CmoCh12G010610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G010610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	CST complex subunit TEN1
Location	Cmo_Chr12: 9798445 .. 9800645 (-)
RNA-Seq Expression	CmoCh12G010610
Synteny	CmoCh12G010610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTATTTCTTTTAGTCCGAAATCCGAATGTAGTTCGAAGAATTTGTTACCTTAGTGGAATGCATGATGAATCTGTTTGCTAGTGGAAACTTTACTGGATGGAGTATATTTAAGGTTTCCAAGATCAAAATGACATGAAATGGACAAGGAATTTGGTAAAAACGCAACTTATTATGTGTAAAGGAGTGGGGGACTTTATTGTTGCTTGGAAGTGGGAAGAAGAATCCTGTGATGGGAAGTTGACAATGGCTGCTTGATTGAATAACTTTCTGAATGTTTATAGTAGGTAATCATAAATCATAATTCAATTTAGAGACGGGTTGGGTTAAAAGCATTGTGTGAAGATCTGAGACTGTGTGACATGGTAACATGTGACATGTTAGAGTAAAGAACAATGGTTGAAGGGCTAATTTCGTACTTTGTAAGACTAATTTAATAGTTATTCTATCATATGTGAGATCCCACCTCGGTTGGAGAGGGAAACGAAACATTCCTTATAGAATGTAGAAACCTTTCCCTAGTAGACGCGTTTCAGAGCCTTAAGGGGAAGCCCAAAAGGGAAAGTCCAAAGAGGATAATATCTGCTAGCAATGGGCTTGAACTGTTACCACAGACACTGGGTCTCCAAGGGGGTGGATTGTGCGATCCTACATCGGTTAGAGAGGAGAAAAAAATATTCTTTATAAGAGTGAAACCTTTTCCGTAGTAGACGCGTTTCAAAACTTTGAGGGAAAGCCCAAAGAGGACAATAACTGCAAGCGGTGGGCTTGAGCTGTTACATTTTGTCTTACGAAGAATTTATTGATTGTTTACTTAGATTTACATATCTTTCCTGTAGGATTTGACTCTTAGTAGGGAGCAAAGTGCTTTTTGTGAGAAAAAGAATTATACTGGATGGCATCGGCTGCAATAAAATCAGGGGCGTTGGTTTCACTGAAAGACCTGAAGCCATCTTCAGAGTTCTTCAAGGATGGGGCTTCACTTAGAGTTACTGGAAAGTAAAGTTTGCTAGAATTTGTCTCAATATCTGTCTGTTTAAAATTTGGGCAGCCTTGATATGCTTAGCAATGAAGTGATACACTCACCTTTTCTCCTCTGCATGTTCACTATTATCATAACGTCAAAATTCATAGATTTGGATTTGATATGTATTCAACTTTTTCTAACGTAATGGTTCACTGTAGGTGACATAATCAATGAATTCGCATATCCTTCAGATTGATATTTTAATAGCATTATTCGATGTTGAATTTCTTGGCTGGTGCAACCTTATCGGATGTTGAAGTGATAGATTTCCTTGGCTATTGTGAATGTTCAATGTCTGATGTGCATTTTCCAGAAACCAGATATTTAAAATCCATAACTAAGGCATGGACCCACCATTTAATCAAAATCTGAGATCAACTTTGAAACATAATCTGATAGTGCCAACATCATGTAATCCTCTTCTTACTTAATGTGACAACAGATTATTTGTTGATGACCTTTAATGAGGAACTTAATCTTAACGTTCAAATAGTTCTTGATGCATATGCAACCTTTTTTTTCAATTTATTACTATGAGATATATGACAAAAATACTATTGAATCTTTACAATATTTCCTTTCCTTTACTCTTTCAGTGACAATGAAAGTAATTACCATCTGTTCTTCAAGGGCAGGTTAGTGGAGTATTCTGTGGAGACAGCCATTGCCATAATCGTCGATGGAAATGTTAGCTTGAAGATCGACACACGGCATCTGAGAGAGCTTACCTTTCGCATTGGCTCCATATATCAATTTATTGGTGAACTACTTGTTCAATCAGAAAATGAGGTGAAATACCATTTTGTGACTATTTTCTATCTCTTTGTCTCAACGTTCACACACAAGAGTCTTGACTGGTGCGGTATTTTCAGGCAACTCTGCAGGCACGTGTTGGTAGGAATGTTGACGGCATTGACCTGAACCTGTATCATCAGTCCCTACAACTGTTAAAACAATTTCAGGCTGATCACTTAAACAAGAGAACAAATTAGTTCACTTTTCACCTTGAGGAGGTAATCCAGCTTATCTTTGAAATTTTAAAGTAGGAATGACTTTTTACTTTTACTTTTGCGTCTGTAAAGAAGATCTCAGTAAGTAAATTACTTTTTTTACTAATATCTTTTATTGAGTGAATATCTTTCTGTCAAAAATGGGGTTTTTTTTTTTTTTGCACA

mRNA sequence

AGTTATTTCTTTTAGTCCGAAATCCGAATGTAGTTCGAAGAATTTGTTACCTTAGTGGAATGCATGATGAATCTGTTTGCTAGTGGAAACTTTACTGGATGGAGTATATTTAAGGTTTCCAAGATCAAAATGACATGAAATGGACAAGGAATTTGGTAAAAACGCAACTTATTATGTGTAAAGGAGTGGGGGACTTTATTGTTGCTTGGAAGTGGGAAGAAGAATCCTGTGATGGGAAGTTGACAATGGCTGCTTGATTGAATAACTTTCTGAATGTTTATAGTAGGTAATCATAAATCATAATTCAATTTAGAGACGGGTTGGGTTAAAAGCATTGTGTGAAGATCTGAGACTGTGTGACATGGTAACATGTGACATGTTAGAGTAAAGAACAATGGTTGAAGGGCTAATTTCGTACTTTGTAAGACTAATTTAATAGTTATTCTATCATATGTGAGATCCCACCTCGGTTGGAGAGGGAAACGAAACATTCCTTATAGAATGTAGAAACCTTTCCCTAGTAGACGCGTTTCAGAGCCTTAAGGGGAAGCCCAAAAGGGAAAGTCCAAAGAGGATAATATCTGCTAGCAATGGGCTTGAACTGTTACCACAGACACTGGGTCTCCAAGGGGGTGGATTGTGCGATCCTACATCGGTTAGAGAGGAGAAAAAAATATTCTTTATAAGAGTGAAACCTTTTCCGTAGTAGACGCGTTTCAAAACTTTGAGGGAAAGCCCAAAGAGGACAATAACTGCAAGCGGTGGGCTTGAGCTGTTACATTTTGTCTTACGAAGAATTTATTGATTGTTTACTTAGATTTACATATCTTTCCTGTAGGATTTGACTCTTAGTAGGGAGCAAAGTGCTTTTTGTGAGAAAAAGAATTATACTGGATGGCATCGGCTGCAATAAAATCAGGGGCGTTGGTTTCACTGAAAGACCTGAAGCCATCTTCAGAGTTCTTCAAGGATGGGGCTTCACTTAGAGTTACTGGAAAGTTAGTGGAGTATTCTGTGGAGACAGCCATTGCCATAATCGTCGATGGAAATGTTAGCTTGAAGATCGACACACGGCATCTGAGAGAGCTTACCTTTCGCATTGGCTCCATATATCAATTTATTGGTGAACTACTTGTTCAATCAGAAAATGAGGCAACTCTGCAGGCACGTGTTGGTAGGAATGTTGACGGCATTGACCTGAACCTGTATCATCAGTCCCTACAACTGTTAAAACAATTTCAGGCTGATCACTTAAACAAGAGAACAAATTAGTTCACTTTTCACCTTGAGGAGGTAATCCAGCTTATCTTTGAAATTTTAAAGTAGGAATGACTTTTTACTTTTACTTTTGCGTCTGTAAAGAAGATCTCAGTAAGTAAATTACTTTTTTTACTAATATCTTTTATTGAGTGAATATCTTTCTGTCAAAAATGGGGTTTTTTTTTTTTTTGCACA

Coding sequence (CDS)

ATGGCATCGGCTGCAATAAAATCAGGGGCGTTGGTTTCACTGAAAGACCTGAAGCCATCTTCAGAGTTCTTCAAGGATGGGGCTTCACTTAGAGTTACTGGAAAGTTAGTGGAGTATTCTGTGGAGACAGCCATTGCCATAATCGTCGATGGAAATGTTAGCTTGAAGATCGACACACGGCATCTGAGAGAGCTTACCTTTCGCATTGGCTCCATATATCAATTTATTGGTGAACTACTTGTTCAATCAGAAAATGAGGCAACTCTGCAGGCACGTGTTGGTAGGAATGTTGACGGCATTGACCTGAACCTGTATCATCAGTCCCTACAACTGTTAAAACAATTTCAGGCTGATCACTTAAACAAGAGAACAAATTAG

Protein sequence

MASAAIKSGALVSLKDLKPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVSLKIDTRHLRELTFRIGSIYQFIGELLVQSENEATLQARVGRNVDGIDLNLYHQSLQLLKQFQADHLNKRTN

Homology

[Close]

BLAST of CmoCh12G010610 vs. ExPASy Swiss-Prot
Match: Q6NME7 (CST complex subunit TEN1 OS=Arabidopsis thaliana OX=3702 GN=TEN1 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-31
Identity = 70/122 (57.38%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 1   MASAAIKSGALVSLKDLKPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVSLKIDTR 60
           MA + I+ G  ++L++L PSS F+K+G SLRVT  L  YSVETAI +I DG  SLKI+T+
Sbjct: 1   MAKSQIEPGVPITLQELYPSSLFYKEGVSLRVTAMLRGYSVETAIGVIEDGGRSLKINTQ 60

Query: 61  HLRELTFRIGSIYQFIGEL-LVQSENEATLQARVGRNVDGIDLNLYHQSLQLLKQFQADH 120
           ++R+++FR+GSIYQFIGEL + Q  NEA LQAR GRNVDGID+NLY ++++LL+QF  + 
Sbjct: 61  NIRDVSFRVGSIYQFIGELHIEQPNNEAILQARTGRNVDGIDMNLYRKTIELLRQFLKEE 120

Query: 121 LN 122
            N
Sbjct: 121 DN 122

[Close]

BLAST of CmoCh12G010610 vs. ExPASy TrEMBL
Match: A0A6J1FHR1 (CST complex subunit TEN1 OS=Cucurbita moschata OX=3662 GN=LOC111444067 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MASAAIKSGALVSLKDLKPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVSLKIDTR 60
           MASAAIKSGALVSLKDLKPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVSLKIDTR
Sbjct: 1   MASAAIKSGALVSLKDLKPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVSLKIDTR 60

Query: 61  HLRELTFRIGSIYQFIGELLVQSENEATLQARVGRNVDGIDLNLYHQSLQLLKQFQADHL 120
           HLRELTFRIGSIYQFIGELLVQSENEATLQARVGRNVDGIDLNLYHQSLQLLKQFQADHL
Sbjct: 61  HLRELTFRIGSIYQFIGELLVQSENEATLQARVGRNVDGIDLNLYHQSLQLLKQFQADHL 120

Query: 121 NKRTN 126
           NKRTN
Sbjct: 121 NKRTN 125

[Close]

BLAST of CmoCh12G010610 vs. ExPASy TrEMBL
Match: A0A6J1HSH0 (CST complex subunit TEN1-like OS=Cucurbita maxima OX=3661 GN=LOC111465725 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.5e-59
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MASAAIKSGALVSLKDLKPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVSLKIDTR 60
           MASAAIKSGALVSLKDLKPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVSLKIDT+
Sbjct: 1   MASAAIKSGALVSLKDLKPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVSLKIDTQ 60

Query: 61  HLRELTFRIGSIYQFIGELLVQSENEATLQARVGRNVDGIDLNLYHQSLQLLKQFQADHL 120
           HLRELTFRIGSIYQFIGELLVQSENEATLQARVGRNVDGIDLNLYHQSLQLLKQFQADHL
Sbjct: 61  HLRELTFRIGSIYQFIGELLVQSENEATLQARVGRNVDGIDLNLYHQSLQLLKQFQADHL 120

Query: 121 NKRTN 126
           NKRTN
Sbjct: 121 NKRTN 125

[Close]

BLAST of CmoCh12G010610 vs. ExPASy TrEMBL
Match: A0A6J1DRX0 (CST complex subunit TEN1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023280 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 8.2e-56
Identity = 115/125 (92.00%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MASAAIKSGALVSLKDLKPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVSLKIDTR 60
           MAS+AIKSGALV LKDLKPSSEFFKDGASLRVTGKLVEYSVETA+A+IVDGNV+LKIDT+
Sbjct: 1   MASSAIKSGALVPLKDLKPSSEFFKDGASLRVTGKLVEYSVETAMAVIVDGNVNLKIDTQ 60

Query: 61  HLRELTFRIGSIYQFIGELLVQSENEATLQARVGRNVDGIDLNLYHQSLQLLKQFQADHL 120
           HLREL+FRIGSIYQFIGELLVQS+NEATLQARVGRNVDGIDLNLYHQSLQLL+QFQADH 
Sbjct: 61  HLRELSFRIGSIYQFIGELLVQSDNEATLQARVGRNVDGIDLNLYHQSLQLLRQFQADHF 120

Query: 121 NKRTN 126
           NKRTN
Sbjct: 121 NKRTN 125

[Close]

BLAST of CmoCh12G010610 vs. ExPASy TrEMBL
Match: A0A1S3BY71 (CST complex subunit TEN1 OS=Cucumis melo OX=3656 GN=LOC103494489 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.6e-54
Identity = 116/126 (92.06%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MASAAIKSGALVSLKDL-KPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVSLKIDT 60
           MA +AIKSGALVSLKDL KPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNV+LKIDT
Sbjct: 1   MALSAIKSGALVSLKDLMKPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVNLKIDT 60

Query: 61  RHLRELTFRIGSIYQFIGELLVQSENEATLQARVGRNVDGIDLNLYHQSLQLLKQFQADH 120
           +HLREL+ RIGSIYQFIGELLVQS+NEA LQARVGRNVDGIDLNLYHQSLQLL+QFQADH
Sbjct: 61  QHLRELSIRIGSIYQFIGELLVQSDNEAILQARVGRNVDGIDLNLYHQSLQLLRQFQADH 120

Query: 121 LNKRTN 126
           LNKRTN
Sbjct: 121 LNKRTN 126

[Close]

BLAST of CmoCh12G010610 vs. ExPASy TrEMBL
Match: A0A0A0LFY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G032760 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 9.3e-52
Identity = 113/126 (89.68%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 1   MASAAIKSGALVSLKDL-KPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVSLKIDT 60
           MA +AIKSGALVSLKDL  PSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNV+LKIDT
Sbjct: 1   MALSAIKSGALVSLKDLMHPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVNLKIDT 60

Query: 61  RHLRELTFRIGSIYQFIGELLVQSENEATLQARVGRNVDGIDLNLYHQSLQLLKQFQADH 120
           +HL EL+ RIGSIYQFIGELLVQS+NEA L+ARVGRNVDGIDLNLYHQSLQLL+QFQADH
Sbjct: 61  QHLIELSIRIGSIYQFIGELLVQSDNEAILKARVGRNVDGIDLNLYHQSLQLLRQFQADH 120

Query: 121 LNKRTN 126
           LNKRTN
Sbjct: 121 LNKRTN 126

[Close]

BLAST of CmoCh12G010610 vs. TAIR 10
Match: AT1G56260.1 (unknown protein; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 136.3 bits (342), Expect = 1.6e-32
Identity = 70/122 (57.38%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 1   MASAAIKSGALVSLKDLKPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVSLKIDTR 60
           MA + I+ G  ++L++L PSS F+K+G SLRVT  L  YSVETAI +I DG  SLKI+T+
Sbjct: 1   MAKSQIEPGVPITLQELYPSSLFYKEGVSLRVTAMLRGYSVETAIGVIEDGGRSLKINTQ 60

Query: 61  HLRELTFRIGSIYQFIGEL-LVQSENEATLQARVGRNVDGIDLNLYHQSLQLLKQFQADH 120
           ++R+++FR+GSIYQFIGEL + Q  NEA LQAR GRNVDGID+NLY ++++LL+QF  + 
Sbjct: 61  NIRDVSFRVGSIYQFIGELHIEQPNNEAILQARTGRNVDGIDMNLYRKTIELLRQFLKEE 120

Query: 121 LN 122
            N
Sbjct: 121 DN 122

The following BLAST results are available for this feature:

BLAST of CmoCh12G010610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NME7	2.3e-31	57.38	CST complex subunit TEN1 OS=Arabidopsis thaliana OX=3702 GN=TEN1 PE=1 SV=1	[more]

BLAST of CmoCh12G010610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHR1	1.2e-59	100.00	CST complex subunit TEN1 OS=Cucurbita moschata OX=3662 GN=LOC111444067 PE=4 SV=1	[more]
A0A6J1HSH0	3.5e-59	99.20	CST complex subunit TEN1-like OS=Cucurbita maxima OX=3661 GN=LOC111465725 PE=4 S...	[more]
A0A6J1DRX0	8.2e-56	92.00	CST complex subunit TEN1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC1110232...	[more]
A0A1S3BY71	7.6e-54	92.06	CST complex subunit TEN1 OS=Cucumis melo OX=3656 GN=LOC103494489 PE=4 SV=1	[more]
A0A0A0LFY0	9.3e-52	89.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G032760 PE=4 SV=1	[more]

BLAST of CmoCh12G010610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56260.1	1.6e-32	57.38	unknown protein; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029146	CST complex subunit Ten1, animal and plant type	PFAM	PF15490	Ten1_2	coord: 6..118 e-value: 2.6E-31 score: 107.8
None	No IPR available	GENE3D	2.40.50.140		coord: 7..121 e-value: 3.8E-32 score: 112.6
None	No IPR available	PANTHER	PTHR33905	CST COMPLEX SUBUNIT TEN1	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G010610.1	CmoCh12G010610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051974	negative regulation of telomerase activity
biological_process	GO:0006457	protein folding
biological_process	GO:0009408	response to heat
biological_process	GO:0048367	shoot system development
biological_process	GO:0019827	stem cell population maintenance
biological_process	GO:0000723	telomere maintenance
cellular_component	GO:1990879	CST complex
molecular_function	GO:0044183	protein folding chaperone
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0010521	telomerase inhibitor activity