CmoCh12G009580 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G009580
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	GDT1 family protein
Location	Cmo_Chr12: 8952989 .. 8959274 (+)
RNA-Seq Expression	CmoCh12G009580
Synteny	CmoCh12G009580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATAAAATAAAAAGCTTCCTGGTTTTGTTGGCTATGGTGGAGCTCTAGCTTGTAAGAAAGATATCCTTCTTGGTCTACAATTGGCAGCAATCCAATGCCGATCTGTTCTTATTTTCAATCGAGGGAGATTCCACCATCTTAACATCATTCTCCGATTTCGATTCCCAGAATCACAAATTCCATCTACTACTTATCCGTTCTTCTTCAATGGGTTTGCGTTCAAATCCTATTCGGAAGCTCTCTTTCTCTCCTTTTCTCCTCCTTCTTCTTCTGGTTTCTGTGTTTGCCTCCGTTCAGGTATTAATCTGGCATTTCTCTACCTTTTTTCTGTGTCTATGGAGTTCTTATGGGTTTGATTTTGTAATGTGTTGGGGTTTTTTAGGGTTTTTCTGCGGAAGTTGAGAAAGTGGAGTTGGATGGACCTAGAGATCTCGGTCGACGGAGTAAGGTGAGTGCGATTCGTTATCTTTCTTGTTTTTGCTTTGGATGAAGATATTTTATGATGCATGTGAAATTTTTGGTGAGGACTCCGGTGCTGTGGTGGTGGCCATGGTGGGAGTGTCGAGGATTGTTGAGGATTGTCGAGGATTGTTGGGAGGGAGTCTCACATTGTAATTTAGAGAATGATCATGGGTTTGTAAGTAAGGAATATATCTCTATTGGTATGAGGCATCTTGGGGAAGCCCGAAAACAAAACCATGAGAGCTTATGCTCAAAGTGGACAATATCATATCATTGTGGAGATCCGGATTCCTATCATGGTATCAGAGTCATACCCTTAACTTAGCTATGTCAATAGAATCCTCAAATGTCGAACATAGAAGTTGGAACCCTCGAAAGTGTAGTCAAAAGTGACTCAAGTGTCGAACAAAGGGTTTACTTTGTTTGAGGGCTCCAGAGAAAGGAGTCGAGCCTCAATTAAGGGGAGGCTGCTCGAGAGCTCCATAGGCTTCAGGAGAGGCTCTATGGTGTACTTTGTTCGAGGGGAGGATTGTTAAGGATTGTTGGGAGGGAGTCCCACATTGTAATTTAGGGAATGATCACGGGTTTATTAGTAAGGAATACGTTTCTATTGGTATGAGGCCTTTTGGGGAAGCCCAAAAACAAAACCACGAGAGTTTATGCTCAAAGTGGACAATATCATATCATTGTGGAGATCCACATTCCTAACTAGGAGGAGGGGGGGCTTATGGGTTCATTGTACATTGTAATGGAACTAACTATTGGGGATTTTAATTGTTGAGAGTTCAGAACTTTTTGCTACCTGTTCGTGTATGAAAAGGGGAAACGATGAAATTCCAGGTGGCTGTGTGGAAGATGGGTTGATATATTATGTACCCTCTAGCTAATACCATTGGAACTGGCATGTATTGATTCAATTGGTGTCGCTGGTTTTGTTTTGGAGACTTGAAGAAGGTCACCTGACTTTGGGTTTATGATATTTTAGGAGCCTATAGGAAGAGTTTTCAGAATGTAGGTTTTAATTTAAAGGCTGTTTGAAATTTTTTTCATAAGGTCCGATGTCAGTTGGAGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAATAGACACGTTTTAAAATCATAGGGCTGACAACGATATGTAACGGGCCAAAACGGACAATATCTGCTAGTGGTGGGTTTGGGCTGTTAAAATGGTATCAGAGCTAGAAATCAAACGGTGTGCCAGCGAGGACACTGGTCCCCAAGTGGGGTGGATTGTGAGATACCACATCGGTTGGAGAGGGGAACGTAGCATTCCTTATAAAGATGTGGAAACCTCTCCCTGGCCAACATGTAATGGAGAAACTCAGGAAGGAAGGCCCAAAAACCTTGAGGAGAAGTTCGAAAGGAAAAGCCCAAAGAGGATAGTATCTAGATGAGTACCAGTTTTGCTGCATAACTCTGAAAAACGCGTTTTAAAACCTTGAGGAGAAGTCCGAAAGGGAAAGCCCAAAGAGGACAATATTTGATAGTGGTGAGTTTGGGCCTAGGTTTGGGTTGTTACATTTTTTTTAGCTATGTTAAGAACTTGAAACTTTAATATGCTTTAATAAGTTAATTCTTAAAACGCATTTATTAGTTCAATATGAAGTAGTAAGGTTTGACAGAACTACTAAGAAAACATCTGAAATTCTTTTTTCTGCTATTCTTTGTTTTAAAAAGCTATATAACAGGCATGTTTTCTGATCCAGAAATTAGGGTACTTTAGTAGTAACTAGTTATTTGCTCATTTTTTGTTTTAGCTGTTCTTTTGAGTAATGATTTTCTTGCCTTGTTTGGAGCATCTTGTGGAACTCTTTTCTTTTCTTCTTTAAATTCTAGTTTCAGTTCTTTCATGACGTTATACTCGTCTGTATTTCCTCATTAGATTTCCTTGAGCAATGCCGATACGGTTGCTGCAAATAAGGATGGTGTGGACTCAAAAGATCTTGCAAATAAGGATGGTGTGGACTCAAAAGATCTTAATCTTGACCTGGACTCCATTGGCCTTGGAGTCTTCGACGCGTTCTTTGCAAGTTTGTCCATGATAATTGTCAGTGAGGTTGGTGTAATTGATTCTAGAGTTATCAACATGAACTGAAAAGACTCGAGATGGGAAATGAATGTTTTGAACCTAACTTCTTGCCTGTTCAAGTTCAATTATTTTAACTTTTCTGGAATGATTGTGTGTAGATTGGAGACGAGACGTTTATAATAGCTGCACTTATGGCTATGCGCCACCCCAAGTCCATTGTTTTATCTGGTGCGCTCACTGCTCTGATTGTAATGACAGTAAGTCGAATAGATTCTTCATTTTCATAGTATGATTCTGTATGTGTTATTTGAACTCATTACAACTGCACGTCACGTTTCTTTCTCCGGTGAATAAGAGTAGAACTGTTTCCATGCCCATTAGGTACTATCAACTGGTTTAGGTAGGATCGTGCCAAATTTGATATCGAGGAAACATACCAACAATGCTGCTACAGGTACGTGCATAGTATTTTACACTTTTGTTTCTTACTATTTGTAGGTTTTAACGTTTCAAGTGTCCATAGTGTAGAGCTTGGAATAACGATTCCAACACCTATTGAATCACTCAGATTGAAGCTAAAATGAAGAAGTTATGACTGAAACAAATTAACCTTTGGAAGAGTAATAGGAGTTTTGGTTGTTTTTAAAATAAAAGAAAAGAAAACTATTTTTGTATATATATGTGTGTGTGTATTATAATTGGAATATTTAAAAAATAATAATGTTGCAGGTGGCTTATTACCATTTTATGGTAATTAAACAATAATAATAATAATAAAAGAAATTTAAACTTATGATTGTTCGTCATTATAGATGTTATTATTATTTAAAAAAATGAAAGAATTTTCAAGTACTGCTATATCTCTGCAGTTCTGTATGCATTTTTTGGATTGCGGTTACTTTACATTGCTTGGAGATTCAAATCGGATTCAAAATCTTCCACGAAAAAGGAAATGGAAGAAGTATGATATCTTCCACACCTTTTGCAGTTTGATGGTTGTTTTCCCTTTATTTTGTTTGGATTTTTGTCTGCACTTTTATTTCTGATTCTTGAAGTTTTTTTTTGGTGTTTCTATTGAACTTTGTGTAAAATATTTGGTGATTCATGATCTATGGCATGAAGATGATATGAGTATAGAGATATACTCCTTGTATCATATCTCTATACCAGGAAGAGTATAGAGCTATACTTCTTGTATCATATCTCTTTACCCATGAAGAGTATGGAGAACCTACTAAAGTGGACTATTATAATTGTTCTATCATATCAGATATTCATGTAAGAGCCTAAGCCCACTGCTAGTAGATATTGTCTGCCTTTGCCTGTTACATATTGTCGTCCGCTTCACGATTTTTAAAATGCGACTACCATGGAGAGGTTTCCACACCCTTATAAGGAATACTTTGTTTCCCACTCCAACTGATGTGAGATTTGACAATCCACCCCCTTGGATGCCCAGCTAGTCTGGCTTTGATACCATTTGTAACAGCTCAAGTCCACTACTAGTAGATATGTCCACTTTGGCCTGTTAGTATTGCCGTCAACCTTACGGTTTTTAAAACATGTCTACTAGAGAGAGGTTTCTACACCCTTACAAAGAATGCTTTGTTCCCCTCTCCAACCGATGTGGGATCTCACAATCCACCTCCTTGGAGGCCCAGTGTGTCTAGCTCTGATACCCCTAAGCCCACCGCTAGCAGATATTGTCCGCTTTAGCCTGTTACATATTGCCGTCCGCCTCACGGTTTTTAAAACGTATATACTAAAGAGAAATTTTCACACTCTTATATGTAATTCTTTGTTCCCCTCTCCAACCGACGTGGGATCTCGCAACTCATAAGAGTATTTCATGTTTCATAGTGTTAGTTGCTATCTGCCATTTTGATATTTGGATTTGTAAATTTTTATTCTCTGAACCGTACCGAATCTTGTTGCCTGTCTTTTACGCCTTGCATGAGTAAATATATCGATAATTCGTCTGTTCTAATCTTGTTGTCTCTGAAGAAAGCATGTGGCCATTTTAGCTACACATGGGATTTCTCTACAGGATTGTGAATTCATACCATTCAATTGATTATAATCTTTATTCAGGCTCCTTGATCCTAGCATTCTCTTGTTCTCGAAATTGATTTCTAATCACGTGTTCAGGTAGAGGAGAAGCTTGAAGCTGGACAATCCAAGACGTCCTTCCGCCGCTTCTTTCTGCGATTTTGCACTCCCATATTCTTGGAGGTCCACAAACTGCTTACTATTATCACTGATTGAGATGCATGTTACATTTCATATTTGTAATTCCTTAGCTTATTTTGGCGATCATTTTGGCTTTGCAGTCGTTTATTTTGACGTTTCTTGCCGAGTGGGGAGATCGAAGTCAGATAGCAACAATCGCTGTAAGTTATTCCATTTTAATTGTATGTTTTGTTTGTTTGGCATCATCAAGTTGGTCCTGGTTAGTTTCCAATTTTCCAGTTCTTACTCCCATGGAAGTTGGATTGATCCATGGTTTCCAATAGCTTTTGAAACTCAAAATCTGAGGCCTTGTTTGATAACCATTTTAGTGTTTATAAGTTTTTGAAACTCGATTTGAACTTTGATGGGTAAAAATAGTGTGTGTTTATAAGCTTGGTTTTTGTTCAAATGGTTATCAAACGGAGTGTAACCATTACATGTGGACTCTGAATACTCGTCCATGATCTTTACACGTGCTTTTCTTAGGTTCACGTTAAACAATTTTGCCTAAAAAACTAATAGCTACCAGACTAGATTCAGAATGTTTACAAGTATAGAGATGAAGATGGAGGATTTGGAAGAAAGAACTTCCTTGATTTTGAATAATAGTCAAGATGTCGGGGAGCGCATTAGATATTTACCTAAACTGGTTTTTTTCGGCACTCGGTTCCCCTCTCCTTTGGCAAGAAGATATTCCTTCAGAACCCTCTCCTTGCATCATCAAGTCGACGTTCAGTTTACTTTTTCGATTAGGAACTCTTAGTCAAGCTGATGGCGAGATCAATTCTGTGTTCGGGGGGAAAGAGAAAAGGAGAGGAACCACTACCTAATAGTGCTTTTACGAAAGAGCTTAACTTAGAGGACCTTTTTCTAGATGTTGAAGAGGTGAGTAAGAGGCTAATATCTTCTCGACACTATCGAACCTGAAATCCACTCTATTGCAGCTAGCAACACACAAAAATGCTCTTGGAGTGGCTGTGGGAGCCATATTGGGGCATTCAATTTGTACATCAATGGCTGTGATTGGTGGAAGCTTGTTGGCATCAAAGATATCTCAAGGCACTGTTGCGACTGTTGGAGGCTTGCTCTTCCTTGGCTTCTCCTTCTCTTCCTATTTCTTCCCCCCTCTATAAGTCTCTTTTATAGTAACTCTTTCCAACTTTTTTTTTTCTTTTCTTTTTTACTAGTTTGGGTAAGTCGGATGTTTTGGCCTTTTCGTGTATCGATTTAGCTTACGGAATATGTATACATACTGATATTAACGCTATAGTTTCAAAAGGAAATTCATGTCTAGTCTTTTTGTGCTCGAGGTCGAAGAACATTAGTACTTAGATGTTTGGGGTGCGGGTGGGGGAGAGAGGGTGACGACCCTGTTGAATTGGTTTCTCTCCTTCGATATCTTGGGGAAGTATGCTATTTTGGCCTTTTCGTGTATTGATCTAGCATATGGTATACATGTACGTACAAATATTAACTCTATAGTTCAAAAGGAAATTTATGTATAGTCTTTTTGTGCTCGAGGTCG

mRNA sequence

CAATAAAATAAAAAGCTTCCTGGTTTTGTTGGCTATGGTGGAGCTCTAGCTTGTAAGAAAGATATCCTTCTTGGTCTACAATTGGCAGCAATCCAATGCCGATCTGTTCTTATTTTCAATCGAGGGAGATTCCACCATCTTAACATCATTCTCCGATTTCGATTCCCAGAATCACAAATTCCATCTACTACTTATCCGTTCTTCTTCAATGGGTTTGCGTTCAAATCCTATTCGGAAGCTCTCTTTCTCTCCTTTTCTCCTCCTTCTTCTTCTGGTTTCTGTGTTTGCCTCCGTTCAGGGTTTTTCTGCGGAAGTTGAGAAAGTGGAGTTGGATGGACCTAGAGATCTCGGTCGACGGAGCATGTTTTCTGATCCAGAAATTAGGATTTCCTTGAGCAATGCCGATACGGTTGCTGCAAATAAGGATGGTGTGGACTCAAAAGATCTTGCAAATAAGGATGGTGTGGACTCAAAAGATCTTAATCTTGACCTGGACTCCATTGGCCTTGGAGTCTTCGACGCGTTCTTTGCAAGTTTGTCCATGATAATTGTCAGTGAGATTGGAGACGAGACGTTTATAATAGCTGCACTTATGGCTATGCGCCACCCCAAGTCCATTGTTTTATCTGGTGCGCTCACTGCTCTGATTGTAATGACAGTACTATCAACTGGTTTAGTTCTGTATGCATTTTTTGGATTGCGGTTACTTTACATTGCTTGGAGATTCAAATCGGATTCAAAATCTTCCACGAAAAAGGAAATGGAAGAAGTAGAGGAGAAGCTTGAAGCTGGACAATCCAAGACGTCCTTCCGCCGCTTCTTTCTGCGATTTTGCACTCCCATATTCTTGGAGTCGTTTATTTTGACGTTTCTTGCCGAGTGGGGAGATCGAAGTCAGATAGCAACAATCGCTCTAGCAACACACAAAAATGCTCTTGGAGTGGCTGTGGGAGCCATATTGGGGCATTCAATTTGTACATCAATGGCTGTGATTGGTGGAAGCTTGTTGGCATCAAAGATATCTCAAGGCACTGTTGCGACTGTTGGAGGCTTGCTCTTCCTTGGCTTCTCCTTCTCTTCCTATTTCTTCCCCCCTCTATAAGTCTCTTTTATAGTAACTCTTTCCAACTTTTTTTTTTCTTTTCTTTTTTACTAGTTTGGGTAAGTCGGATGTTTTGGCCTTTTCGTGTATCGATTTAGCTTACGGAATATGTATACATACTGATATTAACGCTATAGTTTCAAAAGGAAATTCATGTCTAGTCTTTTTGTGCTCGAGGTCGAAGAACATTAGTACTTAGATGTTTGGGGTGCGGGTGGGGGAGAGAGGGTGACGACCCTGTTGAATTGGTTTCTCTCCTTCGATATCTTGGGGAAGTATGCTATTTTGGCCTTTTCGTGTATTGATCTAGCATATGGTATACATGTACGTACAAATATTAACTCTATAGTTCAAAAGGAAATTTATGTATAGTCTTTTTGTGCTCGAGGTCG

Coding sequence (CDS)

ATGGGTTTGCGTTCAAATCCTATTCGGAAGCTCTCTTTCTCTCCTTTTCTCCTCCTTCTTCTTCTGGTTTCTGTGTTTGCCTCCGTTCAGGGTTTTTCTGCGGAAGTTGAGAAAGTGGAGTTGGATGGACCTAGAGATCTCGGTCGACGGAGCATGTTTTCTGATCCAGAAATTAGGATTTCCTTGAGCAATGCCGATACGGTTGCTGCAAATAAGGATGGTGTGGACTCAAAAGATCTTGCAAATAAGGATGGTGTGGACTCAAAAGATCTTAATCTTGACCTGGACTCCATTGGCCTTGGAGTCTTCGACGCGTTCTTTGCAAGTTTGTCCATGATAATTGTCAGTGAGATTGGAGACGAGACGTTTATAATAGCTGCACTTATGGCTATGCGCCACCCCAAGTCCATTGTTTTATCTGGTGCGCTCACTGCTCTGATTGTAATGACAGTACTATCAACTGGTTTAGTTCTGTATGCATTTTTTGGATTGCGGTTACTTTACATTGCTTGGAGATTCAAATCGGATTCAAAATCTTCCACGAAAAAGGAAATGGAAGAAGTAGAGGAGAAGCTTGAAGCTGGACAATCCAAGACGTCCTTCCGCCGCTTCTTTCTGCGATTTTGCACTCCCATATTCTTGGAGTCGTTTATTTTGACGTTTCTTGCCGAGTGGGGAGATCGAAGTCAGATAGCAACAATCGCTCTAGCAACACACAAAAATGCTCTTGGAGTGGCTGTGGGAGCCATATTGGGGCATTCAATTTGTACATCAATGGCTGTGATTGGTGGAAGCTTGTTGGCATCAAAGATATCTCAAGGCACTGTTGCGACTGTTGGAGGCTTGCTCTTCCTTGGCTTCTCCTTCTCTTCCTATTTCTTCCCCCCTCTATAA

Protein sequence

MGLRSNPIRKLSFSPFLLLLLLVSVFASVQGFSAEVEKVELDGPRDLGRRSMFSDPEIRISLSNADTVAANKDGVDSKDLANKDGVDSKDLNLDLDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALTALIVMTVLSTGLVLYAFFGLRLLYIAWRFKSDSKSSTKKEMEEVEEKLEAGQSKTSFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGAILGHSICTSMAVIGGSLLASKISQGTVATVGGLLFLGFSFSSYFFPPL

Homology

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BLAST of CmoCh12G009580 vs. ExPASy Swiss-Prot
Match: Q93Y38 (GDT1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=At5g36290 PE=2 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.3e-85
Identity = 192/316 (60.76%), Postives = 223/316 (70.57%), Query Frame = 0


Query: 1   MGLRSNPIRKLSFSPFLLLLLLVSVFASVQGFSAEVEKVELDGP-RDLGRRSMFSDPEIR 60
           MGL SNP R +  +    +  LVS  +         E+ E +G  ++LGRR M     I 
Sbjct: 1   MGLISNPTRLILVA---TIFFLVSSISGQDSVVENNERQESEGSGKELGRRGMVGTERIG 60

Query: 61  ISLSNADTVAANKDGVDSKDLANKDGVDSKDLNLDLDSIGLGVFDAFFASLSMIIVSEIG 120
           +     DTV               D + +  LNLDLD+    VFDA F+S SMI+V+EIG
Sbjct: 61  V-----DTVV--------------DNIGALGLNLDLDATAPSVFDALFSSFSMILVTEIG 120

Query: 121 DETFIIAALMAMRHPKSIVLSGALTALIVMTVLSTGL------------------VLYAF 180
           DETFIIAALMAMRHPK+ VLSGAL+AL VMT+LSTGL                  VLYAF
Sbjct: 121 DETFIIAALMAMRHPKATVLSGALSALFVMTILSTGLGRIVPNLISRKHTNSAATVLYAF 180

Query: 181 FGLRLLYIAWRFKSDSKSSTKKEMEEVEEKLEAGQSKTSFRRFFLRFCTPIFLESFILTF 240
           FGLRLLYIAWR  +DSKS+ KKEMEEVEEKLE+GQ KT FRR F RFCTPIFLESFILTF
Sbjct: 181 FGLRLLYIAWR-STDSKSNQKKEMEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTF 240

Query: 241 LAEWGDRSQIATIALATHKNALGVAVGAILGHSICTSMAVIGGSLLASKISQGTVATVGG 298
           LAEWGDRSQIATIALATHKNA+GVA+GA +GH++CTS+AV+GGS+LAS+ISQ TVATVGG
Sbjct: 241 LAEWGDRSQIATIALATHKNAIGVAIGASIGHTVCTSLAVVGGSMLASRISQRTVATVGG 293

[Close]

BLAST of CmoCh12G009580 vs. ExPASy Swiss-Prot
Match: A2YXC7 (GDT1-like protein 4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_29993 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 8.6e-85
Identity = 173/221 (78.28%), Postives = 191/221 (86.43%), Query Frame = 0


Query: 95  LDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALTALIVMTVLST 154
           ++  GLG+FDAFFASLSMI+VSEIGDETFIIAALMAMRHPKS VLSGAL+AL+VMT+LST
Sbjct: 63  MEKAGLGLFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILST 122

Query: 155 GL------------------VLYAFFGLRLLYIAWRFKSDSKSSTKKEMEEVEEKLEAGQ 214
           GL                  VLYAFFGLRLLYIAWR  SDSK+S KKE+EEVEEKLEAGQ
Sbjct: 123 GLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWR--SDSKASQKKEIEEVEEKLEAGQ 182

Query: 215 SKTSFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGAILGHSIC 274
            K++FRR F RFCTPIFLESF+LTFLAEWGDRSQIATIALATHKNA+GVAVGA LGH+IC
Sbjct: 183 GKSTFRRIFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATLGHTIC 242

Query: 275 TSMAVIGGSLLASKISQGTVATVGGLLFLGFSFSSYFFPPL 298
           TS AV+GGS+LASKISQGTVAT+GGLLFLGFS SSYF+PPL
Sbjct: 243 TSFAVVGGSMLASKISQGTVATIGGLLFLGFSLSSYFYPPL 281

[Close]

BLAST of CmoCh12G009580 vs. ExPASy Swiss-Prot
Match: Q6ZIB9 (GDT1-like protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0528500 PE=2 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 8.6e-85
Identity = 173/221 (78.28%), Postives = 191/221 (86.43%), Query Frame = 0


Query: 95  LDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALTALIVMTVLST 154
           ++  GLG+FDAFFASLSMI+VSEIGDETFIIAALMAMRHPKS VLSGAL+AL+VMT+LST
Sbjct: 64  MEKAGLGLFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILST 123

Query: 155 GL------------------VLYAFFGLRLLYIAWRFKSDSKSSTKKEMEEVEEKLEAGQ 214
           GL                  VLYAFFGLRLLYIAWR  SDSK+S KKE+EEVEEKLEAGQ
Sbjct: 124 GLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWR--SDSKASQKKEIEEVEEKLEAGQ 183

Query: 215 SKTSFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGAILGHSIC 274
            K++FRR F RFCTPIFLESF+LTFLAEWGDRSQIATIALATHKNA+GVAVGA LGH+IC
Sbjct: 184 GKSTFRRIFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATLGHTIC 243

Query: 275 TSMAVIGGSLLASKISQGTVATVGGLLFLGFSFSSYFFPPL 298
           TS AV+GGS+LASKISQGTVAT+GGLLFLGFS SSYF+PPL
Sbjct: 244 TSFAVVGGSMLASKISQGTVATIGGLLFLGFSLSSYFYPPL 282

[Close]

BLAST of CmoCh12G009580 vs. ExPASy Swiss-Prot
Match: A2ZE50 (GDT1-like protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_36063 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.3e-82
Identity = 174/233 (74.68%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 83  KDGVDSKDLNLDLDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGA 142
           K+ V   D  + LD +G G+FDA FASLSMI+VSEIGDETFIIAALMAMRHPKSIVLSGA
Sbjct: 49  KEAVVEGDHGVALDEVGPGLFDALFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGA 108

Query: 143 LTALIVMTVLSTGL------------------VLYAFFGLRLLYIAWRFKSDSKSSTKKE 202
           L+AL VMTVLSTGL                  VLY FFGLRLLYIAW  KSD K S KKE
Sbjct: 109 LSALYVMTVLSTGLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIAW--KSDPKGSQKKE 168

Query: 203 MEEVEEKLEAGQSKTSFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALG 262
           MEEVEEKLE+GQ K++ RRFF RFCTPIFLE+FILTFLAEWGDRSQIATIALATHKNA+G
Sbjct: 169 MEEVEEKLESGQGKSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIG 228

Query: 263 VAVGAILGHSICTSMAVIGGSLLASKISQGTVATVGGLLFLGFSFSSYFFPPL 298
           VAVGA LGH++CTS+AVIGGS+LASKISQ TVAT+GG+LFLGFS SSYF+PPL
Sbjct: 229 VAVGASLGHTVCTSLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYPPL 279

[Close]

BLAST of CmoCh12G009580 vs. ExPASy Swiss-Prot
Match: Q2R4J1 (GDT1-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0472500 PE=2 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.3e-82
Identity = 174/233 (74.68%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 83  KDGVDSKDLNLDLDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGA 142
           K+ V   D  + LD +G G+FDA FASLSMI+VSEIGDETFIIAALMAMRHPKSIVLSGA
Sbjct: 49  KEAVVEGDHGVALDEVGPGLFDALFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGA 108

Query: 143 LTALIVMTVLSTGL------------------VLYAFFGLRLLYIAWRFKSDSKSSTKKE 202
           L+AL VMTVLSTGL                  VLY FFGLRLLYIAW  KSD K S KKE
Sbjct: 109 LSALYVMTVLSTGLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIAW--KSDPKGSQKKE 168

Query: 203 MEEVEEKLEAGQSKTSFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALG 262
           MEEVEEKLE+GQ K++ RRFF RFCTPIFLE+FILTFLAEWGDRSQIATIALATHKNA+G
Sbjct: 169 MEEVEEKLESGQGKSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIG 228

Query: 263 VAVGAILGHSICTSMAVIGGSLLASKISQGTVATVGGLLFLGFSFSSYFFPPL 298
           VAVGA LGH++CTS+AVIGGS+LASKISQ TVAT+GG+LFLGFS SSYF+PPL
Sbjct: 229 VAVGASLGHTVCTSLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYPPL 279

[Close]

BLAST of CmoCh12G009580 vs. ExPASy TrEMBL
Match: A0A6J1HR62 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxima OX=3661 GN=LOC111465385 PE=3 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 6.3e-131
Identity = 273/315 (86.67%), Postives = 277/315 (87.94%), Query Frame = 0


Query: 1   MGLRSNPIRKLSFSPFLLLLLLVSVFASVQGFSAEVEKVELDGPRDLGRRSMFSDPEIRI 60
           MGLRSNPIR LSFSPFLLLLLLVS+FASVQGFSAEVEKVELDGP+DLGRRS       +I
Sbjct: 1   MGLRSNPIRNLSFSPFLLLLLLVSLFASVQGFSAEVEKVELDGPKDLGRRS-------KI 60

Query: 61  SLSNADTVAANKDGVDSKDLANKDGVDSKDLNLDLDSIGLGVFDAFFASLSMIIVSEIGD 120
           SLSNADTVA           ANKDGVDSKDLNLDLDSIGLGVFDAFFASLSMIIVSEIGD
Sbjct: 61  SLSNADTVA-----------ANKDGVDSKDLNLDLDSIGLGVFDAFFASLSMIIVSEIGD 120

Query: 121 ETFIIAALMAMRHPKSIVLSGALTALIVMTVLSTGL------------------VLYAFF 180
           ETFIIAALMAMRHPKSIVLSGALTALIVMTVLSTGL                  VLYAFF
Sbjct: 121 ETFIIAALMAMRHPKSIVLSGALTALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFF 180

Query: 181 GLRLLYIAWRFKSDSKSSTKKEMEEVEEKLEAGQSKTSFRRFFLRFCTPIFLESFILTFL 240
           GLRLLYIAWR KSDSKSSTKKEMEEVEEKLEAGQSKTSFRRFFLRFCTPIFLESFILTFL
Sbjct: 181 GLRLLYIAWRSKSDSKSSTKKEMEEVEEKLEAGQSKTSFRRFFLRFCTPIFLESFILTFL 240

Query: 241 AEWGDRSQIATIALATHKNALGVAVGAILGHSICTSMAVIGGSLLASKISQGTVATVGGL 298
           AEWGDRSQIATIALATHKNALGVAVGAILGHSICTSMAVIGGSLLASKISQGT+ATVGGL
Sbjct: 241 AEWGDRSQIATIALATHKNALGVAVGAILGHSICTSMAVIGGSLLASKISQGTIATVGGL 297

[Close]

BLAST of CmoCh12G009580 vs. ExPASy TrEMBL
Match: A0A6J1KA70 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxima OX=3661 GN=LOC111492492 PE=3 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 4.2e-119
Identity = 253/316 (80.06%), Postives = 267/316 (84.49%), Query Frame = 0


Query: 1   MGLRSNPIRKLSFSP-FLLLLLLVSVFASVQGFSAEVEKVELDGPRDLGRRSMFSDPEIR 60
           MGLRSNP   LSFSP  +LLLLLVS+FASVQ +SAEVEK ELDGP+DLGRRS       +
Sbjct: 1   MGLRSNPTGNLSFSPSLILLLLLVSLFASVQVYSAEVEKEELDGPKDLGRRS-------K 60

Query: 61  ISLSNADTVAANKDGVDSKDLANKDGVDSKDLNLDLDSIGLGVFDAFFASLSMIIVSEIG 120
           IS +N DT+A           A KD VDS+DLNLDLDS+GLGVFDAFFASLSMIIVSEIG
Sbjct: 61  ISWNNVDTIA-----------AKKDVVDSEDLNLDLDSVGLGVFDAFFASLSMIIVSEIG 120

Query: 121 DETFIIAALMAMRHPKSIVLSGALTALIVMTVLSTGL------------------VLYAF 180
           DETFIIAALMAMRHPKSIVLSGAL+ALIVMTVLSTGL                  VLYAF
Sbjct: 121 DETFIIAALMAMRHPKSIVLSGALSALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAF 180

Query: 181 FGLRLLYIAWRFKSDSKSSTKKEMEEVEEKLEAGQSKTSFRRFFLRFCTPIFLESFILTF 240
           FGLRLLYIAWR K+DSKSSTKKEMEEVEEKLEAGQSKT+FRRFFLRFCTPIFLESFILTF
Sbjct: 181 FGLRLLYIAWRSKADSKSSTKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTF 240

Query: 241 LAEWGDRSQIATIALATHKNALGVAVGAILGHSICTSMAVIGGSLLASKISQGTVATVGG 298
           LAEWGDRSQIATIALATHKNALGVAVGAILGHS+CTSMAVIGGS+LASKISQGTVATVGG
Sbjct: 241 LAEWGDRSQIATIALATHKNALGVAVGAILGHSVCTSMAVIGGSMLASKISQGTVATVGG 298

[Close]

BLAST of CmoCh12G009580 vs. ExPASy TrEMBL
Match: A0A6J1EPP7 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita moschata OX=3662 GN=LOC111436248 PE=3 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 2.1e-118
Identity = 253/316 (80.06%), Postives = 266/316 (84.18%), Query Frame = 0


Query: 1   MGLRSNPIRKLSFSP-FLLLLLLVSVFASVQGFSAEVEKVELDGPRDLGRRSMFSDPEIR 60
           MGLRSNP   LSFSP  +LLLLLVS+FASVQ FSAEVEK ELD P+DLGRRS       +
Sbjct: 1   MGLRSNPTGNLSFSPSLILLLLLVSLFASVQVFSAEVEKEELDVPKDLGRRS-------K 60

Query: 61  ISLSNADTVAANKDGVDSKDLANKDGVDSKDLNLDLDSIGLGVFDAFFASLSMIIVSEIG 120
           IS +N DT+A           A KD VDS+DLNLDLDS+GLGVFDAFFASLSMIIVSEIG
Sbjct: 61  ISWNNVDTIA-----------AKKDVVDSEDLNLDLDSVGLGVFDAFFASLSMIIVSEIG 120

Query: 121 DETFIIAALMAMRHPKSIVLSGALTALIVMTVLSTGL------------------VLYAF 180
           DETFIIAALMAMRHPKSIVLSGAL+ALIVMTVLSTGL                  VLYAF
Sbjct: 121 DETFIIAALMAMRHPKSIVLSGALSALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAF 180

Query: 181 FGLRLLYIAWRFKSDSKSSTKKEMEEVEEKLEAGQSKTSFRRFFLRFCTPIFLESFILTF 240
           FGLRLLYIAWR K+DSKSSTKKEMEEVEEKLEAGQSKT+FRRFFLRFCTPIFLESFILTF
Sbjct: 181 FGLRLLYIAWRSKADSKSSTKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTF 240

Query: 241 LAEWGDRSQIATIALATHKNALGVAVGAILGHSICTSMAVIGGSLLASKISQGTVATVGG 298
           LAEWGDRSQIATIALATHKNALGVAVGAILGHS+CTSMAVIGGS+LASKISQGTVATVGG
Sbjct: 241 LAEWGDRSQIATIALATHKNALGVAVGAILGHSVCTSMAVIGGSMLASKISQGTVATVGG 298

[Close]

BLAST of CmoCh12G009580 vs. ExPASy TrEMBL
Match: A0A5A7U3P6 (GDT1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00130 PE=3 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 4.7e-118
Identity = 254/316 (80.38%), Postives = 266/316 (84.18%), Query Frame = 0


Query: 1   MGLRSNPIRKLSFSP-FLLLLLLVSVFASVQGFSAEVEKVELDGPRDLGRRSMFSDPEIR 60
           MGLRSNP   LSFSP FLL LLL+S+FAS+Q +SAE EK ELDGP+DLGRRS       +
Sbjct: 1   MGLRSNPTTTLSFSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRS-------K 60

Query: 61  ISLSNADTVAANKDGVDSKDLANKDGVDSKDLNLDLDSIGLGVFDAFFASLSMIIVSEIG 120
           IS SN+DTVA           A KDGVDS+DLNLD+DSIGLGVFDAFFASLSMIIVSEIG
Sbjct: 61  ISWSNSDTVA-----------AKKDGVDSEDLNLDMDSIGLGVFDAFFASLSMIIVSEIG 120

Query: 121 DETFIIAALMAMRHPKSIVLSGALTALIVMTVLSTGL------------------VLYAF 180
           DETFIIAALMAMRHPKSIVLSGAL ALIVMTVLSTGL                  VLYAF
Sbjct: 121 DETFIIAALMAMRHPKSIVLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAF 180

Query: 181 FGLRLLYIAWRFKSDSKSSTKKEMEEVEEKLEAGQSKTSFRRFFLRFCTPIFLESFILTF 240
           FGLRLLYIAWR KS+ KSSTKKEMEEVEEKLEAGQSKT+FRRFFLRFCTPIFLESFILTF
Sbjct: 181 FGLRLLYIAWRSKSE-KSSTKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTF 240

Query: 241 LAEWGDRSQIATIALATHKNALGVAVGAILGHSICTSMAVIGGSLLASKISQGTVATVGG 298
           LAEWGDRSQIATIALATHKNALGVAVGAILGHSICTSMAVIGGS+LASKISQGTVATVGG
Sbjct: 241 LAEWGDRSQIATIALATHKNALGVAVGAILGHSICTSMAVIGGSMLASKISQGTVATVGG 297

[Close]

BLAST of CmoCh12G009580 vs. ExPASy TrEMBL
Match: A0A1S3B4E3 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucumis melo OX=3656 GN=LOC103485889 PE=3 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 4.7e-118
Identity = 254/316 (80.38%), Postives = 266/316 (84.18%), Query Frame = 0


Query: 1   MGLRSNPIRKLSFSP-FLLLLLLVSVFASVQGFSAEVEKVELDGPRDLGRRSMFSDPEIR 60
           MGLRSNP   LSFSP FLL LLL+S+FAS+Q +SAE EK ELDGP+DLGRRS       +
Sbjct: 1   MGLRSNPTTTLSFSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRS-------K 60

Query: 61  ISLSNADTVAANKDGVDSKDLANKDGVDSKDLNLDLDSIGLGVFDAFFASLSMIIVSEIG 120
           IS SN+DTVA           A KDGVDS+DLNLD+DSIGLGVFDAFFASLSMIIVSEIG
Sbjct: 61  ISWSNSDTVA-----------AKKDGVDSEDLNLDMDSIGLGVFDAFFASLSMIIVSEIG 120

Query: 121 DETFIIAALMAMRHPKSIVLSGALTALIVMTVLSTGL------------------VLYAF 180
           DETFIIAALMAMRHPKSIVLSGAL ALIVMTVLSTGL                  VLYAF
Sbjct: 121 DETFIIAALMAMRHPKSIVLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAF 180

Query: 181 FGLRLLYIAWRFKSDSKSSTKKEMEEVEEKLEAGQSKTSFRRFFLRFCTPIFLESFILTF 240
           FGLRLLYIAWR KS+ KSSTKKEMEEVEEKLEAGQSKT+FRRFFLRFCTPIFLESFILTF
Sbjct: 181 FGLRLLYIAWRSKSE-KSSTKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTF 240

Query: 241 LAEWGDRSQIATIALATHKNALGVAVGAILGHSICTSMAVIGGSLLASKISQGTVATVGG 298
           LAEWGDRSQIATIALATHKNALGVAVGAILGHSICTSMAVIGGS+LASKISQGTVATVGG
Sbjct: 241 LAEWGDRSQIATIALATHKNALGVAVGAILGHSICTSMAVIGGSMLASKISQGTVATVGG 297

[Close]

BLAST of CmoCh12G009580 vs. TAIR 10
Match: AT5G36290.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 317.8 bits (813), Expect = 9.4e-87
Identity = 192/316 (60.76%), Postives = 223/316 (70.57%), Query Frame = 0


Query: 1   MGLRSNPIRKLSFSPFLLLLLLVSVFASVQGFSAEVEKVELDGP-RDLGRRSMFSDPEIR 60
           MGL SNP R +  +    +  LVS  +         E+ E +G  ++LGRR M     I 
Sbjct: 1   MGLISNPTRLILVA---TIFFLVSSISGQDSVVENNERQESEGSGKELGRRGMVGTERIG 60

Query: 61  ISLSNADTVAANKDGVDSKDLANKDGVDSKDLNLDLDSIGLGVFDAFFASLSMIIVSEIG 120
           +     DTV               D + +  LNLDLD+    VFDA F+S SMI+V+EIG
Sbjct: 61  V-----DTVV--------------DNIGALGLNLDLDATAPSVFDALFSSFSMILVTEIG 120

Query: 121 DETFIIAALMAMRHPKSIVLSGALTALIVMTVLSTGL------------------VLYAF 180
           DETFIIAALMAMRHPK+ VLSGAL+AL VMT+LSTGL                  VLYAF
Sbjct: 121 DETFIIAALMAMRHPKATVLSGALSALFVMTILSTGLGRIVPNLISRKHTNSAATVLYAF 180

Query: 181 FGLRLLYIAWRFKSDSKSSTKKEMEEVEEKLEAGQSKTSFRRFFLRFCTPIFLESFILTF 240
           FGLRLLYIAWR  +DSKS+ KKEMEEVEEKLE+GQ KT FRR F RFCTPIFLESFILTF
Sbjct: 181 FGLRLLYIAWR-STDSKSNQKKEMEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTF 240

Query: 241 LAEWGDRSQIATIALATHKNALGVAVGAILGHSICTSMAVIGGSLLASKISQGTVATVGG 298
           LAEWGDRSQIATIALATHKNA+GVA+GA +GH++CTS+AV+GGS+LAS+ISQ TVATVGG
Sbjct: 241 LAEWGDRSQIATIALATHKNAIGVAIGASIGHTVCTSLAVVGGSMLASRISQRTVATVGG 293

[Close]

BLAST of CmoCh12G009580 vs. TAIR 10
Match: AT5G36290.2 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 317.8 bits (813), Expect = 9.4e-87
Identity = 192/316 (60.76%), Postives = 223/316 (70.57%), Query Frame = 0


Query: 1   MGLRSNPIRKLSFSPFLLLLLLVSVFASVQGFSAEVEKVELDGP-RDLGRRSMFSDPEIR 60
           MGL SNP R +  +    +  LVS  +         E+ E +G  ++LGRR M     I 
Sbjct: 1   MGLISNPTRLILVA---TIFFLVSSISGQDSVVENNERQESEGSGKELGRRGMVGTERIG 60

Query: 61  ISLSNADTVAANKDGVDSKDLANKDGVDSKDLNLDLDSIGLGVFDAFFASLSMIIVSEIG 120
           +     DTV               D + +  LNLDLD+    VFDA F+S SMI+V+EIG
Sbjct: 61  V-----DTVV--------------DNIGALGLNLDLDATAPSVFDALFSSFSMILVTEIG 120

Query: 121 DETFIIAALMAMRHPKSIVLSGALTALIVMTVLSTGL------------------VLYAF 180
           DETFIIAALMAMRHPK+ VLSGAL+AL VMT+LSTGL                  VLYAF
Sbjct: 121 DETFIIAALMAMRHPKATVLSGALSALFVMTILSTGLGRIVPNLISRKHTNSAATVLYAF 180

Query: 181 FGLRLLYIAWRFKSDSKSSTKKEMEEVEEKLEAGQSKTSFRRFFLRFCTPIFLESFILTF 240
           FGLRLLYIAWR  +DSKS+ KKEMEEVEEKLE+GQ KT FRR F RFCTPIFLESFILTF
Sbjct: 181 FGLRLLYIAWR-STDSKSNQKKEMEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTF 240

Query: 241 LAEWGDRSQIATIALATHKNALGVAVGAILGHSICTSMAVIGGSLLASKISQGTVATVGG 298
           LAEWGDRSQIATIALATHKNA+GVA+GA +GH++CTS+AV+GGS+LAS+ISQ TVATVGG
Sbjct: 241 LAEWGDRSQIATIALATHKNAIGVAIGASIGHTVCTSLAVVGGSMLASRISQRTVATVGG 293

[Close]

BLAST of CmoCh12G009580 vs. TAIR 10
Match: AT1G25520.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-31
Identity = 91/223 (40.81%), Postives = 125/223 (56.05%), Query Frame = 0


Query: 102 VFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALTALIVMTVLSTGL----- 161
           V   F  SL+M  VSEIGD+TF  AA++AMR+P+ +VL+G L+ALIVMT+LS  L     
Sbjct: 4   VLQGFTKSLAMTFVSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWAAP 63

Query: 162 -----------VLYAFFGLRLLYIAWRFKSDSKSSTKKEMEEVEEKLEA----------- 221
                          FFG  L  +   FK     S  +E+ EVE +L+A           
Sbjct: 64  NLISRKWTHHITTLLFFGFGLWSLWDGFKEGGGGS--EELAEVEAELDADLKANGKSPKD 123

Query: 222 -----GQSKTSFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGA 281
                 ++K   R F  +F +PIFL++F + F  EWGD+SQ+ATI LA  +N  GV +G 
Sbjct: 124 SSKREDENKKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLGG 183

Query: 282 ILGHSICTSMAVIGGSLLASKISQGTVATVGGLLFLGFSFSSY 293
           ++   +CT+ AVIGG  LAS+IS+  VA  GG+LF+ F   SY
Sbjct: 184 VVAQFLCTTAAVIGGKSLASQISERIVALSGGMLFIIFGIQSY 224

[Close]

BLAST of CmoCh12G009580 vs. TAIR 10
Match: AT1G68650.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-31
Identity = 90/225 (40.00%), Postives = 127/225 (56.44%), Query Frame = 0


Query: 102 VFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALTALIVMTVLSTGL----- 161
           +   F  SL+M  +SEIGD+TF  AA++AMR+P+ +VL+G L+ALIVMT+LS  L     
Sbjct: 4   LLQGFTKSLAMTFLSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWAAP 63

Query: 162 -----------VLYAFFGLRLLYIAWRFKSDSKSSTKKEMEEVEEKLEAGQSKTS----- 221
                        + FFG  L  +   FK    S   +E+ EVE +L++   KT+     
Sbjct: 64  NLISRKWTHHITTFLFFGFGLWSLWDGFKEGGGS---EELAEVEAELDSDLKKTNDQSKN 123

Query: 222 ----------FRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGAI 281
                      R F   F +PIFL++F + F  EWGD+SQ+ATI LA  +N LGV +G I
Sbjct: 124 SKIEDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGGI 183

Query: 282 LGHSICTSMAVIGGSLLASKISQGTVATVGGLLFLGFSFSSYFFP 296
           +  ++CT+ AV+GG  LAS+IS+  VA  GG+LF+ F   S   P
Sbjct: 184 VAQTLCTTAAVLGGKSLASQISERIVALSGGMLFIIFGIQSLLTP 225

[Close]

BLAST of CmoCh12G009580 vs. TAIR 10
Match: AT4G13590.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 119.0 bits (297), Expect = 6.4e-27
Identity = 85/214 (39.72%), Postives = 122/214 (57.01%), Query Frame = 0


Query: 106 FFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALTALIVMTVLS------------ 165
           F A+ S+I VSEIGD+TF IAAL+AM++ K++VL G++ AL +MT+LS            
Sbjct: 146 FTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTILSVVIGKIFQSVPA 205

Query: 166 -----------TGLVLYAFFGLRLLYIAWRF---KSDSKSSTKKEMEEVEEKLEAGQSKT 225
                        + L  FFGL+ +  AW     ++ +   T  E+ E  E  E  + K 
Sbjct: 206 QFQTTLPIGEYAAIALLMFFGLKSIKDAWDLPPVEAKNGEETGIELGEYSEAEELVKEKA 265

Query: 226 SFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGAILGHSICTSM 285
           S +   L     I  +SF L F AEWGDRS +AT+AL   ++ LGVA GAI GH + T +
Sbjct: 266 SKK---LTNPLEILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGAIAGHLVATVL 325

Query: 286 AVIGGSLLASKISQGTVATVGGLLFLGFSFSSYF 294
           A++GG+ LA+ IS+  V  VGG LFL F+ +++F
Sbjct: 326 AIMGGAFLANYISEKLVGYVGGALFLVFAAATFF 356

The following BLAST results are available for this feature:

BLAST of CmoCh12G009580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93Y38	1.3e-85	60.76	GDT1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=At5g36290 PE=2 SV=1	[more]
A2YXC7	8.6e-85	78.28	GDT1-like protein 4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_29993 PE=3 SV=...	[more]
Q6ZIB9	8.6e-85	78.28	GDT1-like protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0528500 PE=...	[more]
A2ZE50	2.3e-82	74.68	GDT1-like protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_36063 PE=3 SV=...	[more]
Q2R4J1	2.3e-82	74.68	GDT1-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0472500 PE=...	[more]

BLAST of CmoCh12G009580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HR62	6.3e-131	86.67	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23...	[more]
A0A6J1KA70	4.2e-119	80.06	putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxi...	[more]
A0A6J1EPP7	2.1e-118	80.06	putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita mosc...	[more]
A0A5A7U3P6	4.7e-118	80.38	GDT1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G...	[more]
A0A1S3B4E3	4.7e-118	80.38	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23...	[more]

BLAST of CmoCh12G009580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G36290.1	9.4e-87	60.76	Uncharacterized protein family (UPF0016)	[more]
AT5G36290.2	9.4e-87	60.76	Uncharacterized protein family (UPF0016)	[more]
AT1G25520.1	1.1e-31	40.81	Uncharacterized protein family (UPF0016)	[more]
AT1G68650.1	3.3e-31	40.00	Uncharacterized protein family (UPF0016)	[more]
AT4G13590.1	6.4e-27	39.72	Uncharacterized protein family (UPF0016)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 178..198
None	No IPR available	PANTHER	PTHR12608:SF9	GDT1-LIKE PROTEIN 3	coord: 157..295 coord: 81..156
IPR001727	Gdt1 family	PFAM	PF01169	UPF0016	coord: 108..156 e-value: 2.6E-12 score: 46.8 coord: 215..287 e-value: 3.4E-20 score: 72.1
IPR001727	Gdt1 family	PANTHER	PTHR12608	TRANSMEMBRANE PROTEIN HTP-1 RELATED	coord: 157..295 coord: 81..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G009580.1	CmoCh12G009580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070588	calcium ion transmembrane transport
biological_process	GO:0032468	Golgi calcium ion homeostasis
biological_process	GO:0032472	Golgi calcium ion transport
biological_process	GO:0071421	manganese ion transmembrane transport
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015085	calcium ion transmembrane transporter activity
molecular_function	GO:0005384	manganese ion transmembrane transporter activity
molecular_function	GO:0008270	zinc ion binding