CmoCh12G010250 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G010250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr12: 9571040 .. 9571285 (-)
RNA-Seq Expression	CmoCh12G010250
Synteny	CmoCh12G010250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTAAGGCGACGGATTCGAAGGCGGTCATGACGGACCAGACGAGGTCGTCGACAACCGGAGTGTTGAGAAGGCCGCGAGGCAAACGGCGAAACCAGGCGGAGCTCCAGTTCCATGAGAAAAGCGAGGAGAGGACATCGGTCCACCGGAATATGGAAGATCTGATGGAAAATTCGAATTCCGGCCACCAGAATGCCGATCTCGATGAACTTCCCGCCATTGCTGCTTCTTCGACTCCTTGA

mRNA sequence

ATGGAGACTAAGGCGACGGATTCGAAGGCGGTCATGACGGACCAGACGAGGTCGTCGACAACCGGAGTGTTGAGAAGGCCGCGAGGCAAACGGCGAAACCAGGCGGAGCTCCAGTTCCATGAGAAAAGCGAGGAGAGGACATCGGTCCACCGGAATATGGAAGATCTGATGGAAAATTCGAATTCCGGCCACCAGAATGCCGATCTCGATGAACTTCCCGCCATTGCTGCTTCTTCGACTCCTTGA

Coding sequence (CDS)

ATGGAGACTAAGGCGACGGATTCGAAGGCGGTCATGACGGACCAGACGAGGTCGTCGACAACCGGAGTGTTGAGAAGGCCGCGAGGCAAACGGCGAAACCAGGCGGAGCTCCAGTTCCATGAGAAAAGCGAGGAGAGGACATCGGTCCACCGGAATATGGAAGATCTGATGGAAAATTCGAATTCCGGCCACCAGAATGCCGATCTCGATGAACTTCCCGCCATTGCTGCTTCTTCGACTCCTTGA

Protein sequence

METKATDSKAVMTDQTRSSTTGVLRRPRGKRRNQAELQFHEKSEERTSVHRNMEDLMENSNSGHQNADLDELPAIAASSTP

Homology

[Close]

BLAST of CmoCh12G010250 vs. ExPASy TrEMBL
Match: A0A5A7U3P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001510 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.8e-19
Identity = 61/81 (75.31%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 1  METKATDSKAVMTDQTRSSTTGVLRRPRGKRRNQA-ELQFHEKSEERTSVHRNMEDLMEN 60
          METKATDSKAV+TDQ  SST  +LRRPR +RRNQA ELQFHEKSEER SVHRNMEDL EN
Sbjct: 1  METKATDSKAVVTDQRTSSTMEMLRRPRRQRRNQAEELQFHEKSEERRSVHRNMEDLKEN 60

Query: 61 SNSGHQNADLDELPAIAASST 81
          SNS  +NADL ++PAIA S++
Sbjct: 61 SNSVQRNADLGDVPAIALSAS 81

[Close]

BLAST of CmoCh12G010250 vs. ExPASy TrEMBL
Match: A0A0A0LGJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034630 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-06
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1  METKATDSKAVMTDQTRSSTTGVLRRPRGKRRNQA-ELQFHEKSEERTSVHRNM 54
          METKATDSKAV+TDQ  SS    LRRPR +RRNQA E+QFHEKSEER+ + R +
Sbjct: 1  METKATDSKAVVTDQRTSSIMEKLRRPRRQRRNQAEEVQFHEKSEERSLLLRKV 54

The following BLAST results are available for this feature:

BLAST of CmoCh12G010250 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh12G010250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3P7	1.8e-19	75.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LGJ2	3.8e-06	68.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034630 PE=4 SV=1	[more]

BLAST of CmoCh12G010250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G010250.1	CmoCh12G010250.1	mRNA