CmoCh12G010710 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G010710
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionATP-dependent caseinolytic (Clp) protease/crotonase family protein
LocationCmo_Chr12: 9852214 .. 9854363 (-)
RNA-Seq ExpressionCmoCh12G010710
SyntenyCmoCh12G010710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGACCATTGTACATGGATGTACGACAAGAGAGAGAATTTGGAGTTATAGACAAGGTAACCTAACGCACTGATTTTTTTAGGGTATAACACGATGCACATGCTTTGTTGCTTATAATTGTAGTATATAATTCTAATTTGGCAAGTTGGCACCAGATTCTTTGGCGCGGTCAGGAGACGATTATAGCTGATGTCGCTGCCCCAGAGGAATGAGACAAAGGAGCTGGCATCAAAGTTGTAGATGAGCTCTAGATTCCCTCTCAAATCTACTCTCCATTCATAGCAAGTAAGCCGGTTGTTTCTCCTTTTTGCAAACTCAAAACGTTGTTCCATCCTCCAGTATTCAAGTTGCAAATGTCTTAGAAAGCTAATGGAATTTGATTTTCTTTTTGTTGGCAGTGTTTCACTGGAATTGGATCAAGGTCCGTGCCTCTATCTCTCTAGATCATAGACTGGTAATTACTTTTAGTACATTTAGTTCTTAAAATTGAGGAAAATTTGCTTTACTTAGTAGTTGAAATCTTAACAATTCCATCTCAATGTTGTAAATACTGTATGGGTTGCACATGCCTTCCATAAGAAAAGGCTAAATTATAAAATAAGTTCACCTGTTTAAAATATAACCTTATTCTTTTACAAGTTTGCAATGTTATCTTTGACTTTTCATGAGTGTTTGAAAAATGCCATTGAAGTAGCTAGAATGATGGATGAAATCTAGACGTGTCTAAATGCTATTTTTCATACTTAATCCACTATTGAGTCGTTCTAAGTCCGTCAGATCGATTTTTCGTTCAATGTTCCAATGGGTTTCAACTCCGAGAGGAATTTTGAAACCTTTATAATAGGACAATGATAATATTGCAACTTTTAAAAGAAGAGGTATTTTTGAAACAATTGACAAGGTTTAGGCGTCTTTATTTATTTATTTAGCCGGAAAAACATAACTATCAGTAACCACCTTGGATTGGTCTAATGGGTTTATAAGAGCTATCTAAAGAATGAAAGGCTTTGCGAGAACAAGTTCGTCAGGGTGGCTACTTACCTAGAATCTAATATCGTATTGTGAGATTCTACGTCAATTGGAGAGGGGAACGAGTGCTAGTGAAGACGTTGGGCCTTGGAGGAGGGTGGATTATGAGATACCACATCTGTTGGAGAGGGGAACGAAACATTTTTTTTACAAGGGTGTAGAAACCTCTCCCTAGCAGACACGAGAGAGGGAAACGAAACATTTTTTTATAAGGGTGTAGAAACCTCTTCTTAGCAGACACGAGAGAGGGGAACGAAACATTTTTTTATAAGGGTGTAGAAACCTCTCCCTAGCAGACACAAGAGAGGGGAACAAAGCATTTTTTTATAAGGGTGTAGAAACCTCTCCCTAGCAGACACGAGAGAGGGGAACAAAACATTTTTTTGTAAGGGTGTAGAAACCTCTTCCCAGCAGACATGAGAGAGGAGAATGAAACATTTTTTATAAGGGTGTAGAAACCTCTCCCTAGAAGACCCGTTTTAAAACCCTTGAGGGGAAGGCCGAAAGGAAAAGCCCAAAGAAGATAATATCTACTAACGGTGGGCTTGAGCTGTTACACATACAATTTTAGCAATCATGAGAGAGGGGAACGAAACATTTTTATAAGGGTGTAGAAACCTCTCCCTAGTAGACGTGTTTTAAAAATCTTGAGGGGAAGGCCGGAAGGAAAAGCTCAAAGAGACAATATCTACTAACGGTGGGCTTGAGCTGTTACACATACAATTTTAGCAATCAAATAGAAAATGTCTAGGGAGACAGACCCACGGAGATATCAAATAATAATAATAATAATAATAATAAAAACACCAATAATGTAGCCTCCTCCAACTTGATTGTTTTTAATACATTATCTTGGAAGATTAGTTAGATGATTTTGACAGTTAACACTCTGTTCTTTCTCATGCATTGTTGGATCCAACTAAATTTCCAACATGGTGGAATGAGTTTTATTTTTCTACTCTCTGTCTCTTAAATGTTTGCAGTTTCAGAAGTTGCAAGGGAATGCTTTCAAGTTGCACATACTCCCACGTTGGATTGCAGAGTCAACTGCAAGTTATCAGAGATCATCAAGAAAATCATTATCTTTGCTGGAAGATTGTCTCCCCATGACAGCTGA

mRNA sequence

ATGAGAAGACCATTGTACATGGATGTACGACAAGAGAGAGAATTTGGAGTTATAGACAAGATTCTTTGGCGCGATTCCCTCTCAAATCTACTCTCCATTCATAGCAATGTTTCACTGGAATTGGATCAAGTTTCAGAAGTTGCAAGGGAATGCTTTCAAGTTGCACATACTCCCACGTTGGATTGCAGAGTCAACTGCAAGTTATCAGAGATCATCAAGAAAATCATTATCTTTGCTGGAAGATTGTCTCCCCATGACAGCTGA

Coding sequence (CDS)

ATGAGAAGACCATTGTACATGGATGTACGACAAGAGAGAGAATTTGGAGTTATAGACAAGATTCTTTGGCGCGATTCCCTCTCAAATCTACTCTCCATTCATAGCAATGTTTCACTGGAATTGGATCAAGTTTCAGAAGTTGCAAGGGAATGCTTTCAAGTTGCACATACTCCCACGTTGGATTGCAGAGTCAACTGCAAGTTATCAGAGATCATCAAGAAAATCATTATCTTTGCTGGAAGATTGTCTCCCCATGACAGCTGA

Protein sequence

MRRPLYMDVRQEREFGVIDKILWRDSLSNLLSIHSNVSLELDQVSEVARECFQVAHTPTLDCRVNCKLSEIIKKIIIFAGRLSPHDS
Homology
[Close]
BLAST of CmoCh12G010710 vs. TAIR 10
Match: AT1G09130.1 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.9e-04
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 0 

Query: 1   MRRPLYMDVRQEREFGVIDKILWR 25
           MRRP YMD  + +EFGVID+ILWR
Sbjct: 282 MRRPYYMDAPKAKEFGVIDRILWR 305

[Close]
BLAST of CmoCh12G010710 vs. TAIR 10
Match: AT1G09130.2 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.9e-04
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 0 

Query: 1   MRRPLYMDVRQEREFGVIDKILWR 25
           MRRP YMD  + +EFGVID+ILWR
Sbjct: 282 MRRPYYMDAPKAKEFGVIDRILWR 305

[Close]
BLAST of CmoCh12G010710 vs. TAIR 10
Match: AT1G09130.3 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.9e-04
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 0 

Query: 1   MRRPLYMDVRQEREFGVIDKILWR 25
           MRRP YMD  + +EFGVID+ILWR
Sbjct: 282 MRRPYYMDAPKAKEFGVIDRILWR 305

The following BLAST results are available for this feature:
BLAST of CmoCh12G010710 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh12G010710 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh12G010710 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G09130.12.9e-0470.83ATP-dependent caseinolytic (Clp) protease/crotonase family protein [more]
AT1G09130.22.9e-0470.83ATP-dependent caseinolytic (Clp) protease/crotonase family protein [more]
AT1G09130.32.9e-0470.83ATP-dependent caseinolytic (Clp) protease/crotonase family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G010710.1CmoCh12G010710.1mRNA