIVCKNSQ+FRMQSKNLCPPGHFSITFQLP
Sbjct: 121 GVARDQTDSFSCDMEPDGQVKIRGVTTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLP 180

Query: 181 GPVNSLQFSGAFGADGILEGSVAK 204
           GPVN+LQFSGAFGADGILEGSVAK
Sbjct: 181 GPVNNLQFSGAFGADGILEGSVAK 204

[Close]

BLAST of CmoCh12G010980 vs. TAIR 10
Match: AT1G54850.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 223.0 bits (567), Expect = 2.2e-58
Identity = 110/204 (53.92%), Postives = 153/204 (75.00%), Query Frame = 0


Query: 1   MTSPARAEDTRKNEAEPLSLRN-QILDVAPINSMPYIGPPLPHSYIPSPQAEDPEAVVNV 60
           M S +     R+N + P + RN QIL+V P+NSMPYIG P+ H+ + S +  D    V  
Sbjct: 1   MRSSSGLNGMRENNSFPDNTRNPQILEVTPLNSMPYIG-PVTHASMSSNRMNDSVEKVG- 60

Query: 61  GPAMVYCPLTTRQEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLP 120
           GPAM++ P  +  E+ N++S TK+GVALTG+AAMGK+G  IG VDI E ++SY+FRV+LP
Sbjct: 61  GPAMIFLPSDSSSEFSNLISQTKTGVALTGSAAMGKIGLTIGLVDIAESEDSYYFRVALP 120

Query: 121 GVARDQTDSFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLP 180
           GV+RD+ + FSC+++PDGK+ I G TTTGE  VCK++Q+F+M ++NLCPPGHF+I FQLP
Sbjct: 121 GVSRDEKE-FSCEIEPDGKIMIKGATTTGEQTVCKHNQIFKMLTQNLCPPGHFTINFQLP 180

Query: 181 GPVNSLQFSGAFGADGILEGSVAK 204
           GPV++ +F+G FG+DG+LEG V K
Sbjct: 181 GPVSNEEFNGNFGSDGVLEGVVKK 201

[Close]

BLAST of CmoCh12G010980 vs. TAIR 10
Match: AT1G54840.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 3.3e-30
Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 97  GPVIGRVDIGEDDNSYFFRVSLPGVARDQTDSFSCDMDPDGKVKIIGVTTTGENIVCKNS 156
           G ++G +DIGE D++Y FRVSLPGV RD+   FSC+++ +GKV + GVTTTG   V + S
Sbjct: 237 GLMVGLMDIGECDDAYLFRVSLPGVKRDER-YFSCEVEDNGKVLVRGVTTTGGKRVKRYS 296

Query: 157 QVFRMQSKNLCPPGHFSITFQLPGPVNSLQFSGAFGADGILEGSVAK 204
            VF MQ+++LCPPG+FS++F+LPGPV+  +FSG FG DGILEG V K
Sbjct: 297 HVFEMQTRSLCPPGNFSVSFRLPGPVHPHEFSGNFGTDGILEGVVMK 342

[Close]

BLAST of CmoCh12G010980 vs. TAIR 10
Match: AT1G20870.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-25
Identity = 57/125 (45.60%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 79  SSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLPGVARDQTDSFSCDMDPDGK 138
           S  +  V  TGTA+   +G  +G VDIG +  +YFF+V+LPGV +D  + FSC+++ DGK
Sbjct: 336 SDAEPSVVTTGTASKETLGSSVGVVDIGVNKVAYFFQVALPGVRKDYGE-FSCEIESDGK 395

Query: 139 VKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLPGPVNSLQFSGAFGADGILE 198
           V + G TT GE  + ++S+VF M  + LCPPG F + F LPGPV+   FS  F +DGI E
Sbjct: 396 VILEGSTTRGEKNIKRHSRVFEMNIRKLCPPGPFKLCFNLPGPVDPRLFSPNFRSDGIFE 455

Query: 199 GSVAK 204
           G + +
Sbjct: 456 GVIIR 459

[Close]

BLAST of CmoCh12G010980 vs. TAIR 10
Match: AT1G76440.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-22
Identity = 60/125 (48.00%), Postives = 75/125 (60.00%), Query Frame = 0


Query: 79  SSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLPGVARDQTDSFSCDMDPDGK 138
           S   S V  TGTA +G VGP IG VDIG  + +Y FRVSLPG+ ++Q D   C++  +G+
Sbjct: 13  SKVISHVFCTGTAKLGSVGPPIGLVDIGVSEVAYIFRVSLPGIEKNQ-DKIKCEIQREGR 72

Query: 139 VKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLPGPVNSLQFSGAFGADGILE 198
           V I GV      I      ++RMQ + LCPPG FSITF LPG V+   FS  F +DGI E
Sbjct: 73  VCIQGVIPE-IAIPSDTGCLYRMQVQQLCPPGPFSITFNLPGQVDPRLFSPNFRSDGIFE 132

Query: 199 GSVAK 204
             V K
Sbjct: 133 VVVVK 135

[Close]

BLAST of CmoCh12G010980 vs. TAIR 10
Match: AT1G76440.2 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-22
Identity = 60/125 (48.00%), Postives = 75/125 (60.00%), Query Frame = 0


Query: 79  SSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLPGVARDQTDSFSCDMDPDGK 138
           S   S V  TGTA +G VGP IG VDIG  + +Y FRVSLPG+ ++Q D   C++  +G+
Sbjct: 13  SKVISHVFCTGTAKLGSVGPPIGLVDIGVSEVAYIFRVSLPGIEKNQ-DKIKCEIQREGR 72

Query: 139 VKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLPGPVNSLQFSGAFGADGILE 198
           V I GV      I      ++RMQ + LCPPG FSITF LPG V+   FS  F +DGI E
Sbjct: 73  VCIQGVIPE-IAIPSDTGCLYRMQVQQLCPPGPFSITFNLPGQVDPRLFSPNFRSDGIFE 132

Query: 199 GSVAK 204
             V K
Sbjct: 133 VVVVK 135

The following BLAST results are available for this feature:

BLAST of CmoCh12G010980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84K79	3.1e-57	53.92	Alpha-crystallin domain-containing protein 22.3 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q8RWL4	4.6e-29	57.94	Increased DNA methylation 2 OS=Arabidopsis thaliana OX=3702 GN=IDM2 PE=1 SV=1	[more]
Q9SYQ0	1.5e-24	45.60	Increased DNA methylation 3 OS=Arabidopsis thaliana OX=3702 GN=IDM3 PE=1 SV=1	[more]

BLAST of CmoCh12G010980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FD65	5.3e-113	100.00	alpha-crystallin domain-containing protein 22.3-like isoform X1 OS=Cucurbita mos...	[more]
A0A6J1FIU1	1.9e-110	99.02	alpha-crystallin domain-containing protein 22.3-like isoform X2 OS=Cucurbita mos...	[more]
A0A6J1HQ58	2.7e-109	97.07	alpha-crystallin domain-containing protein 22.3-like isoform X1 OS=Cucurbita max...	[more]
A0A6J1HN09	9.7e-107	96.10	alpha-crystallin domain-containing protein 22.3-like isoform X2 OS=Cucurbita max...	[more]
A0A0A0LGB8	1.1e-97	86.76	SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G021590 PE=3 S...	[more]

BLAST of CmoCh12G010980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54850.1	2.2e-58	53.92	HSP20-like chaperones superfamily protein	[more]
AT1G54840.1	3.3e-30	57.94	HSP20-like chaperones superfamily protein	[more]
AT1G20870.1	1.1e-25	45.60	HSP20-like chaperones superfamily protein	[more]
AT1G76440.1	1.9e-22	48.00	HSP20-like chaperones superfamily protein	[more]
AT1G76440.2	1.9e-22	48.00	HSP20-like chaperones superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 100..204 e-value: 1.0E-8 score: 37.0
None	No IPR available	PANTHER	PTHR34661:SF9	SUBFAMILY NOT NAMED	coord: 1..203
None	No IPR available	CDD	cd06464	ACD_sHsps-like	coord: 104..203 e-value: 2.06644E-7 score: 45.2377
IPR039321	Increased DNA methylation 2/3-like	PANTHER	PTHR34661	INCREASED DNA METHYLATION 3	coord: 1..203
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 94..204 score: 10.577331

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G010980.1	CmoCh12G010980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034440	lipid oxidation
biological_process	GO:1901537	positive regulation of DNA demethylation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen