CmoCh12G009800 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G009800
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionINO80 complex subunit C
LocationCmo_Chr12: 9145786 .. 9152900 (+)
RNA-Seq ExpressionCmoCh12G009800
SyntenyCmoCh12G009800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGCCGCTAATGGAGTCGAGCAATGCGTAGGGTTTATGCTTCTATAGAGCTTTGTTTTCTTTGAAATTTCTTCATAACCTTTGAATGTCGTAAAAGATTTCAGAAACCAGAAGGCGTTAATAGAAGTTGACGATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCGAAAGGCCAATCCAGAGGCAGGCACTGGAAGCATCTGAAGCAGATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTGTAAGATTTCTCTTTCAGTTTCAATCATTTTATTTGATTACATCTTTTTCTTGAGAAGGTGTTCGTCTGTAAATTGATTTGTTGTGAGATCCCACAACGGTTGGAGAGGAGAACGAAACACTTTATAAGAGTGTGGAAACCACTCACTAGAAACCACTCACTAGGAGATGCATTGTGGAAACCTTGAGGGGAAGCCTGAAAGGGAAAGCTCAAAGAGGACAATGTTTGCTAGGGGTGGGCTTGAGCCGTCGGGCGATGTGGCAACGAGGAGGCTAAGCCCCAAAGGGGTGGACACGAGGTGGTGTGCCAACAGGGACGTTGGGCCCCAAAGGGGGGTGGATTGGGGGTTCTACATCGATTGGAGAGGGGAACTAGTGTCAGCGAGGACGCTGGACCCCGAAGGAGGTGGATTGTAAGATCCCACATCGGTTGGGGAGGAGAACGTAACACTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACTCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTCGAGTCATCAGGCGATGTGCCAACGAGGAGACTAAGCCCCGAAGGGGTGGACACGAGGCGGTGTGCCAGTAAAGACGCTGGGTCCCAAAGGGGGTGGATTGGGGGTTCTACATCGATTGGAGAAGGGAACGAGTGTTAGTGAGGACGCTGGACCTCGAAGGGGGTGGATTGTGAAATCCCACATCGGTTGGGGAGGAGAACGAAACACCCTTTATAACGGTGTGGAAACCTCTTCCTAGCATACGCTTTTTAAAAACCTTGAGGGAAACCCCGAAGGGGAAAGCATAAAGAGAACAATATTTGCTAGTTGTGGGTTTGGGCTGTTACATTTTTGTTGTTGCTTTGATGCGTGGACTGAGATGTTTTTGTTTGATAATTATTTAATAGGTTAGATGTATGAATTAGTTCTTGATGTTGGAGTGTTTTTTAAATTTAGTTTATGTTCTTTAAAGCTTTCAATTTAGAATGGTAATATTGGTTGATTATAAACTCATATGGACGTTAGAATTGGTAGAGAGTTGAGAGGAGAAAAACAAGGTCATCTAAGACGAGCAATATCAAAGTTCTACCAATTCTTAGAAGTTTGAAGTGAATTTGAAGCTTTCGTCATCTTTTATCTCCAAAGGTTGCTAGACTGCTCAGTCGACTTGGACCTTTTATGGAGGCTTTTGAAGTGTCTTTTTGGAAATGTTGCTTGTGAAATCCTACATCGGTTGGGGAGGAGAATGAAACATCGTTTATAAGGGTGTGAAAACCTCTCCCTAGCATATGCGTTTTAAAAACTTTGAGGGGAAGTCCGAAAGGAAAAGCCCAAAAAGGATAATATTTGCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAAAGTCAGATACCGGGCGATGTGCCAGCGAGGAGACTGAGCCTCAAAGGGGGTGGATACAAGGCGGTGTGCTAGCGAGGAAGCTAAGTCCCAAAGGGGGTGGATTGGGGGGTCCCACATCGATTGGAGAAGGGAATGAGTGTCAGCGAGGACGCTGGGTCCCAAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGGAAGGAGAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACACATTTTAAATATTTGAGAGGAAGCCCGAAAGAGAGCCTAAAGAGGACAATATATGCTAGCAATGGGCTTGGACCGTTACAAATGGTATTAGAGCCAGACACCGGGCGATGTGTCAGCGAGGAGGTTAAGCCCCGAAGGGGGTCGGACATGAGGCGGTATGCTAGTGAGGAAGCTGAGTCCCGAAAGGGGGTGGACATGAGACGGTGTGCCAGCAAGGACGCTGGTCGTCGAAGGGGGGTGGATTAGGGGGTCCCACATCGATTAGAGAAGGGAACGAGTGCCAGCAAGGACGCTGGGCCCCAAATGAGGGTTGATTGTGAGATCTCACATCGGTTGGGAAGGAGAACAAAACATCTTTTAAAAAGGTGTGAAAACCTCTCCCTATCAGACATGTTTTAAAAACCTTGAGGGAAAGCCCGAAAAGGAAAGTCCAAAGAGGACAATATCTATTAGCGGAGGGCTTGAGCTGACTACTAAGTCGATTTGGACCTTTTTTGGAAGCCTTTGAAGTGTCTTCGGTTTGGAATAGGGATTGTTGTTTCCTCCTATTAGTGGGAAAGGCAACATTCTATGGAAGACTTGTTTCTTCCCTCCCATTATTTGGAGGATTTGGATGGGGAGGAACCATAGAATTTTCTGAGAGGCGAGAGATCTGTGGGGGAGTTATGGGAGATTATTAAGTTTAACGCCTCCATATTGATCTCGGTGACTATGGTCGTTCTGTAATGGTCGGTTTAGCTTTATTCTTTTGAATTGAAGTTCATTTTTTAGCTTATGGTGCTTCCTTTGTTTGGCTGTTTTTTCAATCCATGTTCCTGTATATTCATTCATATTTTTGGATAAAAAGGTAAGAACAAGATCTTTGTGGTTCATTAATGCTTGGGAAGCGAACAACGGGACAAATTGAAGGGCATCACAAGAAATGCATAGTGGCTTTTGTGGTTGTGAAAGCTGTTTTTGGTAAACTTACCTGGTCCAATTATTAATGAAAGCTCCTTTAAGCATCTCCCTTGACAAGTTGTCGTGCTCTTTGACAACATCGTTTCTTCTTGATGGCCAAGAATCGCCCACACACGCTCCCCTGAAGGGAGAGTTGGAAACATAATGAACACTCTCCAGCCAATTACGAAACCACCGTTCCTTAGCGTAGCTGGGCCATCCTGGACTTGTACTAGAGACATCGCCCATGACTGCAATTTTAGAGAGACACAAAAACGAAGAAATTCAAACCCTTCTCATTGGATGATCATGATACTTCCCAAAAATCAAAATTCTTGATCAATGTAGGAACAATATCACCACTTTTGTTCAATAAAATACCAAAGTGGATTGAACCTCGAGGTTTCCTTTGTAACTCCTGGAACTTCTTCGTAGTGGCTCCGAAAGAAATTGAAGAATTTCTCGGGAATTCTATGCATTTTCATATCTCACAGCTTCGCAAAGAGGATTCTCAGTTACATAAAGGGGATAGAGTTGATCATGGATTGTTTACCGAGGTAGAGCTTTGCTATGAAGTATCGCTATCCACCACAGTTAGCTTCTTCGAATTAAAAAATTGATGGGTTTTGAGATAGCCATCTGTTGGGATTCTCATCTAAAATTGTAACCGCACAAGCCGACCACCAGCAGATGTTGTCTTCTTTGGGCTTTCCCTCAAGGTTTTTAAAACGCGTTTGCTAGGGAGAGGTTTCCACACCTTATAAAGAATGCTTCATTCTCCTCCCCAACTAACGTGGGATCTCACAAAAATAATTGGCATCTCTACTTTATCGAAATTACTCCAATCTAGATGCTCATTATTTTTTTCTTCACTGCGATTCTCTCCTTTCTGTATTCTCGAGGTCTCCCGTGGTTCATGTACTCTCCCTTTTGTGTGCTTCTCCTCTTCTACCAACTGTTTCTCCTACCCTAAGTACGCCATTGATTTCTGTTTTATTATGGGTTATTTTGAGAGTATTATAGCTTTAGTTTACTGGCTGTCGTGCTATGTGGGTTAGTACCGTCACCTCAACACGTTTTCTGCGAGGTGTTCCATCACTTTTTTTATTTGTAGGCGTCTTTGCAATTCCTCATTCATTTCTTGCATTTTCTTCTCCATGGTCTCCATTCTTTCCTCCCATTTTCTTTGAGCCATTTGATCTCCTACTCGGATAGAAATGTGTGTGTACACCAAATTTTTAGGAACTAACTATGTTACGTCTGTGCGCCCAACGGTGCAATAGAGCACCATACTTGAATAATCCTTCCAAATTCAGGAAGGCTAGCTACTCTCATACCTAAACATTTTGTAAAACCATAAACTGTCTTGCTTCATGCTCATGACATTTATGGCTACATATACATACATGTACTGTGTTAATGGCTACATATACATATACATACCTCGAGGGAGGCAGCTTGCTGTTGATCAATAGGATTCCAGTCAAGATCATGTGGAAATTTGCAGAGGGCATTGTCCTTTGTGTATAAGGACGTATAAAAGGACACAAATTTTGATACAATTTCTTCTTCGTTTACTAAACAACTTCTGCCTTGTGTGGATAAAATTTCCATGATGGTACTCTTTCGTTTCTTTGTAGCCATGATACAATGGAAAAATTTGGAGTTTATGTCACCTTCCTCTAACCATCGTTTTTTACATTTTTGTCTCCAAGATTGCTCTTCCTTTTCTGCCAACGAAATAAGTTCTGCTTTCATGAGCTTTTTTCCGTGTGTTGAACTAGTGTGATGGAGCTAGTTTCCTCCCGGAGGCGCCAACCCAGTAAGAGAGAGCAATAAATGAGCTGTGTTTGGGTCTCTTCACGAGTATTGATGTTTTCATTGGCAATAACACATTAAAAAACTAAGTAGTCTTGGAATTTTATACTTTTATACCCCTTATTGAAAGTTTTGAGTTCGATACTTCTTGAGTATTAATTGTTCCTTTCATTCGTTTTTCAGATGTTAATATCGAGTCACCTCCGTCGATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGGTATGTGACTTTTGTTTGTTTATGACTCAACATTGCTTTCTAAACTCGAACAACAATTAATTTCTTTGTTTTCTTAAAAAAAAAAAAAAAACCCTTTTTGAAATCACTTCAGGAAGTGACGTTGTTATTATTCAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTATGTTCAGAGGTATTTGGCCATGAGAAATGCAGCTGTTGTTTTAAGGTAATTTCTGAAGTTTCTTTCTATAAGATCACTTCATCTTTGATCATTACCATTGACAACGTCTTTGAACATGAAATTTAGATGATGCCACATGCCCTGGTAGCTAGTTGAACACATTAAATTTCATTCAGTTTTGAGTAATCTTTTCCTAAATTACTTGAAAGTTGCCGTTTGTGTATATAAGGGATTCCTAGATTTAAGCTGAAAAAACAATCACTTATTGACTGCCATCTTCTTTCATCTATGCGGATCCCAAAGAGGCAGATTCCATTTTTTTCATCAGGTCTAGCTAAAGATTTGAGGTATTAAGAATTCAATGGTGAAGTCACGAGGTAGACACTATATGTGAGATCCCACGTTGGTTGGGGATGAAAATGAAACATTTTTTATAAGGGTTTGGAAGCCTCTCCCTATCAGACACGTTTTAAAAAACTTTGAAGGGAAGCTCGAAAGGGAAAGCCCAAAGAGGACAATATTTGCTAGTCGTGGGCTTGAGCCGTTACAAATGGTATCAGAGCCAGACATCAGGCAATGTGCAAGCGAGGAGGCTGAGCCCCAAAGGGGGGGTGGACATGAGACGGTGTGCCAGCAAGGACACTGTGCTCTGATGGGGGGTGGATGGGGGGTCCCACATCTGACTGGAGAATGGAACGAGTGCCAGCGAGGATGCTGGGCCCCGGAAGGGGGTGGGTTGTGAGATCTCACATTGGTTGGGAAGGAGAACGAAATATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAATGCGTTTTAAAAACCTTGCTCGAAAAGGAAAGCCCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGTGCCGTTACAAATAGTATCAGAGATAGACATCAGACAATGTGTTAGCGAGGAGGCTGAGCTCTGAAGGCGGGTGGACACGAGGCGGTGTGCTAGCAAGGACGTTGGGTCCCAAAGGGGGTGGATTGTGGGGTCCCACATCGATTGGAAAAGGGAACGAGTGCCAGCGAGGACGCTGAGCCCCGAAGGGAGGTGAATTTTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGAAAATCTCTCCCTAGCAAATGTGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGAAAGCCTGGAGAAGACAATATTTGCTAGCGGTGGACTCGGACCATTACACTATTCAACTAGTGCAAGTTATTTGGAAAAGTAACTCTAAGGAATCGATATGAATATTGGTCTCAAAACCCCACGCAGTTCTATAGTTGATGTGTTTGATATTCAACCAATAATCTAAGCTAAGCTGTTTCTTTAGTTTGTTTCATAAGTAGAAATCATATCACGTCGAGCCCTAAAAAGCATCAAATTATTTAGTGCTATGAATGGTTCTGAAATTCTGAGTTTTCATTAGAATAACTTCCTGCTTAACTGCTTCTTGGAGTTTTATCTCACAAGTTCTATATTTGGCTGAGTTCTTCAATCTGATGCATCTAACTCTTACAGATGAAGAGATACTACTTTTCTATTGCCGATTAGCTCGGCGTCGAACGAGACCTCCATCTCGTGGCAGAAAATGCAGTGTGAATACTTAAAATGCATCATTTGTGTATTGATTCAATCATTTTGTGTATTAAATGGTCTTGGAATGCATTTTATGTTTGCCTTTGGAACTATTAGCCAAAGTTGATTCATTTGGTTAAAACTCTCCAAGCTGAAAACATCCCCTAATGGGATTGCAGTTGAAGAAAATTTAAGGCCTAAAACTCGGTTCTATACCTCGAATCTTGAATGATTTCTATGACTTCTATGTACCGTCCGTATCAGTAACTAAATAATGATGTCACGTTTATTGTACA

mRNA sequence

CGGCCGCTAATGGAGTCGAGCAATGCGTAGGGTTTATGCTTCTATAGAGCTTTGTTTTCTTTGAAATTTCTTCATAACCTTTGAATGTCGTAAAAGATTTCAGAAACCAGAAGGCGTTAATAGAAGTTGACGATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCGAAAGGCCAATCCAGAGGCAGGCACTGGAAGCATCTGAAGCAGATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTATGTTAATATCGAGTCACCTCCGTCGATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTATGTTCAGAGGTATTTGGCCATGAGAAATGCAGCTGTTGTTTTAAGATGAAGAGATACTACTTTTCTATTGCCGATTAGCTCGGCGTCGAACGAGACCTCCATCTCGTGGCAGAAAATGCAGTGTGAATACTTAAAATGCATCATTTGTGTATTGATTCAATCATTTTGTGTATTAAATGGTCTTGGAATGCATTTTATGTTTGCCTTTGGAACTATTAGCCAAAGTTGATTCATTTGGTTAAAACTCTCCAAGCTGAAAACATCCCCTAATGGGATTGCAGTTGAAGAAAATTTAAGGCCTAAAACTCGGTTCTATACCTCGAATCTTGAATGATTTCTATGACTTCTATGTACCGTCCGTATCAGTAACTAAATAATGATGTCACGTTTATTGTACA

Coding sequence (CDS)

ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCGAAAGGCCAATCCAGAGGCAGGCACTGGAAGCATCTGAAGCAGATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTATGTTAATATCGAGTCACCTCCGTCGATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTATGTTCAGAGGTATTTGGCCATGAGAAATGCAGCTGTTGTTTTAAGATGA

Protein sequence

MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
Homology
[Close]
BLAST of CmoCh12G009800 vs. ExPASy Swiss-Prot
Match: Q8BHA0 (INO80 complex subunit C OS=Mus musculus OX=10090 GN=Ino80c PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-15
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 0 

Query: 33  RGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLR 92
           + R WK+LKQIL AE    +  ++PNY +I++PPS  P KK  DI+G  A Y DP++ LR
Sbjct: 100 KNRTWKNLKQILAAERALPWQLNDPNYFSIDAPPSFKPAKKYSDISGLLANYTDPQSKLR 159

Query: 93  YANADIFKVIRSLPNEYVQRYLAMRNAAVVL 124
           ++  + F  IR LP++ V  YLA+R A  ++
Sbjct: 160 FSTVEEFSYIRRLPSDVVTGYLALRKATSIV 190

[Close]
BLAST of CmoCh12G009800 vs. ExPASy Swiss-Prot
Match: Q6PI98 (INO80 complex subunit C OS=Homo sapiens OX=9606 GN=INO80C PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.7e-15
Identity = 38/91 (41.76%), Postives = 59/91 (64.84%), Query Frame = 0 

Query: 33  RGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLR 92
           + R WK+LKQIL +E    +  ++PNY +I++PPS  P KK  D++G  A Y DP++ LR
Sbjct: 101 KNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLR 160

Query: 93  YANADIFKVIRSLPNEYVQRYLAMRNAAVVL 124
           ++  + F  IR LP++ V  YLA+R A  ++
Sbjct: 161 FSTIEEFSYIRRLPSDVVTGYLALRKATSIV 191

[Close]
BLAST of CmoCh12G009800 vs. ExPASy Swiss-Prot
Match: Q5BJY3 (INO80 complex subunit C OS=Rattus norvegicus OX=10116 GN=Ino80c PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.7e-15
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 33  RGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLR 92
           + R WK+LKQIL AE    +  ++PNY +I++PPS  P KK  D++G  A Y DP++ LR
Sbjct: 100 KNRTWKNLKQILAAERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLR 159

Query: 93  YANADIFKVIRSLPNEYVQRYLAMRNAAVVL 124
           ++  + F  IR LP++ V  YL +R A  ++
Sbjct: 160 FSTVEEFSYIRRLPSDVVTGYLTLRKATSIV 190

[Close]
BLAST of CmoCh12G009800 vs. ExPASy Swiss-Prot
Match: Q9UTE8 (Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ies6 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.8e-13
Identity = 41/97 (42.27%), Postives = 64/97 (65.98%), Query Frame = 0 

Query: 28  PKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDP 87
           P  +++ R  ++L+QI+Q +   N  S + +Y +IE+PPS+ P  K CD+TG  A Y DP
Sbjct: 22  PNYKAQPRRNRNLRQIIQNDPVQNEPS-KFSYSSIEAPPSVLPQPKYCDVTGLLAIYTDP 81

Query: 88  RTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR 125
           +T LRY N +I+ +IR LP+   Q YL +R++ VVL+
Sbjct: 82  KTRLRYHNKEIYGLIRELPSGADQEYLKLRSSDVVLK 117

[Close]
BLAST of CmoCh12G009800 vs. ExPASy Swiss-Prot
Match: P32617 (Chromatin-remodeling complex subunit IES6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IES6 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-08
Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 0 

Query: 59  YVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMR 118
           Y ++E+PPS+ P KK CD+TG +  Y  P   +RY NA+I++ +++ +     Q YL +R
Sbjct: 100 YFSVEAPPSIRPAKKYCDVTGLKGFYKSPTNNIRYHNAEIYQLIVKPMAPGVDQEYLKLR 159

Query: 119 NAAVVLR 125
            A  VL+
Sbjct: 160 GANFVLK 166

[Close]
BLAST of CmoCh12G009800 vs. ExPASy TrEMBL
Match: A0A6J1HLV4 (INO80 complex subunit C isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465726 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.0e-66
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV
Sbjct: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60

Query: 61  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA
Sbjct: 61  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120

Query: 121 VVLR 125
           VVLR
Sbjct: 121 VVLR 124

[Close]
BLAST of CmoCh12G009800 vs. ExPASy TrEMBL
Match: A0A6J1FBP9 (INO80 complex subunit C isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444164 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.0e-66
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV
Sbjct: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60

Query: 61  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA
Sbjct: 61  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120

Query: 121 VVLR 125
           VVLR
Sbjct: 121 VVLR 124

[Close]
BLAST of CmoCh12G009800 vs. ExPASy TrEMBL
Match: A0A6J1CRZ9 (INO80 complex subunit C isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014214 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 7.3e-65
Identity = 120/124 (96.77%), Postives = 123/124 (99.19%), Query Frame = 0 

Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+S DEPNYV
Sbjct: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYV 60

Query: 61  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANAD+FKVIRSLPNEYVQRYLAMRNAA
Sbjct: 61  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFKVIRSLPNEYVQRYLAMRNAA 120

Query: 121 VVLR 125
           V+LR
Sbjct: 121 VILR 124

[Close]
BLAST of CmoCh12G009800 vs. ExPASy TrEMBL
Match: A0A1S3B479 (INO80 complex subunit C isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485837 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.1e-64
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYS DEPNYV
Sbjct: 1   MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYV 60

Query: 61  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120

Query: 121 VVLR 125
           VVLR
Sbjct: 121 VVLR 124

[Close]
BLAST of CmoCh12G009800 vs. ExPASy TrEMBL
Match: A0A0A0LJN6 (YL1_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G077540 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.1e-63
Identity = 120/124 (96.77%), Postives = 121/124 (97.58%), Query Frame = 0 

Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYS DEPNYV
Sbjct: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60

Query: 61  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120

Query: 121 VVLR 125
           VVLR
Sbjct: 121 VVLR 124

[Close]
BLAST of CmoCh12G009800 vs. TAIR 10
Match: AT4G38495.1 (CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). )

HSP 1 Score: 171.0 bits (432), Expect = 5.9e-43
Identity = 79/124 (63.71%), Postives = 100/124 (80.65%), Query Frame = 0 

Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           ME E++EA++V+ + L+FK+ Q YEKYPK QS  R WKHLKQILQAEN+ +   D P YV
Sbjct: 1   MERELMEADIVVASRLSFKKKQAYEKYPKAQSSSRRWKHLKQILQAENFPDLPPDLPTYV 60

Query: 61  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPS  PCK++CDITGYEAPY DPRT LRYANA +F+ +RSL ++ V +YL++RNAA
Sbjct: 61  NIESPPSTQPCKRLCDITGYEAPYVDPRTNLRYANAHVFQTVRSLSSDQVHQYLSIRNAA 120

Query: 121 VVLR 125
           VVL+
Sbjct: 121 VVLK 124

The following BLAST results are available for this feature:
BLAST of CmoCh12G009800 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8BHA02.3e-1543.96INO80 complex subunit C OS=Mus musculus OX=10090 GN=Ino80c PE=1 SV=1[more]
Q6PI988.7e-1541.76INO80 complex subunit C OS=Homo sapiens OX=9606 GN=INO80C PE=1 SV=1[more]
Q5BJY38.7e-1541.76INO80 complex subunit C OS=Rattus norvegicus OX=10116 GN=Ino80c PE=2 SV=1[more]
Q9UTE84.8e-1342.27Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 9... [more]
P326174.6e-0838.81Chromatin-remodeling complex subunit IES6 OS=Saccharomyces cerevisiae (strain AT... [more]
BLAST of CmoCh12G009800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HLV43.0e-66100.00INO80 complex subunit C isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465726 P... [more]
A0A6J1FBP93.0e-66100.00INO80 complex subunit C isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444164... [more]
A0A6J1CRZ97.3e-6596.77INO80 complex subunit C isoform X1 OS=Momordica charantia OX=3673 GN=LOC11101421... [more]
A0A1S3B4798.1e-6496.77INO80 complex subunit C isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485837 PE=4 ... [more]
A0A0A0LJN61.1e-6396.77YL1_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G077540 PE=4 ... [more]
BLAST of CmoCh12G009800 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G38495.15.9e-4363.71CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 27... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013272Vps72/YL1, C-terminalSMARTSM00993YL1_C_2coord: 73..102
e-value: 6.3E-13
score: 58.9
IPR013272Vps72/YL1, C-terminalPFAMPF08265YL1_Ccoord: 74..102
e-value: 3.0E-14
score: 52.5
IPR029525INO80 complex, subunit Ies6PANTHERPTHR31200INO80 COMPLEX SUBUNIT Ccoord: 3..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G009800.1CmoCh12G009800.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006338 chromatin remodeling
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0031011 Ino80 complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity