CmoCh12G010080 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G010080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-H2 finger protein ATL56-like
Location	Cmo_Chr12: 9440364 .. 9440891 (+)
RNA-Seq Expression	CmoCh12G010080
Synteny	CmoCh12G010080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCTTCAAGATTCCACCGCCGCCCTCGCCGGCGACCCTCCACCGCCTAAGCCAGAGGCCAAAGTCCTGTCTCTGCTCCTCAAGGTCTCCATTATGATCGTCTTAACCACCCTCTTCTTCGTCTTCCTCGGCCTCGCCACTGCCCTCCTCCTCATCTATCCCTGCGTCGCTAGCGTCCTTCACCGCCGACGACGACGCCGCCATCGCCGCCGTTCCCAATTCACCGATTCCTCATCTGGGTTCTCTAATCGTGACCTCAAAAAGCTCCTCCAGTTTCGATTCTCCAATTGGGTCAACCCCCACTCTCAAATTGACTGCCCTATTTGCCTTGGTGGGTTTAGAAAAGGTCAGTGGTGTAGAAAACTTGGTGGGTGCGGCCATATTTATCACCGGAAGTGCATCGATTCGTGGTTGGTTAGGGTTTCTGCTTGCCCCCTTTGCCGGAGCTCCGTCCGATTGGATATGGAAGAAAATCAAATGGATTGTGCAAATTATCGGAGCTATGAGATTTTGTATGCTCCGTAA

mRNA sequence

ATGCCCCTTCAAGATTCCACCGCCGCCCTCGCCGGCGACCCTCCACCGCCTAAGCCAGAGGCCAAAGTCCTGTCTCTGCTCCTCAAGGTCTCCATTATGATCGTCTTAACCACCCTCTTCTTCGTCTTCCTCGGCCTCGCCACTGCCCTCCTCCTCATCTATCCCTGCGTCGCTAGCGTCCTTCACCGCCGACGACGACGCCGCCATCGCCGCCGTTCCCAATTCACCGATTCCTCATCTGGGTTCTCTAATCGTGACCTCAAAAAGCTCCTCCAGTTTCGATTCTCCAATTGGGTCAACCCCCACTCTCAAATTGACTGCCCTATTTGCCTTGGTGGGTTTAGAAAAGGTCAGTGGTGTAGAAAACTTGGTGGGTGCGGCCATATTTATCACCGGAAGTGCATCGATTCGTGGTTGGTTAGGGTTTCTGCTTGCCCCCTTTGCCGGAGCTCCGTCCGATTGGATATGGAAGAAAATCAAATGGATTGTGCAAATTATCGGAGCTATGAGATTTTGTATGCTCCGTAA

Coding sequence (CDS)

ATGCCCCTTCAAGATTCCACCGCCGCCCTCGCCGGCGACCCTCCACCGCCTAAGCCAGAGGCCAAAGTCCTGTCTCTGCTCCTCAAGGTCTCCATTATGATCGTCTTAACCACCCTCTTCTTCGTCTTCCTCGGCCTCGCCACTGCCCTCCTCCTCATCTATCCCTGCGTCGCTAGCGTCCTTCACCGCCGACGACGACGCCGCCATCGCCGCCGTTCCCAATTCACCGATTCCTCATCTGGGTTCTCTAATCGTGACCTCAAAAAGCTCCTCCAGTTTCGATTCTCCAATTGGGTCAACCCCCACTCTCAAATTGACTGCCCTATTTGCCTTGGTGGGTTTAGAAAAGGTCAGTGGTGTAGAAAACTTGGTGGGTGCGGCCATATTTATCACCGGAAGTGCATCGATTCGTGGTTGGTTAGGGTTTCTGCTTGCCCCCTTTGCCGGAGCTCCGTCCGATTGGATATGGAAGAAAATCAAATGGATTGTGCAAATTATCGGAGCTATGAGATTTTGTATGCTCCGTAA

Protein sequence

MPLQDSTAALAGDPPPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVASVLHRRRRRRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMDCANYRSYEILYAP

Homology

[Close]

BLAST of CmoCh12G010080 vs. ExPASy Swiss-Prot
Match: Q9ZV51 (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.6e-33
Identity = 74/147 (50.34%), Postives = 99/147 (67.35%), Query Frame = 0


Query: 15  PPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVASVLHRRRRRRHRRRSQ 74
           PPPKP+ ++LSL L   IM  +  LF V +G+A+ L+L  P + S LHR  RRR R R Q
Sbjct: 21  PPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLIL--PLLLSSLHRHHRRRRRNRRQ 80

Query: 75  FTDSSSGFSNRDLKKLLQFRFSN-WVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRK 134
             +SS G S+R +KKL QF+FS        + DC +C  GFR+GQWCR L GCGH++HRK
Sbjct: 81  --ESSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRK 140

Query: 135 CIDSWLVRVSACPLCRSSVRLDMEENQ 161
           C+D+WL++ S CP+CR+ VRL  E+ Q
Sbjct: 141 CVDTWLLKASTCPICRARVRLWEEDPQ 163

[Close]

BLAST of CmoCh12G010080 vs. ExPASy Swiss-Prot
Match: Q9M0C3 (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.5e-23
Identity = 58/146 (39.73%), Postives = 82/146 (56.16%), Query Frame = 0


Query: 14  PPPPKPE-----AKVLS--LLLKVSIMIVLTTLFFVFLGLATALLLIYPCVASVLHRRRR 73
           PPPPK        K+LS  L+  + I + +T   F+   L       +       +R R 
Sbjct: 19  PPPPKANTKNLPTKILSNFLIGLIMIPVAITAFIFILTSLGFTFFFAFYWFLQRNYRHRL 78

Query: 74  RRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGC 133
           RRHRR     + S G S R +K+L QF++    + +   DC +C+ GFR+GQWCRKL  C
Sbjct: 79  RRHRRH----EYSDGLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDGFRQGQWCRKLPRC 138

Query: 134 GHIYHRKCIDSWLVRVSACPLCRSSV 153
           GH++HRKC+D WL++VS CP+CR  V
Sbjct: 139 GHVFHRKCVDLWLIKVSTCPICRDRV 160

[Close]

BLAST of CmoCh12G010080 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-10
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 106 DCPICLGGFRKGQWCRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLD 156
           +C ICLGGF +G+  + L  C H YH +C+D WL   S+CPLCR S+R+D
Sbjct: 106 ECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVD 155

[Close]

BLAST of CmoCh12G010080 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-09
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 34  IVLTTLFFVFLGLATALLLIYPCVASVLHRRRRRRHRRRSQF-----------TDSSSGF 93
           I+L ++  +F  +A  L+L +   A  L RR+ RR RRR              T SSS  
Sbjct: 28  IMLASVIILF--VAVILILCFHSYARWLFRRQNRRIRRRISAHLRSLAAARDPTQSSSSL 87

Query: 94  SNRD---LKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCIDSWL 153
           S  D   L+K+  F +S   +     +C +CL  F +    R L  CGH++H  CID+W 
Sbjct: 88  SPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWF 147

[Close]

BLAST of CmoCh12G010080 vs. ExPASy Swiss-Prot
Match: Q9LUZ9 (RING-H2 finger protein ATL63 OS=Arabidopsis thaliana OX=3702 GN=ATL63 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-09
Identity = 54/165 (32.73%), Postives = 72/165 (43.64%), Query Frame = 0


Query: 24  LSLLLKVSIMIVLTTLFFVFLGLATALLLIY-----------PCVASVLHRRRRRRHRRR 83
           L +L   +  ++L  L F+ L +   LLL +              A+  HRRRRRR+RRR
Sbjct: 19  LKILSSYNSNVLLAALVFLLLVVLFVLLLHFYARFFWSPSHQDFSAAARHRRRRRRNRRR 78

Query: 84  SQFT----------------DSSSGFSNRDLKKL---------LQFRFSNWVNPHSQIDC 143
           +  T                 S +  + RD K L         L     N      + +C
Sbjct: 79  TVTTTRIIPSLPLGGFDDGVSSPAATATRDDKGLDSSVISSIPLFVYEENEEEEDEEEEC 138

Query: 144 PICLGGFRKGQWCRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSV 153
            ICLG +  G + RKL  CGH +H +CID WL   S CPLCRS V
Sbjct: 139 VICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPV 183

[Close]

BLAST of CmoCh12G010080 vs. ExPASy TrEMBL
Match: A0A6J1FIL3 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111444262 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.5e-95
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MPLQDSTAALAGDPPPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVASV 60
           MPLQDSTAALAGDPPPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVASV
Sbjct: 1   MPLQDSTAALAGDPPPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVASV 60

Query: 61  LHRRRRRRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWC 120
           LHRRRRRRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWC
Sbjct: 61  LHRRRRRRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWC 120

Query: 121 RKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMDCANYRSYEILYAP 176
           RKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMDCANYRSYEILYAP
Sbjct: 121 RKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMDCANYRSYEILYAP 175

[Close]

BLAST of CmoCh12G010080 vs. ExPASy TrEMBL
Match: A0A6J1HSE6 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111465699 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.4e-92
Identity = 170/175 (97.14%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   MPLQDSTAALAGDPPPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVASV 60
           MPLQDSTAA AGDPPPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVASV
Sbjct: 1   MPLQDSTAANAGDPPPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVASV 60

Query: 61  LHRRRRRRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWC 120
           LHRRRRRRHR RSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWC
Sbjct: 61  LHRRRRRRHRHRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWC 120

Query: 121 RKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMDCANYRSYEILYAP 176
           RKLGGCGH+YHRKCIDSWLVRVSACPLCRS VRLDMEENQMDCAN RSYEILYAP
Sbjct: 121 RKLGGCGHVYHRKCIDSWLVRVSACPLCRSPVRLDMEENQMDCANSRSYEILYAP 175

[Close]

BLAST of CmoCh12G010080 vs. ExPASy TrEMBL
Match: A0A5D3CFV1 (RING-H2 finger protein ATL56 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00160 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.3e-71
Identity = 138/179 (77.09%), Postives = 158/179 (88.27%), Query Frame = 0


Query: 1   MPLQDSTAALAGD-----PPPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYP 60
           MP Q S AA++GD     PPPPKPE ++LSLLLK++IMI+LTTLFFVFLGLATALLLI+ 
Sbjct: 1   MPFQHS-AAVSGDPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHL 60

Query: 61  CVASVLHRRRRRRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFR 120
           CVAS LH RRRR H RRSQ++DSSSGFS+RDLKKLLQFRFSNWVNPHSQIDC ICL GFR
Sbjct: 61  CVASALH-RRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120

Query: 121 KGQWCRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMDCANYRSYEILYA 175
           KGQWCR+LGGCGH+YHRKCIDSWLVRVSACPLCR  VRLDMEE+++DC + R++E+ YA
Sbjct: 121 KGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYA 177

[Close]

BLAST of CmoCh12G010080 vs. ExPASy TrEMBL
Match: A0A1S3BTK8 (RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.3e-71
Identity = 138/179 (77.09%), Postives = 158/179 (88.27%), Query Frame = 0


Query: 1   MPLQDSTAALAGD-----PPPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYP 60
           MP Q S AA++GD     PPPPKPE ++LSLLLK++IMI+LTTLFFVFLGLATALLLI+ 
Sbjct: 1   MPFQHS-AAVSGDPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHL 60

Query: 61  CVASVLHRRRRRRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFR 120
           CVAS LH RRRR H RRSQ++DSSSGFS+RDLKKLLQFRFSNWVNPHSQIDC ICL GFR
Sbjct: 61  CVASALH-RRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120

Query: 121 KGQWCRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMDCANYRSYEILYA 175
           KGQWCR+LGGCGH+YHRKCIDSWLVRVSACPLCR  VRLDMEE+++DC + R++E+ YA
Sbjct: 121 KGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYA 177

[Close]

BLAST of CmoCh12G010080 vs. ExPASy TrEMBL
Match: A0A0A0LJ61 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 6.2e-70
Identity = 135/178 (75.84%), Postives = 153/178 (85.96%), Query Frame = 0


Query: 1   MPLQDSTAA----LAGDPPPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPC 60
           MP Q S A     L   PPPPKPE ++LSLLLK++IMI+LTTLFFVFLGLATALLLI+ C
Sbjct: 56  MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 115

Query: 61  VASVLHRRRRRRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRK 120
           VAS LH RRRR H R SQ++DSSSGFS+RDLKKLLQFRFSNWVNPHSQIDC ICL GFRK
Sbjct: 116 VASALH-RRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRK 175

Query: 121 GQWCRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMDCANYRSYEILYA 175
           GQWCR+LGGCGH+YHRKCIDSWLVRVSACPLCR  VRLDMEE+++DC + R++E+ YA
Sbjct: 176 GQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYA 232

[Close]

BLAST of CmoCh12G010080 vs. TAIR 10
Match: AT2G18670.1 (RING/U-box superfamily protein )

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-34
Identity = 74/147 (50.34%), Postives = 99/147 (67.35%), Query Frame = 0


Query: 15  PPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVASVLHRRRRRRHRRRSQ 74
           PPPKP+ ++LSL L   IM  +  LF V +G+A+ L+L  P + S LHR  RRR R R Q
Sbjct: 21  PPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLIL--PLLLSSLHRHHRRRRRNRRQ 80

Query: 75  FTDSSSGFSNRDLKKLLQFRFSN-WVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRK 134
             +SS G S+R +KKL QF+FS        + DC +C  GFR+GQWCR L GCGH++HRK
Sbjct: 81  --ESSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRK 140

Query: 135 CIDSWLVRVSACPLCRSSVRLDMEENQ 161
           C+D+WL++ S CP+CR+ VRL  E+ Q
Sbjct: 141 CVDTWLLKASTCPICRARVRLWEEDPQ 163

[Close]

BLAST of CmoCh12G010080 vs. TAIR 10
Match: AT4G30370.1 (RING/U-box superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 3.9e-24
Identity = 58/146 (39.73%), Postives = 82/146 (56.16%), Query Frame = 0


Query: 14  PPPPKPE-----AKVLS--LLLKVSIMIVLTTLFFVFLGLATALLLIYPCVASVLHRRRR 73
           PPPPK        K+LS  L+  + I + +T   F+   L       +       +R R 
Sbjct: 19  PPPPKANTKNLPTKILSNFLIGLIMIPVAITAFIFILTSLGFTFFFAFYWFLQRNYRHRL 78

Query: 74  RRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGC 133
           RRHRR     + S G S R +K+L QF++    + +   DC +C+ GFR+GQWCRKL  C
Sbjct: 79  RRHRRH----EYSDGLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDGFRQGQWCRKLPRC 138

Query: 134 GHIYHRKCIDSWLVRVSACPLCRSSV 153
           GH++HRKC+D WL++VS CP+CR  V
Sbjct: 139 GHVFHRKCVDLWLIKVSTCPICRDRV 160

[Close]

BLAST of CmoCh12G010080 vs. TAIR 10
Match: AT3G11110.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-11
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 106 DCPICLGGFRKGQWCRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLD 156
           +C ICLGGF +G+  + L  C H YH +C+D WL   S+CPLCR S+R+D
Sbjct: 106 ECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVD 155

[Close]

BLAST of CmoCh12G010080 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-10
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 34  IVLTTLFFVFLGLATALLLIYPCVASVLHRRRRRRHRRRSQF-----------TDSSSGF 93
           I+L ++  +F  +A  L+L +   A  L RR+ RR RRR              T SSS  
Sbjct: 28  IMLASVIILF--VAVILILCFHSYARWLFRRQNRRIRRRISAHLRSLAAARDPTQSSSSL 87

Query: 94  SNRD---LKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQWCRKLGGCGHIYHRKCIDSWL 153
           S  D   L+K+  F +S   +     +C +CL  F +    R L  CGH++H  CID+W 
Sbjct: 88  SPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWF 147

[Close]

BLAST of CmoCh12G010080 vs. TAIR 10
Match: AT5G58580.1 (TOXICOS EN LEVADURA 63 )

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-10
Identity = 54/165 (32.73%), Postives = 72/165 (43.64%), Query Frame = 0


Query: 24  LSLLLKVSIMIVLTTLFFVFLGLATALLLIY-----------PCVASVLHRRRRRRHRRR 83
           L +L   +  ++L  L F+ L +   LLL +              A+  HRRRRRR+RRR
Sbjct: 19  LKILSSYNSNVLLAALVFLLLVVLFVLLLHFYARFFWSPSHQDFSAAARHRRRRRRNRRR 78

Query: 84  SQFT----------------DSSSGFSNRDLKKL---------LQFRFSNWVNPHSQIDC 143
           +  T                 S +  + RD K L         L     N      + +C
Sbjct: 79  TVTTTRIIPSLPLGGFDDGVSSPAATATRDDKGLDSSVISSIPLFVYEENEEEEDEEEEC 138

Query: 144 PICLGGFRKGQWCRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSV 153
            ICLG +  G + RKL  CGH +H +CID WL   S CPLCRS V
Sbjct: 139 VICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPV 183

The following BLAST results are available for this feature:

BLAST of CmoCh12G010080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZV51	2.6e-33	50.34	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1	[more]
Q9M0C3	5.5e-23	39.73	RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1	[more]
Q9SRM0	1.4e-10	52.00	RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1	[more]
Q9LZJ6	3.5e-09	34.33	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
Q9LUZ9	3.5e-09	32.73	RING-H2 finger protein ATL63 OS=Arabidopsis thaliana OX=3702 GN=ATL63 PE=2 SV=1	[more]

BLAST of CmoCh12G010080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIL3	2.5e-95	100.00	RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111444262 ...	[more]
A0A6J1HSE6	3.4e-92	97.14	RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111465699 PE...	[more]
A0A5D3CFV1	4.3e-71	77.09	RING-H2 finger protein ATL56 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BTK8	4.3e-71	77.09	RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1	[more]
A0A0A0LJ61	6.2e-70	75.84	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 P...	[more]

BLAST of CmoCh12G010080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18670.1	1.9e-34	50.34	RING/U-box superfamily protein	[more]
AT4G30370.1	3.9e-24	39.73	RING/U-box superfamily protein	[more]
AT3G11110.1	1.0e-11	52.00	RING/U-box superfamily protein	[more]
AT3G62690.1	2.5e-10	34.33	AtL5	[more]
AT5G58580.1	2.5e-10	32.73	TOXICOS EN LEVADURA 63	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 107..148 e-value: 2.5E-6 score: 37.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 106..149 e-value: 6.5E-12 score: 45.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 107..149 score: 11.913911
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 82..159 e-value: 5.0E-19 score: 69.3
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 10..170
None	No IPR available	PANTHER	PTHR46539:SF9	RING-H2 FINGER PROTEIN ATL56	coord: 10..170
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 87..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G010080.1	CmoCh12G010080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane