CmoCh12G010720 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G010720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ATP-dependent Clp protease proteolytic subunit
Location	Cmo_Chr12: 9855138 .. 9858326 (-)
RNA-Seq Expression	CmoCh12G010720
Synteny	CmoCh12G010720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGGGCATGGAATGCCCTCAATTTGATCCGTTCATATCGGGTCAGTTTGAGTGAGTTTGACGTATCGAAAGTGCTTTTCGGAGTGCTTCGAGAACAAATACTTCACAGAGGATCGTCTTCAAGCATCGCCTCACCAAACTCATTATTAGTATGTTTGAGGAAAAGATCATAAAAGAAACGATCAAAATGGTGCTTGAATCTATTTACGATCCCGAGTTTTCAGACACATTGCATTTCCACTTGGGGCGAGGTCGCCACTTGACAATTGGGTTTCTAATTCAATTTGTTGGGGTGTTCGAAGAATGATGTCGGCTACTCCAAGTCACCTGCTTATTTGTATTGCTACAATCATGGTGAACAAGAAGAGAGTTGGGAGATTAAGATGCCAAATTAACTCGATATCATTCTGTCTACTGTCAAATCCTAGGGTTCAACCTTGGACAGCTGTAGACATCAAAAGTGACAAGAGTTAAACTAAAAGATACACAATAGAATCAACGTAAAAACGTTTAGAGAATGACATGATGCCACAAACAATACGATTTGAACAAGCATGACCGTGAAAAATATCATTAATCAAATTCATATATATATATATATATATATATATTTAAAAAAATCATACTAAAAGTGTTTAATTTAGCGGCACATAAACGAGTTGAAGTGAAATTTATCTTTGCTTTGTGCATCTAAATCGATGTTTTTCGACATTTTGAGCTACATCTCAATGCAGTCCTAGATGAGCATAATCGAGAACTCACAAGTTGAAGTGAAAGTAGTACTAAAAGGAATGAACCCAACAAAGGCTCCTAGACCTAACCCGGTCAAACTGAAATATGTCTTAATAATCTTAACAAACAATTATGAAAGATCTATGTTTATGATGTGCACGAATACAATAGTGGAAGCTCGAGATTTCATTCATAGAGAGCTCTATGCTGCGAAAATCGATACTATAGGAGAGTATTTGAAGCTCCTATCACGAAGTGCTAGAAGTAAATGTTCTTATTATTATCATCATCATTATTATTATTTAAGGGAAATTGATGAGATTATTATTATTATTATTTATCATTATTTTTGTTGATAATTTAATCACAAACAATTGGCCAAGGAATTGGGCCATGAAATAAATTTTGATCCAAGTAATTGGGCCTATCCCATTTCATCCGGCCCAAGACTCGGCCCTTATAAAGCCCAAGATTCTCCTCATGGCTGCACCAGCTCAAGTTGGATGTTCTTCGCGTAATTTCGTATTACTCTTTTGTTCTTGCTGTTTTTCTATAATGAATTTCTATAAACGAACGGAATTTTCTTTATGCAAGTAATAATAGTTTGAATTAAGTTTTGTTCGTTAGCTCATGTTGCGAATTTGGTGATTTTCTTGTTGGATAAGGTCGAAAGATCAGTTTCCTACAATGAACATACGTCGAGGAGGCCGCCGCCGGAGTTGCCGTCTCTATTACTTCATGGAAGAATCATTTACATCGGAATGCCTGTAAGTGCTTGAATTAGTGTTTGTCCAGTGCTATACGATTTAACTCGTTACTCGATGAACTATTCAACGAATAGAAAGGGAGAATTTACGACTGTTTTTTTCAACAACGTGTTGTCGAGCAGTTTCATAAGAAGAAAAAATCAAAAGAAGAAGCATGTTCTTCGAACTTATAAAAAATAGAAAGGTGCATCTCATGATAATCACGTATTTTCGATCTCTGGAGACGTACAGAGTGATGAAAATTCTAGTTCAGGAATGAGTGAGTCATGCTGTTTTAGGAACCTTGTTTGTTGAACTGAAAGTATCAATTGGAGTACTTTGATATCGTGATCACCTTAGAATAGATTTTGTGAGTACATTCAAGTGCTGAATTTGAAGTTCGGCAGTAATTCTTGAAATTCTTGGCAAGTTCTCGATTTATTTTAACTGATTTTCATTTGTTTCCTCTCGACTTGCATAAGCTTTACTGAAATAGACATTCACTGTGTAAGTGTTTTTAGGTTTTTTTAAAAATTAATTTCGAGGCATAATCGATTTTGAATGTTTAAGAATCGATTGTGCATAGTTTTTTGTTGGATGATGAAAGTCCCCATCGGCTAATTTAGGGAATGATCATGGGTTTATAAACAAAGAATACTCTCTCCATTGGTATGAGGCATTTTGGGGAAGCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTAGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACATGGTATCAGAGTCATGCCCTAAACTTAGTCGTGCCAATAGATTGGTAAATCCTCAAATGTCGAACAAAGGACTCCAACATGAAAAAGGAGTTAAGCCTCCTCGAAGGCAGTAAAAATTGACTAAGACTCCAAAGGAGTCGAGCCTCAATTAAGGGGATATGTGGTTTGTTCGAGGGGAGGTGTTGGATGATGAAAGTCCCAATCGGGTGATTTAGGGAATGATCATGGGTTTATAAACAAAGAATACGCTCTCCATTGGTATGAGGACTTTTGGGGAAGTCCAAAGCAAAACCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATCGTGGAGAGTCGTGTTCATCTAACATTTTTTGACTTCCATCTTATAGAAGAAGTTTTCTGCTTCACGCAAGCATGTCATATGGTTACTTACCTAAAACGTCTTCATTCAATTATTTCTGCTCTCAGTTTGTTCCAGCTGTCACAGAGCTAGTTATTGCTGAACTGATGTACCTGCAATGGATGGATCCAAGAGAACCAATATATCTTTATATAAACTCCACAGGAACAACTCGAGATGCTGACGAAACTGTAAGCTTTTAATTTATTCAGCTACCTGAAACAAGTGAAATTAAGTTGTGAAGGGCATGCATTTCTTTCCTCATGCTTTATATTATCATCTGCCTACATTTTTAGGTTTTGTATTCAGACTATAAATCTGCCTCGTTTATCTACGTGTTGACATGAATATCAACTTGTTTGTCTTGATCTGGAGTTCCTTTGTTTGAGATGTTACAGGACTCATTTTCTAATTTGTTCATCATTAATAATTAAGAAAAACAATTAAAATGAGATTGTAATTTTTAGATTTTTTCTTCCAAAAGTATGTTTAATTGTAATTGCTAAGAGCAGCTTCTTGATCCACAATCTGTGAAATTGGGCTGGGTTTGA

mRNA sequence

ATGGCAAAGGGCATGGAATGCCCTCAATTTGATCCGTTCATATCGGCTCATGTTGCGAATTTGGTGATTTTCTTGTTGGATAAGGTCGAAAGATCAGTTTCCTACAATGAACATACGTCGAGGAGGCCGCCGCCGGAGTTGCCGTCTCTATTACTTCATGGAAGAATCATTTACATCGGAATGCCTTTTGTTCCAGCTGTCACAGAGCTAGTTATTGCTGAACTGATGTACCTGCAATGGATGGATCCAAGAGAACCAATATATCTTTATATAAACTCCACAGGAACAACTCGAGATGCTGACGAAACTCTTCTTGATCCACAATCTGTGAAATTGGGCTGGGTTTGA

Coding sequence (CDS)

ATGGCAAAGGGCATGGAATGCCCTCAATTTGATCCGTTCATATCGGCTCATGTTGCGAATTTGGTGATTTTCTTGTTGGATAAGGTCGAAAGATCAGTTTCCTACAATGAACATACGTCGAGGAGGCCGCCGCCGGAGTTGCCGTCTCTATTACTTCATGGAAGAATCATTTACATCGGAATGCCTTTTGTTCCAGCTGTCACAGAGCTAGTTATTGCTGAACTGATGTACCTGCAATGGATGGATCCAAGAGAACCAATATATCTTTATATAAACTCCACAGGAACAACTCGAGATGCTGACGAAACTCTTCTTGATCCACAATCTGTGAAATTGGGCTGGGTTTGA

Protein sequence

MAKGMECPQFDPFISAHVANLVIFLLDKVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPIYLYINSTGTTRDADETLLDPQSVKLGWV

Homology

[Close]

BLAST of CmoCh12G010720 vs. ExPASy Swiss-Prot
Match: Q8L770 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR3 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-30
Identity = 60/77 (77.92%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 28  KVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPI 87
           +VERSV+YNEH  R PPP+LPS+LL GRI+YIGMP VPAVTELV+AELMYLQW+DP+EPI
Sbjct: 103 QVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPI 162

Query: 88  YLYINSTGTTRDADETL 105
           Y+YINSTGTTRD  ET+
Sbjct: 163 YIYINSTGTTRDDGETV 179

[Close]

BLAST of CmoCh12G010720 vs. ExPASy Swiss-Prot
Match: Q8LB10 (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-15
Identity = 36/68 (52.94%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 42  RPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPIYLYINSTGTTRDAD 101
           +PPP+L S L   RI+Y+GM  VP+VTEL++AE +YLQ+ D  +PIYLYINSTGTT++ +
Sbjct: 101 QPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGE 160

Query: 102 ETLLDPQS 110
           +   D ++
Sbjct: 161 KLGYDTEA 168

[Close]

BLAST of CmoCh12G010720 vs. ExPASy Swiss-Prot
Match: Q9XJ35 (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR1 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-15
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 41  RRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPIYLYINSTGTTRDA 100
           R  PP+LPSLLL  RI Y+GMP VPAVTEL++A+ M+L + +P +PIYLYINS GT  + 
Sbjct: 166 RTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEK 225

Query: 101 DETL 105
            ET+
Sbjct: 226 METV 229

[Close]

BLAST of CmoCh12G010720 vs. ExPASy Swiss-Prot
Match: Q9L4P4 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpR PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-13
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 35 YNEHTSRRPPPELPSLLLHGRIIYIGMPFVPA----------VTELVIAELMYLQWMDPR 94
          Y + + R PPP+LPSLLL  RIIY+GMP   +          VTEL+IA+L+YL++ +P 
Sbjct: 13 YGDVSYRTPPPDLPSLLLKERIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPE 72

Query: 95 EPIYLYINSTGTT 98
          +PIY YINSTGT+
Sbjct: 73 KPIYFYINSTGTS 85

[Close]

BLAST of CmoCh12G010720 vs. ExPASy Swiss-Prot
Match: P74466 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=clpR PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 31 RSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPA----------VTELVIAELMYLQW 90
          +S  Y +   + PPP+L SLLL  RI+Y+GMP   +          VT+L+IA+L+YLQ+
Sbjct: 7  QSSYYGDMAFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQF 66

Query: 91 MDPREPIYLYINSTGTT 98
           DP +PIY YINSTGT+
Sbjct: 67 DDPDKPIYFYINSTGTS 83

[Close]

BLAST of CmoCh12G010720 vs. ExPASy TrEMBL
Match: A0A6J1FAM0 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443918 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.3e-43
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 28  KVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPI 87
           +VERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPI
Sbjct: 15  RVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPI 74

Query: 88  YLYINSTGTTRDADETLLDPQSVKLGWV 116
           YLYINSTGTTRDADETLLDPQSVKLGWV
Sbjct: 75  YLYINSTGTTRDADETLLDPQSVKLGWV 102

[Close]

BLAST of CmoCh12G010720 vs. ExPASy TrEMBL
Match: A0A6J1HQN5 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465735 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.9e-41
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 28  KVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPI 87
           +VERSVSY+EHTSRRPPPELPSLLLHGRIIYIGMPFVPAV ELVIAELMYLQWMDP+EPI
Sbjct: 15  RVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVRELVIAELMYLQWMDPKEPI 74

Query: 88  YLYINSTGTTRDADETLLDPQSVKLGWV 116
           YLYINSTGTTRD DETLLDPQSVKLGWV
Sbjct: 75  YLYINSTGTTRDDDETLLDPQSVKLGWV 102

[Close]

BLAST of CmoCh12G010720 vs. ExPASy TrEMBL
Match: A0A5J5BQP1 (ATP-dependent Clp protease proteolytic subunit OS=Nyssa sinensis OX=561372 GN=F0562_019933 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.7e-31
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 28  KVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPI 87
           KVERSVSYNEH  RRPPP+LPSLLLHGRI+YIGMP VPAVTELVIAELMYLQWMDP+EPI
Sbjct: 19  KVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPI 78

Query: 88  YLYINSTGTTRDADETL 105
           YLYINSTGTTRD  ET+
Sbjct: 79  YLYINSTGTTRDDGETV 95

[Close]

BLAST of CmoCh12G010720 vs. ExPASy TrEMBL
Match: A0A1J6JKV5 (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana attenuata OX=49451 GN=CLPR3 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.7e-31
Identity = 68/93 (73.12%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 12  PFISAHVANLVIFLLDKVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELV 71
           PF+  + +  ++    +VERSVSYNEH  RRPPP+LPSLLLHGRI+YIGMP VPAVTELV
Sbjct: 79  PFLDIYDSPKLMATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELV 138

Query: 72  IAELMYLQWMDPREPIYLYINSTGTTRDADETL 105
           +AELMYLQWMDP+EPIYLYINSTGTTRD  ET+
Sbjct: 139 VAELMYLQWMDPKEPIYLYINSTGTTRDDGETV 171

[Close]

BLAST of CmoCh12G010720 vs. ExPASy TrEMBL
Match: A0A1U7X7K8 (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana sylvestris OX=4096 GN=LOC104231207 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.7e-31
Identity = 68/93 (73.12%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 12  PFISAHVANLVIFLLDKVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELV 71
           PF+  + +  ++    +VERSVSYNEH  RRPPP+LPSLLLHGRI+YIGMP VPAVTELV
Sbjct: 79  PFLDIYDSPKLMATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELV 138

Query: 72  IAELMYLQWMDPREPIYLYINSTGTTRDADETL 105
           +AELMYLQWMDP+EPIYLYINSTGTTRD  ET+
Sbjct: 139 VAELMYLQWMDPKEPIYLYINSTGTTRDDGETV 171

[Close]

BLAST of CmoCh12G010720 vs. TAIR 10
Match: AT1G09130.1 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 133.7 bits (335), Expect = 9.7e-32
Identity = 60/77 (77.92%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 28  KVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPI 87
           +VERSV+YNEH  R PPP+LPS+LL GRI+YIGMP VPAVTELV+AELMYLQW+DP+EPI
Sbjct: 103 QVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPI 162

Query: 88  YLYINSTGTTRDADETL 105
           Y+YINSTGTTRD  ET+
Sbjct: 163 YIYINSTGTTRDDGETV 179

[Close]

BLAST of CmoCh12G010720 vs. TAIR 10
Match: AT1G09130.2 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 133.7 bits (335), Expect = 9.7e-32
Identity = 60/77 (77.92%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 28  KVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPI 87
           +VERSV+YNEH  R PPP+LPS+LL GRI+YIGMP VPAVTELV+AELMYLQW+DP+EPI
Sbjct: 103 QVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPI 162

Query: 88  YLYINSTGTTRDADETL 105
           Y+YINSTGTTRD  ET+
Sbjct: 163 YIYINSTGTTRDDGETV 179

[Close]

BLAST of CmoCh12G010720 vs. TAIR 10
Match: AT1G09130.3 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 133.7 bits (335), Expect = 9.7e-32
Identity = 60/77 (77.92%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 28  KVERSVSYNEHTSRRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPI 87
           +VERSV+YNEH  R PPP+LPS+LL GRI+YIGMP VPAVTELV+AELMYLQW+DP+EPI
Sbjct: 103 QVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPI 162

Query: 88  YLYINSTGTTRDADETL 105
           Y+YINSTGTTRD  ET+
Sbjct: 163 YIYINSTGTTRDDGETV 179

[Close]

BLAST of CmoCh12G010720 vs. TAIR 10
Match: AT4G17040.1 (CLP protease R subunit 4 )

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-16
Identity = 36/68 (52.94%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 42  RPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPIYLYINSTGTTRDAD 101
           +PPP+L S L   RI+Y+GM  VP+VTEL++AE +YLQ+ D  +PIYLYINSTGTT++ +
Sbjct: 101 QPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGE 160

Query: 102 ETLLDPQS 110
           +   D ++
Sbjct: 161 KLGYDTEA 168

[Close]

BLAST of CmoCh12G010720 vs. TAIR 10
Match: AT1G49970.1 (CLP protease proteolytic subunit 1 )

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-16
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 41  RRPPPELPSLLLHGRIIYIGMPFVPAVTELVIAELMYLQWMDPREPIYLYINSTGTTRDA 100
           R  PP+LPSLLL  RI Y+GMP VPAVTEL++A+ M+L + +P +PIYLYINS GT  + 
Sbjct: 166 RTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEK 225

Query: 101 DETL 105
            ET+
Sbjct: 226 METV 229

The following BLAST results are available for this feature:

BLAST of CmoCh12G010720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L770	1.4e-30	77.92	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ...	[more]
Q8LB10	2.1e-15	52.94	ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ...	[more]
Q9XJ35	3.6e-15	59.38	ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic ...	[more]
Q9L4P4	2.0e-13	52.05	Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus el...	[more]
P74466	1.7e-12	48.05	Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp...	[more]

BLAST of CmoCh12G010720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FAM0	4.3e-43	98.86	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-...	[more]
A0A6J1HQN5	8.9e-41	94.32	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-...	[more]
A0A5J5BQP1	1.7e-31	88.31	ATP-dependent Clp protease proteolytic subunit OS=Nyssa sinensis OX=561372 GN=F0...	[more]
A0A1J6JKV5	1.7e-31	73.12	ATP-dependent Clp protease proteolytic subunit OS=Nicotiana attenuata OX=49451 G...	[more]
A0A1U7X7K8	1.7e-31	73.12	ATP-dependent Clp protease proteolytic subunit OS=Nicotiana sylvestris OX=4096 G...	[more]

BLAST of CmoCh12G010720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09130.1	9.7e-32	77.92	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	[more]
AT1G09130.2	9.7e-32	77.92	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	[more]
AT1G09130.3	9.7e-32	77.92	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	[more]
AT4G17040.1	1.5e-16	52.94	CLP protease R subunit 4	[more]
AT1G49970.1	2.6e-16	59.38	CLP protease proteolytic subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 49..95 e-value: 1.6E-7 score: 31.4
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 28..99
None	No IPR available	GENE3D	3.90.226.10		coord: 29..107 e-value: 1.6E-13 score: 52.6
None	No IPR available	PANTHER	PTHR10381:SF6	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 3, CHLOROPLASTIC	coord: 28..99
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	52096	ClpP/crotonase	coord: 42..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G010720.1	CmoCh12G010720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009368	endopeptidase Clp complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009526	plastid envelope
molecular_function	GO:0051117	ATPase binding
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0004252	serine-type endopeptidase activity