CmoCh12G009490 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G009490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	TATA box-binding protein-associated factor RNA polymerase I subunit B
Location	Cmo_Chr12: 8860709 .. 8875292 (-)
RNA-Seq Expression	CmoCh12G009490
Synteny	CmoCh12G009490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGAGCAATGGTTAGTGGCTGCGGCCATTTTTGGAGCTTATATCAATTTTAATGGCTTCTCTCTGGAACCCACCTGTTGCTTCCTTCTCCCCAGTCAGACCCACCTTGAATCCATCAAAAATGGCGTCCAATTTCAACCATACCCTTCGTCGCAGAGGCAACGATGCTGGCATTGGCGATGGCAAAGGCGTCTCGTCTTCTCTTTCGATGGCGGCTGGTTGGAGCTCTGATGGTGGCGATAAGAGCACTAGGAAGCTTCCTGTTCTGCTGTTTGATATCATGGGTACCATTGTTCGTGATCCATTCTATGAAGATGTTCCCGCCTTTTTCAGGTGATTTGACTTTTTGTTTTGATTTTTAGTGTGAATTGTGTTGTATAGTTTATGGGAAGATCTGGCATCTGGATGAATGAAAACAGGGGAGAAGATTTATGGTTTGTTAATCCCATGGCCACAGTGCATTTAACATGTTTGCTTAAATGACTGATGGAATTCTCCTTTTGTGTTCATATTGTACACTTGGCTTGTATTAATCATAGAACTTGTAATGTTATAATGGCTAGTCAATTCGAGCGTAGCTCAATGGATATAGGGGCTAGTCAATTCGAGCGTAGCTCAATGGATATAGGGGCTAGCCAATTCGAGCGTAGCTCAATGGATATAGGGGCTAGCCAATTCGAGCGTAGCTCAATGGATATAGGGGCTAGCCAATTCGAACATAGCTCAATAGATAAGCAGCTAGCCAATTCGAGCATAGCTCAATAGATAAGCAGCTAGCCAATTCGAGCATAGCTCAATAGATAAGCAGCTAGCCAATTCGAGCATAGCTCAATAGATAAGCAGCTAGCCAATTCGAGCATAGCTTAATGGATATAGCAGCTAGCCATTTCGATCATAGCTCAATGGATAAGCAGCTAGTTAATTTGATCATAGCTAATTCGAGCATTGTTCGATGATAAGCGGCTAGCCAATTCGAACATAGCTCAATGGATATAGGGGCTAGTCAATTCAAGCATAGTTCAATGGATGTAGGAGCTAGTCAATTGGAGCATAGCTCAATGGATAAGCGGCTAGCCAATTGGAGCATAGCTCAATAGATAAGCGGCAATTGCCGATTTGATGGTTCGATACACTAATGGTCGATGATTCGATAATCCGCCTGCAATTGTTGACTTGACAAAGGGAATCATAATATATAGGTTTGAACTTCCCGTTTCTCAACTGGAATCATAATTATAGCTTCTACCTGTTTTGTGCAAAAGGGGAACAACTTTTTTTTTTCCTGTTAACTTCTCTTTCATGTTTCATTTGTTTGAACTTTCACATTATTGTTGGCCTTTTAAGGTTCTTTTTCAACGCCATAAATAGACATTCGTGTTGTTGATTTAGTACGAAGATTTTGGATATTATAATGAAAGTTGCATTGTTATAAAACATGAACTAGTGTTTAGATTTTTCAAGTAGTCTTGATCAAACTACTATGAGTTTTTTTTTACTCTTGATCTTAATCATCAAGGTAATCCGTTCCTAAACATTCCCTTGGATTGATTCCTTACCGTTTTTTGGAGTTCTTAGATAGTTTAGATCTAAAGGTCTTGTTCTTAAGAAAACGAACCGTGAAATAAAGTAAGTCGTAGTTTTCACTAGTATGCAGGCTCTTTGTTTTTGCGAAATTTAGTACTTATTATGATGCCTTAACTAATTGGATCTGAATTCACTGCTCAGAATGCCCATGGAGGAACTACTTGAACTCAAACACCCAACCGTGTGGCTAGAATTTGAGAAGGGTTTGATTGATGAGGTATGTCTACCTTCTTATTAGCCTATGTTTCCATTTAGGAGTGATATAAGGAACCTTTAAGGTGGTTTATATAGCAATAATGAGAATACAAAGAGAAGTTGGAAATAAAAAAACAATAATAATAAAGGAAAGAGATATTATGTGAGATCCCACATTGGTCGGGGAGGAGAATGAAGTACCCTTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAGAAACTTTGAGGGGATACCCGAAAAGGAAAGCCCAAAGAAGACAATATCTGTTAGCGATGGATTTGGGCCATTACAAATGGTATCAGAACTAGACACCGGGCGATGTGTCAGCGATGAGGCTAAGCCTCGAAGGGGGTGGACACGAAAAGGTGTGCCAGCAAGGACGCTGGGTCTTGAAAGGGGTGGATTGGGGGGGTCCCACATCGATTGGAGAAGAGAACGAGTACCAGCGAGGACGCTGGGCCCTGAAGAGGGGTGGATTGTGAGATCCTACATTGGTTGGAGAGGAGAACGAAACACTCTTTATAAGGGTGTGGAAACCTCTTCCTAGCAGACGTGCTTTAAAAACCTTGAGCGAAAGCCCAAAAAGGACAATATCTGTTAGCGATGGGTTTGGGCCATTACAAATGGTATCAGAACTAGACACGGGGCGATATGTCAGTGATGATGCTAAGCCTCGAAGGGGGGTGGACACAAGAAGGTGTGCCAGCAAAGACGTTGGGTCTCGAAAGGGGGTGGATTGGGGGGGTCCCATATTGATTAGAGAAGAGAACGAGTGCCAGCGAGTACGCTAGGCCCTGAAGAGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGAGAACGAAACACTCTTTATAAGGGTATGGAAACCTCTCCCTAGCATATGCGTTTTTAAAACCTTGAGGGGAAGTCTGAAAGGGAAAGCCCAAAGAGAACAATATTTGTTAATGGTGGGTTTGGACCGTTGGACTCATTTCAGCTAGGTTCCTAAGACCTACATCCTGGAGGGAGAGACTACCATTGTGAATTTGCCATATTTTCATAAGCTCTCGCCCTCTGAGGAGCGGCATTCTAATTCCTTGTGATGTCTCACATTGGTCGGGAGGAGAACAAACCACCATCTATAATGGTGTGGAAACCTTCTCCTAGTAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGGAAGGGAAAGCTCAAAGAGGAAAATATCTGCTAGCGGTGGATCTGGATCGTTACATTCCTGATGGGCTTGAATGCCACCATTGCTTTCTCTTCCCTTTATTTCTTCTTCGAGTTTTTCCTGTATTTGCTTCTGTCCCTTCTAAAACAAATTTGACCTCTCGTGATCATTGAAGTTCTTTATAGTTCACTCAACTCAACTGATTGGTTAAAATAATGAAGGGGATACGATATATTTGAACACTTTATTTGCTTGTTCTTAATGTCTGACTTATACTTCTAAAAATTGTTGTTTTCTTCAAGGCAGAGCTGGAAAAAAAATTCTTTAAAGATGGGCGAGCTGTTGATTTTGAAGGTTTGATGGGTTCTCTTCCTGTTTTTCTTTTTTAATTCCTTTTTGTTTCCAATTTTATGTCATTCTCAAAGAATAGAAATTACTTTAGAAAGTGTGAATCACACCTCGGTGGGAGAGGGGAACGAAACATTCCTTACAAGGGTGTGGAAACCTCTCCCTAATAGACGCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAAGACAATATCTACTAGCGGTGGGCTTGGGCCGTTAGAAATAGTATCAGAGCCAGACATCAAACGGTGTGCCAGCGAAGACGTTGAACCCCCAAGGGGGGGTAGATTGTGAAATCCCATATCGGTTGGAGGGAACGAAGCATTTCTTATGAAGGTGTGGAAACCTCTCCCTAACAAATGCGTTTTAAAAACCATGCGGGGAAACCCGAAAGAGAAAGTCCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGGGCCGTTACAAACGGTATCAAAGCCAGACACTGGGCAGTGTGCTAGCGAGGGTGAATTGTGAAATTCCACATCAGTTGGAGAGGAAACGAAACATTCCTTATAGGGTGTGAAAACCTCTCCCTAACAGACACGTTTTAAAAACCTTGAGGGGAAGCCCAAAAGGAAAAGCTCAAAGAGGACAATATCTGTTAGCGGTGGGCTTGGGCCGTTATATCGGACTTTTTCTATGTAAATGAAAACATGTGTGTATATCCATGCATGATATCACTATACTCTTGCATAAAAATGACAATGTTGATTAGAATGATTGGTAATGCTTCTTAAACTGATTTACCACAACTTTTAGATTCTTTGAACACGGATTGTCCAATTCAATACTTCGTTTCTGAGGCTTTATCAAATCTTTTTTAAGGTTGAACTTATAGGCTACTGCTAGCAGATATTGTCCTTCTTTTGGCTTTTCCTTTCGAGTTTTTCCTTTTTACAACGTGTCTACTAGGGAGAGGTTTCCACACCCTTTATTAAGGGTGATTTGTTCTTCTCTCCAACCGACGTGGGATCTCACAATCCACCCTCCTTTCGGGTTTTTCTTTTTTACAACGTGTCTACTAGGGAGAGGTTTCCACACCCTTTATTAAGGGTGTTTCGTTCTTCTCTCCAACCGATGTGGGATCTCACAATCCACCCTCCTTTGAGGCCCAGCGTTCTTGCTGGCACACCGCCTCATGTCCACCTCTTTGGGTTATTACATTCTCTTCTTTATCATTATTTATAATGTAAATATTAGCCGGTGTACCGTGTGTTCTTCCGCTTTTAGCTTCAATTAACATCATTTTATCTACCGTGTGTTCTTCCTCTTTTAGCTTCAATTAACATCATTTTATCTATCTTTCCAGGCCTCAAAAACTGTATGATAAGTGGTTACTCCTACCTAGAAGGCATTGAAGAATTGCTAAATGCACTAAAAGAGAAAAACTATGAAATGCATGCCTTCACAAACTATCCTATTTGGTTCGTGAGAAAAGAATCTTCGCATGCCATTTCTTGCGATTAAACGTGTCATTAACTTCTGTGATTTCATTTGGCAGGTACGAAATGATCGAGGAGAAGTTGAAAATCTCGAGATATCTATCGTGGACGTTCTGCTCTTGTAAAAACGGTAACGCTCAAGTTCTTAAAGGCTTTCCTTTTCTTTAAGTTCTCCTCCCTTGCCTTGCCTTGCCTTCTGTTCATTGTCTCACAACTGTGATATAAGCTATGGGGGATTGCTTCATTACCATTCCACTATATTTATCATCACCGTTAAACCATCCTTTTCTCTTTTCTTTCTTTTGTTTATTGCAAAGAAACACAAGTTTTCATATTTAAGAAGTTACAAATGCTAACTACAACGGTCGAAGCCCACCGCTAACAGATATTGTCTTCATCTGTTTGTTAAAATGCCTCACCTAGACCTGCACTTGGTTTCTTCATCTTCAACCCAATGGATGGAGGCTGTTGTGGTTGAACCGTGCCACCCTGACGACCTTTGCTACCTTCTTACAACTCTCAATCCCTCAACAGACTATAAAAGCACAAACCAACGTACCCACTTTGTGAGAATCCCACATTGGTTGGGGAGGAGAACGAAACACCCTTTATAAGGGTGTGGAAACCTTTCCCTAGTAGACGCGTTTTAAAACCTTGAGGGGAAGCTCAAAGAGGACAATATCTGCTAGTGGTGGACTTGGACCGTTACAAATGGTATCAGAGCCAAACACCGGACGATGTGCCAGCGAGGAGGCTGTTCCCCAAAGGGGGTAGACACGAGGCGTTGTGCTAGTAAGGACGCTGGACCCTGAAGGGGGGTGGATTTGGTGGGGGTCTCACATTTATTGGAGAAAAGAACTCGTGCCAGCGAGGACGCTGGGCCCCGAAGGGGGGTGGATAGTGAGAACCCCACATTGGTTGGGGAGGGAACGAAACACCCTTTATAAGGGTGTGGACACCTTTCCCTAGCAAACGCGTTTTAAAGCCTTGAGGAGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGTGGTGGACTTGGGGCGTTACACACTTACTCTTTCTAACATAAGCGTTCACGACTGGGGTATCACAAAGATTTGATTGCTTCTTAACAACTAAGTAAAAATAAACTGAAAAATGTTTAGCGTCTCTTTCTTCTGTGTTCTTTTCTTCCATCCTGTCGTTTTTCAGATATCAGGAAAGTAGCGAAGTTGATATGCCATTGCCTTATAAATTATATTGAATCCTGTTTTTCATATGTTATAGGAAAGAGGAAGCCGGATCCTGATTTCTACTTGGAAGCCCTCAGACATCTTGAAGTTGAGCCAGCTAGCTGTATTTTCATTGATGACAGGTTTGACTTATTTAATGTAAAGAAATTGAAATGGAATTATGATCGGAAGCCTCTATACATTTTAACAATTTGTTCTTATTATATTGATATCAAGTAATATATGAGAAATCTATCCCATATGCATAAGGCCACTTTCCTGTTCTGTCGTTGAATGTTGACGTAGTAGGTGTGAGATCTCACGTTGGCTGGAGTGGAAAACGAAACATTTCTTATAAGGGTGTGGAAAGCTCTCCCTAGTAGACGCGTTTTAAAACCTTGAGGGAAAGCTTAGAAGGGAAAGTTCAAAAAGGACAATGTCTGCTAGAGGTGGGCTTGGGCTATTACAAATGGTATCAGAGCCAGACATCGGGCAGTGTGTAAGTGAGGACGTTGGACCCCCAAGGAGGGGTGGATTGTGAGATCCCACATTAGTTGGAGAGGAGAACGAAACATTTCTTATAAGAGTGTGGAAACCTCTCCCTAGTAGACACATTTGAAAACCTTGAGGGAAAGCCCAAAGAAGACAATATTTACTAGTAGTAGGCTTGGGCTGTTACAAATGGTTATCCAGAGCCAGACACCAGGTGGTGTGTCAACAAGGACGTTGGGTTCCCGAGGAGAGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGAGAACAAAACATTTCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACATGTTTTAAAACCTTGAGGGAAAGCCCAGAAGGGAAAGTTCAAAAAGGACAATATCTGCTAAAGGTGGGCTTGGGCGGTTACAAATGGTATCAGAGCCAGACATCGGGCAGTGTGTCAGTGAGGATGTTGGGCCACCAAAGAGGGGTGGATTGTAAGATCCCACATTGGTTAGAGAGGAGAACAAAACATTTCTTATAAAGGTGTGGAAACTCCCCTTAGTAGCGCATCTTAAACCTTGAGGGAAAGCCCAAAGAAGACAATATTTGCTAGCGTTGGGCTTGGGTTGTTACAAATGGTTATCCAGAGCCAGACACCAGGCGGTGTGTCAACAAGGACGTTGGGTTCCCGAGGATAAATGGATTGTAAGATCCCACATTGGTTGGAGAGGAGAACGAAACATTCCTTATAAGAGTGTGGAAGCCCCTCCCTAGTAGACGCGTTTGAAAATCTTAAGGGGAAACTCGGAAGGAAAAAGCCCAAAGAGGACAATATCTGCTAGCAGTGGACTTGAACTGTTACAGCAGAGTAGTTCATGAAAGAAACGAAAAAATTTAGGCCGATATATTTTATATCTAAACATGACAAGTGGGAAAAACTAGGGTTTGGTCCTTGGGTAGCTTAGCTGAAATTTGGACGTCTAGTTCAACTGGTTCCTTGGGTTAAACTATTGATAAAAGGTTAAACTAGCGGTAGCTTTTGGGTCGAGTGGTGATCTAGCATGATATTAGAGCTGAAGATCCGATGTTCGAACTCCTGTAATCTCATTTATCTTGATTTCCACTTGTTTGACCTTTTATAAATTTTCTAGTCCACGAGTGAGGGAGAAAATCTATCCTAACCCGTCAACTTAAATTTTTGGGTTGAACGGTGATCTAGCACCTTTCGTTTGTTATCGAATGGAGATTTAAAAAACGATACAAACTGCTTTTCATTCTATTGTGCACAAATAGAAGTGAGAATTTAATGTTCTAAACCAAATGGTTATCGAATGAGACCCCTTTCTCATTACAAGTTTACTTGCAGAAAGAAAAACGTAGAAGCAGCGAAAGAAGTCGGCATTGTAGGCTTACATTTCAGAAGTGCAGATCTACTACTACAGGACCTCTGTCGTCTGGGACTCGATATTTCACCCGATATTCATCACCTGAACTCGGCAGCGTCAACATGAACATACCGAACACGTTGCTGAGGTTTGTTCTGTTTCTTTTTCTTGATTTGGAAATGAAAAATGAACTCATCTTTACTATGATTCAATTGATTTTCATAATGGCATGCTGTGTTGAGATTGTTCTAGCTGTGGATTCTTTTGTGGGATTCTGTTTACTGTTCATAATGTTCAAAACATTCATCTGTAATCCATACAATTATGAGCAAATCAATACTCATCTGTTCTTCATTATGTTTTCTTTATGATCGGAAGAAAGGACATGAATATGGAAGCAAGATCAACACTGTCTCTTAAGAATATTACTATGTTTTTTTTTAAGATTTTGTCTACGGATCGTTTGATTTAAGATTTTGTGGATGTTTAAGAATAAAATGTCTGAAAATCCAAGATAATTGTGTTGGATTGTGTACGAGATCTCACAATCCACTCTCGGGCCAGCGTCCTTGCTAGCACACTGTCTGATATTTGGCTCAGATACCATTTTTTGTCGCCTTTATAGTTTTAAAATGTGTCTGCTAGGAAGAGATTTACACACCGTTCTAAAGAATATTTCGTTCCCCTATCCAACCGATATGGGATCTCACTCGTTCCCCTATCCAACCAATATGGGATCTCACATGCACGATCGTTGTAGTATGTACAATGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAATTCAAAGAAAATTTATCTAAATGCAATTTAGAAAATTTGATAAAGGCAATAAATGTATTAATTATGGAAAGAATCTTTATTAAAAAATGTTTATTGGTATAATTTCTATATACTAATAAGGATATTTATTGGGGAAATAAAGATATTTTTTAACTTTGAAATGAAATTAAAGAGTATTTTTAAATTATTTAAAAAAAATTGTATTTTTGTTTTAAAGTTAATTTTTACCTTAATTTATAATTAATATGGGTTTTAAAAAAAATATAAACTAATTATTTAAAGGTAAATATATTAAATTTAGAGGCGAAAATTATATTTTATTTTTAAATCTTTGTCTTAATCTTTAATATTTTATTTTATTTAGTCTTTATAATTTTTAAATATTTAAATTTAGTTTATGTATTTTTAATATATCTTAAAATTATTTTTTTCCCTGGTTTGAAATTATTTTTATTTAAGAAAAGCAAGATGTAAATATTTTTTTTTTAATCAAATTTTCGACTAAATATTTTTAGCAAAATATAATTGTAAGTGCTAATTTTAAAATATAATGAAATTAAACTAAAATGTTATTTTTATTAAAATTATTATTTTATAAAAAGAAAAAGTAATTGGAAAATACGCTCCACTTGAAAATATATATGCTTGAGAATTTCAATTTCTTGCACAAAGCCCACGCTTTGAGTTCCTTGAGTTCTTCCTTTTTTGTCTTTGATTTGGTTGCTAATCTTCTCTGATTACTTGCTTCCATTATTATACCTTCAAGATCTCCAATGGCAGACCCCCGCAACTTGTCTTGCTACAACTGCGGCAGCGTTGGGCTTACAGACGGTGGCGATGGCTTCTTCTACTGTCTCCAGTGTGGTTCCCAGGCCGACGACATCATCGACACCGGTGTCGCCGACGAGGATTTGATTTTAAGAGACCCTGGTGATGCCGGTGGCCCAATCTACTCGCAATCCCACACGCGCCGTCGTAATCCGGCGGTGTTGAAGGTAGAGCCTCTATCTCAGTCTCAACCACAGAGCCTTTTCGGTACTAGTCAATCTGAGTTCTGGGAGAGCCTTCAATTAGAGGGAGACAACGATATTCAAAGGGATGATACCATTGTGATGTCCAATGATGGTGTTGGGCCGATTGGTCCTGAGGATTTCGGATCGGGTGGTGCTTTATCCGGAGCTCCGAGTTTTGAGGAGTATGCTGATGAAGTGAGGATGAGATATGTAATGGGATTGCAGTTGATGATGGAGCTTCAGTGCGAAGTTTTGGTGAAGGAATTCAATGCAAGCCCTGTAATCTGTGGATTGGCGGCGAGCATTTGGTTGAGGTTTGTGACTTCTACACAGGTTTTTGACGAGGATTGGGCCTTTGAGGCCGTTCAGGATTCTGAGAGCCAATGCCTAGGTTTGATCACTCATTACTTCCATGAATAGTTCTTATTCAAATTTAAGTGCCTATGAATCATGTTGATAGAACTGAAACCATTAGCTTTAGATTTCCAATTGGCATATGTTCGTGGATTCTGATAAATGCCTTGAAAACTTAACTCATTATTGTTATTACATTGTCTTTTTTGGCCTTTGATCTTGTTTGCATATTCAAATATCATAGTTCTAAGTGCATATAGCCATAAGTTCATCCGATTATTACAGAGATGAACCTAATCTAGAATATGAACCATAAAAGAAAATACCGACTAAACCGATCACAGGAATACCTATTATCCAAAGAGGAATCCTTCCAGTAGTCTCGGCCATTTGTCCAACTTCCCTCCCCTCCTCAGTTTCTTTGTAATGGGGCATGATTTTGTTTAAGATCTTACAATTTTGCTTGAATAATTGCCTTATTTGTTCCTTTACGTAGTGTTGGTTGAGTTTTCTTCATATATTTCAGTATGTTTGATTGTTTTAATTGGGTCTCTTAGTTTATTTGTACTTTTTGTCATCTTTCTTTTTCGATTTTAGTTGCAAACTGAATGTTCCTTCATTCAACAGATCCTGAAAACATTAGACCTGTTTCAAGTAGGCATAAAGATGAACCCCACAATTTGTATGGTCAGCGGGTAGTAGTTGTGTGGGTTCAATCTTTAAGAAAAAAGATACCATTATCTTGTACACTAGCTGTTTCCTTTTTGGCTTGCCATGTTGCTCGAGAAGCGATTTTGCCAACGGACATAATGAAGTGGTCACTTGAGGGGAAACTTCCATATTTTGCTGCTTTTGTTGACATTGGAGATCGCATTGGGAAAACGTCAAGGGCTTGTCCTATAAGTTTAAAGCATATGTATAGGCCCTCTCGAATTCCCTCGCTGCAGAAGTTGGAATCATTGGCAGCATCGGTAGCTCATACCATAGGGCTCAACCTACCTCCAGTCAACTTTCATTCAATAGCGCGTCGTTATCTCAACAAGCTGGCCCTTCCTGTTGATAAGATTTTGCCTCATGCTTGCCGCATTTATGAGTGGTCAATGCCTCCTGATTTGTGGTTATCAACCAATGAGCTGAGGCTTCCCTCACGTGTTTGTGTAATGTCGATTCTAATTATAGCCATGAGAATTCTCTATAATCTCCATGGTTTTGGAGAATGGGAGAAGAGTTTGTCCGGTAATTGTGCTTCATCTTTCCCACCTAACCAGAAGAGACATTCAAGTCCTGCTAATGATTTCAGTAACGTGCAGGCTAATAGTGAAAATGGACCTGGATTTACTTCACATAATGTGGATAATCTGTCTGTCTCGGCTAAATACTCGCATCTTGACATGCCTGAACTGACTGCTTCAGAGTTCCTTCACAAGATTGAAGCTCGGTATCACGATATTGCTGAGACTTATGGTATGATTTAAGTTTTATTGTATTTTTGAAGTTAGGCCAACCAGAAGCTTTTTTCCTACCTGCTCACTGTATTTATTACTAAATTGTTATTTGCTAACACCAAAATTTTGTTGGCAGAATACTCTAAAAGCTTACCGACCTATCTTCAGCACTGTAAGGATGTCGTCTTTGCTGGTTTAGAGTCTTTGTTTGAGGATCACGAGGAAGAACGGTTGATTGAACAATTTTGGAAGTATTATCAGAATGAAAAGGTAGTGGCTATCATGCTGAAGTCTGGCATTTTTCTTTTCTCTTGAGAATCAAATTCAATTTCGCTGATGATTGTGATTTTTGTGAAATATATAATGAATTTCTTTTGCTTTTTCTTTCCTTTTTCACTAGGATGGGATTTTGATCTTTAGGGTATATAGTGAGAAAACGAACAAAGAAGGGAAAGAGGAGACTAGCCGGGATGTTTTATACTAATGAGGCTATCTCGAATCACTGGATGAGGCCTTTTTTTTTTCTTTTTTTTTATCGCTCTTACCGTGAACCAACCGGTTACTGATAGAGGCTTCTTAGCTAAATTCTTATAGCCTAGGAGTGATTCCGAAAACTAATGTTCGTCCTATTACTCATCTTAGGGTTAAATACTCTTAGCAAACTTTTAGGAGTCATGTGGTGTTGAGACTTTGGTATTTGCAAGTGAACCAACCCCCTTTTTCAACCCCATAAAGACTTGAAAAGCCTGAATGGCACATGTAATCTTTCTCTAGAGAAGAACTCCCTTTTATTACTCTTAGTTGCTATCGTGACACTTTGGGTAGGATTAGCCAAGTATATCATTTCGTCCCTAAAGAAACTCCTTCAAGAATTGTGGTTCTTATGGGCGTTGGGGCATTGGTTTGTGGTAAGCCTAGAGATTTGAGTGGGAGGATGTAGAAAGCGTAGATTTGATTAACCTGAGTTGAGTTTGCGGTGCAAGTTTAGGAAGCTTGTTCTTGGGGTGAGAGGAATAATAGATTCTTTCTGGGGGATACATGAATTCATGCCACTCAAACCCAAACCCTCACCTGAAATATGCTCTTAATGTTTTAAAAGTTCTAGTTCTAATTAGCATTTAAACGGTAGTTAAAAATGAATTGATGTTTCTTTATGATGGAGGTAAGAAATTCAATTCTGAAATATGCTCTTAATGGCTTAAAGCCCACCCGCGAGTAGAAATTGTCCTCTTTGGACTTTCTCTTTCGGATTTTCCCTCAAGGTTTTTAAAATGTGTCTGTCATGGAAAGGTTTTCACACCCTTATAAAGAATGTTTCATTCTCCTCTCCAATCAATGTAGGATCTCACAATTCACCCCCTTTGTGTCCTCGCTGGCACTCGTTCCATTCTCCAATCGATGTGGGACCCCCCAATCCACCACCTCCCTTCCGGGCACAGCATCCTTGCTGGCACATCGTCAGGTGTCTGGCTCTGATATCATTTGTAACAGCCCAAGCCCACCGCTAGCAGATATTGTCCTATTTGGGATCTCCTTTCGAGCTTCCCCTCAAGGTTTCTAAAACGCTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTCTCTAACCGACGTGGGATCTCACATTATAACTTGGTCATTTTTCTTCACGATGTTCTTCTTTGGAATGAGTCAAAGGTTGCTGCTCAATGTAGAGTTCTTATGAGAAAATTGTGACTTATGCTCTAATCTAACTTTGCATTAGCACCTTCATTTTGATGTTTAAACTTGAGTTTGAGAAGTAAGATGTAGAAGTGTTGCTAGACTTGAGCTACAATAGGTTATCCAAGTAGATCATGAGTTCAAACTTTATAGCGACCTAAGATATTTATCCTATGAGTCTTCCGACGACTAAACATTATAGGGGTCGAGAAATTGTCTCCTGAAATTCATGAATGCGTGCATAAGTATCGGAAAAAGTCGAGTTAGAACTTATAGTTCTTTGCAACATCACTTGCTTTTGTTGCTATGCCACATGGGATTTCATGTCTGTTAACCAAATTTATGTATCAGTGTTTATTTGGAAAGCATAAATCCTAACCACTGAAAAGAAATTGTTACAGGATCAAGAACAAACAGAAGATATGGATCAAAATGCAGCTTCCAATCAAAAGAGATTGAGGGAAGCTCCGAATGATCGATCATCCAACAAAGACAAGAAACGCAGGAGCGAAGACCGTGTTAGTGGCGAATCATCCGATAACCGAACTGAGTCGAATAATTCGCAGCAAAGTCATTCATCAAAAAGTTCCGAAAATGTAGATGATGAACTATCCTCTGAAGACAAAGCTTCAACACTAACTTCCAAAGACGAAGCGATCAGACGACTGAAACTCGATATGGAAGAAAATAGATTCTGCTACATTCCTCCAAGGGTTTACCCAAAGAGATTCGGTTACCTTCACTACTCGAGGAAGATCGACGAAGGTGCGCTAACTTACGCTGCTCATGCCGATTACTACTTATTGCTTCGAGCTTGTGCTAGAGCTGCACAAGTTAGTACTAGGATCATGCACATTGGTGTGCTGAGTCTTGAGAAAAGATTGTCTTGGTTAGAATCTAGAATCAATCACTCCCTTCATCTAACACCCTCTAGTGTTTCTTGTGAGTTTTGCAGTGATGTTATGCCTGATCATGCCACGCTCGACTCTATCGATCTCTCAGATTTGAATATTTAAGTGATCAGAGATATATTCGAACGAGTTAAACGATAGATTATATAACAATGTTGGTTCTTAGGATCGTATGGAATAAGATTATCAATTGTCAGGTTCAAGATCGTGTAGAAATAAGACACGATCAGAATCTACAACAAAGCCATTGTAGGGTCGGAGCATGTTGAATCTAGAAGCGGTTACCAACGGAATTTATAAGGGTATTCTGTCGAGTGGGGAAGTAGGGTCTTGTGTCGAGTGGATAACTCTTCTAGATAATAATGAACGGTTATCATTGAAGATTTTTTTCGTTTTTTTAAAAGAGTTTCATTTGTCA

mRNA sequence

CGAGAGCAATGGTTAGTGGCTGCGGCCATTTTTGGAGCTTATATCAATTTTAATGGCTTCTCTCTGGAACCCACCTGTTGCTTCCTTCTCCCCAGTCAGACCCACCTTGAATCCATCAAAAATGGCGTCCAATTTCAACCATACCCTTCGTCGCAGAGGCAACGATGCTGGCATTGGCGATGGCAAAGGCGTCTCGTCTTCTCTTTCGATGGCGGCTGGTTGGAGCTCTGATGGTGGCGATAAGAGCACTAGGAAGCTTCCTGTTCTGCTGTTTGATATCATGGGTACCATTGTTCGTGATCCATTCTATGAAGATGTTCCCGCCTTTTTCAGAATGCCCATGGAGGAACTACTTGAACTCAAACACCCAACCGTGTGGCTAGAATTTGAGAAGGGTTTGATTGATGAGGTATAGCTGGAAAAAAAATTCTTTAAAGATGGGCGAGCTGTTGATTTTGAAGGCCTCAAAAACTGTATGATAAGTGGTTACTCCTACCTAGAAGGCATTGAAGAATTGCTAAATGCACTAAAAGAGAAAAACTATGAAATGCATGCCTTCACAAACTATCCTATTTGGTACGAAATGATCGAGGAGAAGTTGAAAATCTCGAGATATCTATCGTGGACGTTCTGCTCTTGTAAAAACGGAAAGAGGAAGCCGGATCCTGATTTCTACTTGGAAGCCCTCAGACATCTTGAAGTTGAGCCAGCTAGCTGTATTTTCATTGATGACAGGTTTGACTTATTTAATAAAGAAAAACGTAGAAGCAGCGAAAGAAGTCGGCATTGTAGGCTTACATTTCAGAAGTGCAGATCTACTACTACAGGACCTCTGTCGTCTGGGACTCGATATTTCACCCGATATTCATCACCTGAACTCGGCAGCGTCAACATGAACATACCGAACACGTTGCTGAGATCTCCAATGGCAGACCCCCGCAACTTGTCTTGCTACAACTGCGGCAGCGTTGGGCTTACAGACGGTGGCGATGGCTTCTTCTACTGTCTCCAGTGTGGTTCCCAGGCCGACGACATCATCGACACCGGTGTCGCCGACGAGGATTTGATTTTAAGAGACCCTGGTGATGCCGGTGGCCCAATCTACTCGCAATCCCACACGCGCCGTCGTAATCCGGCGGTGTTGAAGGTAGAGCCTCTATCTCAGTCTCAACCACAGAGCCTTTTCGGTACTAGTCAATCTGAGTTCTGGGAGAGCCTTCAATTAGAGGGAGACAACGATATTCAAAGGGATGATACCATTGTGATGTCCAATGATGGTGTTGGGCCGATTGGTCCTGAGGATTTCGGATCGGGTGGTGCTTTATCCGGAGCTCCGAGTTTTGAGGAGTATGCTGATGAAGTGAGGATGAGATATGTAATGGGATTGCAGTTGATGATGGAGCTTCAGTGCGAAGTTTTGGTGAAGGAATTCAATGCAAGCCCTGTAATCTGTGGATTGGCGGCGAGCATTTGGTTGAGGTTTGTGACTTCTACACAGGTTTTTGACGAGGATTGGGCCTTTGAGGCCGTTCAGGATTCTGAGAGCCAATGCCTAGATCCTGAAAACATTAGACCTGTTTCAAGTAGGCATAAAGATGAACCCCACAATTTGTATGGTCAGCGGGTAGTAGTTGTGTGGGTTCAATCTTTAAGAAAAAAGATACCATTATCTTGTACACTAGCTGTTTCCTTTTTGGCTTGCCATGTTGCTCGAGAAGCGATTTTGCCAACGGACATAATGAAGTGGTCACTTGAGGGGAAACTTCCATATTTTGCTGCTTTTGTTGACATTGGAGATCGCATTGGGAAAACGTCAAGGGCTTGTCCTATAAGTTTAAAGCATATGTATAGGCCCTCTCGAATTCCCTCGCTGCAGAAGTTGGAATCATTGGCAGCATCGGTAGCTCATACCATAGGGCTCAACCTACCTCCAGTCAACTTTCATTCAATAGCGCGTCGTTATCTCAACAAGCTGGCCCTTCCTGTTGATAAGATTTTGCCTCATGCTTGCCGCATTTATGAGTGGTCAATGCCTCCTGATTTGTGGTTATCAACCAATGAGCTGAGGCTTCCCTCACGTGTTTGTGTAATGTCGATTCTAATTATAGCCATGAGAATTCTCTATAATCTCCATGGTTTTGGAGAATGGGAGAAGAGTTTGTCCGGTAATTGTGCTTCATCTTTCCCACCTAACCAGAAGAGACATTCAAGTCCTGCTAATGATTTCAGTAACGTGCAGGCTAATAGTGAAAATGGACCTGGATTTACTTCACATAATGTGGATAATCTGTCTGTCTCGGCTAAATACTCGCATCTTGACATGCCTGAACTGACTGCTTCAGAGTTCCTTCACAAGATTGAAGCTCGGTATCACGATATTGCTGAGACTTATGAATACTCTAAAAGCTTACCGACCTATCTTCAGCACTGTAAGGATGTCGTCTTTGCTGGTTTAGAGTCTTTGTTTGAGGATCACGAGGAAGAACGGTTGATTGAACAATTTTGGAAGTATTATCAGAATGAAAAGGATGGGATTTTGATCTTTAGGGTATATAAGAAGAACTCCCTTTTATTACTCTTAGTTGCTATCGTGACACTTTGGGTAGGATTAGCCAAGTATATCATTTCGTCCCTAAAGAAACTCCTTCAAGAATTGTGGTTCTTATGGGCGTTGGGGCATTGGTTTGTGGATCAAGAACAAACAGAAGATATGGATCAAAATGCAGCTTCCAATCAAAAGAGATTGAGGGAAGCTCCGAATGATCGATCATCCAACAAAGACAAGAAACGCAGGAGCGAAGACCGTGTTAGTGGCGAATCATCCGATAACCGAACTGAGTCGAATAATTCGCAGCAAAGTCATTCATCAAAAAGTTCCGAAAATGTAGATGATGAACTATCCTCTGAAGACAAAGCTTCAACACTAACTTCCAAAGACGAAGCGATCAGACGACTGAAACTCGATATGGAAGAAAATAGATTCTGCTACATTCCTCCAAGGGTTTACCCAAAGAGATTCGGTTACCTTCACTACTCGAGGAAGATCGACGAAGGTGCGCTAACTTACGCTGCTCATGCCGATTACTACTTATTGCTTCGAGCTTGTGCTAGAGCTGCACAAGTTAGTACTAGGATCATGCACATTGGTGTGCTGAGTCTTGAGAAAAGATTGTCTTGGTTAGAATCTAGAATCAATCACTCCCTTCATCTAACACCCTCTAGTGTTTCTTGTGAGTTTTGCAGTGATGTTATGCCTGATCATGCCACGCTCGACTCTATCGATCTCTCAGATTTGAATATTTAAGTGATCAGAGATATATTCGAACGAGTTAAACGATAGATTATATAACAATGTTGGTTCTTAGGATCGTATGGAATAAGATTATCAATTGTCAGGTTCAAGATCGTGTAGAAATAAGACACGATCAGAATCTACAACAAAGCCATTGTAGGGTCGGAGCATGTTGAATCTAGAAGCGGTTACCAACGGAATTTATAAGGGTATTCTGTCGAGTGGGGAAGTAGGGTCTTGTGTCGAGTGGATAACTCTTCTAGATAATAATGAACGGTTATCATTGAAGATTTTTTTCGTTTTTTTAAAAGAGTTTCATTTGTCA

Coding sequence (CDS)

ATGATAAGTGGTTACTCCTACCTAGAAGGCATTGAAGAATTGCTAAATGCACTAAAAGAGAAAAACTATGAAATGCATGCCTTCACAAACTATCCTATTTGGTACGAAATGATCGAGGAGAAGTTGAAAATCTCGAGATATCTATCGTGGACGTTCTGCTCTTGTAAAAACGGAAAGAGGAAGCCGGATCCTGATTTCTACTTGGAAGCCCTCAGACATCTTGAAGTTGAGCCAGCTAGCTGTATTTTCATTGATGACAGGTTTGACTTATTTAATAAAGAAAAACGTAGAAGCAGCGAAAGAAGTCGGCATTGTAGGCTTACATTTCAGAAGTGCAGATCTACTACTACAGGACCTCTGTCGTCTGGGACTCGATATTTCACCCGATATTCATCACCTGAACTCGGCAGCGTCAACATGAACATACCGAACACGTTGCTGAGATCTCCAATGGCAGACCCCCGCAACTTGTCTTGCTACAACTGCGGCAGCGTTGGGCTTACAGACGGTGGCGATGGCTTCTTCTACTGTCTCCAGTGTGGTTCCCAGGCCGACGACATCATCGACACCGGTGTCGCCGACGAGGATTTGATTTTAAGAGACCCTGGTGATGCCGGTGGCCCAATCTACTCGCAATCCCACACGCGCCGTCGTAATCCGGCGGTGTTGAAGGTAGAGCCTCTATCTCAGTCTCAACCACAGAGCCTTTTCGGTACTAGTCAATCTGAGTTCTGGGAGAGCCTTCAATTAGAGGGAGACAACGATATTCAAAGGGATGATACCATTGTGATGTCCAATGATGGTGTTGGGCCGATTGGTCCTGAGGATTTCGGATCGGGTGGTGCTTTATCCGGAGCTCCGAGTTTTGAGGAGTATGCTGATGAAGTGAGGATGAGATATGTAATGGGATTGCAGTTGATGATGGAGCTTCAGTGCGAAGTTTTGGTGAAGGAATTCAATGCAAGCCCTGTAATCTGTGGATTGGCGGCGAGCATTTGGTTGAGGTTTGTGACTTCTACACAGGTTTTTGACGAGGATTGGGCCTTTGAGGCCGTTCAGGATTCTGAGAGCCAATGCCTAGATCCTGAAAACATTAGACCTGTTTCAAGTAGGCATAAAGATGAACCCCACAATTTGTATGGTCAGCGGGTAGTAGTTGTGTGGGTTCAATCTTTAAGAAAAAAGATACCATTATCTTGTACACTAGCTGTTTCCTTTTTGGCTTGCCATGTTGCTCGAGAAGCGATTTTGCCAACGGACATAATGAAGTGGTCACTTGAGGGGAAACTTCCATATTTTGCTGCTTTTGTTGACATTGGAGATCGCATTGGGAAAACGTCAAGGGCTTGTCCTATAAGTTTAAAGCATATGTATAGGCCCTCTCGAATTCCCTCGCTGCAGAAGTTGGAATCATTGGCAGCATCGGTAGCTCATACCATAGGGCTCAACCTACCTCCAGTCAACTTTCATTCAATAGCGCGTCGTTATCTCAACAAGCTGGCCCTTCCTGTTGATAAGATTTTGCCTCATGCTTGCCGCATTTATGAGTGGTCAATGCCTCCTGATTTGTGGTTATCAACCAATGAGCTGAGGCTTCCCTCACGTGTTTGTGTAATGTCGATTCTAATTATAGCCATGAGAATTCTCTATAATCTCCATGGTTTTGGAGAATGGGAGAAGAGTTTGTCCGGTAATTGTGCTTCATCTTTCCCACCTAACCAGAAGAGACATTCAAGTCCTGCTAATGATTTCAGTAACGTGCAGGCTAATAGTGAAAATGGACCTGGATTTACTTCACATAATGTGGATAATCTGTCTGTCTCGGCTAAATACTCGCATCTTGACATGCCTGAACTGACTGCTTCAGAGTTCCTTCACAAGATTGAAGCTCGGTATCACGATATTGCTGAGACTTATGAATACTCTAAAAGCTTACCGACCTATCTTCAGCACTGTAAGGATGTCGTCTTTGCTGGTTTAGAGTCTTTGTTTGAGGATCACGAGGAAGAACGGTTGATTGAACAATTTTGGAAGTATTATCAGAATGAAAAGGATGGGATTTTGATCTTTAGGGTATATAAGAAGAACTCCCTTTTATTACTCTTAGTTGCTATCGTGACACTTTGGGTAGGATTAGCCAAGTATATCATTTCGTCCCTAAAGAAACTCCTTCAAGAATTGTGGTTCTTATGGGCGTTGGGGCATTGGTTTGTGGATCAAGAACAAACAGAAGATATGGATCAAAATGCAGCTTCCAATCAAAAGAGATTGAGGGAAGCTCCGAATGATCGATCATCCAACAAAGACAAGAAACGCAGGAGCGAAGACCGTGTTAGTGGCGAATCATCCGATAACCGAACTGAGTCGAATAATTCGCAGCAAAGTCATTCATCAAAAAGTTCCGAAAATGTAGATGATGAACTATCCTCTGAAGACAAAGCTTCAACACTAACTTCCAAAGACGAAGCGATCAGACGACTGAAACTCGATATGGAAGAAAATAGATTCTGCTACATTCCTCCAAGGGTTTACCCAAAGAGATTCGGTTACCTTCACTACTCGAGGAAGATCGACGAAGGTGCGCTAACTTACGCTGCTCATGCCGATTACTACTTATTGCTTCGAGCTTGTGCTAGAGCTGCACAAGTTAGTACTAGGATCATGCACATTGGTGTGCTGAGTCTTGAGAAAAGATTGTCTTGGTTAGAATCTAGAATCAATCACTCCCTTCATCTAACACCCTCTAGTGTTTCTTGTGAGTTTTGCAGTGATGTTATGCCTGATCATGCCACGCTCGACTCTATCGATCTCTCAGATTTGAATATTTAA

Protein sequence

MISGYSYLEGIEELLNALKEKNYEMHAFTNYPIWYEMIEEKLKISRYLSWTFCSCKNGKRKPDPDFYLEALRHLEVEPASCIFIDDRFDLFNKEKRRSSERSRHCRLTFQKCRSTTTGPLSSGTRYFTRYSSPELGSVNMNIPNTLLRSPMADPRNLSCYNCGSVGLTDGGDGFFYCLQCGSQADDIIDTGVADEDLILRDPGDAGGPIYSQSHTRRRNPAVLKVEPLSQSQPQSLFGTSQSEFWESLQLEGDNDIQRDDTIVMSNDGVGPIGPEDFGSGGALSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASPVICGLAASIWLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVSSRHKDEPHNLYGQRVVVVWVQSLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRIGKTSRACPISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALPVDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSGNCASSFPPNQKRHSSPANDFSNVQANSENGPGFTSHNVDNLSVSAKYSHLDMPELTASEFLHKIEARYHDIAETYEYSKSLPTYLQHCKDVVFAGLESLFEDHEEERLIEQFWKYYQNEKDGILIFRVYKKNSLLLLLVAIVTLWVGLAKYIISSLKKLLQELWFLWALGHWFVDQEQTEDMDQNAASNQKRLREAPNDRSSNKDKKRRSEDRVSGESSDNRTESNNSQQSHSSKSSENVDDELSSEDKASTLTSKDEAIRRLKLDMEENRFCYIPPRVYPKRFGYLHYSRKIDEGALTYAAHADYYLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRINHSLHLTPSSVSCEFCSDVMPDHATLDSIDLSDLNI

Homology

[Close]

BLAST of CmoCh12G009490 vs. ExPASy Swiss-Prot
Match: Q5XVF0 (TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Arabidopsis thaliana OX=3702 GN=MEE12 PE=1 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 3.3e-122
Identity = 293/780 (37.56%), Postives = 414/780 (53.08%), Query Frame = 0


Query: 159 CYNCGSVGLTDGGDGFFYCLQCGSQADDIIDTGVADEDLILRDPGDAGGPIYSQSHTRRR 218
           C  C +    +  DG++YC +CG Q +++I TGV D DLI  + G   G +Y+  H RR 
Sbjct: 3   CTECENDAFDEEDDGYYYCQRCGVQVENLIQTGVDDGDLI-GEGGGTQGALYNPKH-RRT 62

Query: 219 NPAVLKVEPLSQSQPQSLFGTSQ-SEFWESLQLEGDN-----DIQRDDTIVMSNDGVGPI 278
            P     +P++ SQP+    TS+ S+F    + E  N     +++R     +  +   P 
Sbjct: 63  EP-----QPITPSQPRFTDDTSRYSQFKSQFESENGNKELPREVKRAPDSYVDKE---PT 122

Query: 279 GPEDFGSGGALSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASPVICGLAASI 338
            P DF      +   S+E Y DE R RYV    +M+  QC+ LV +FN +P+I GL   I
Sbjct: 123 EPVDFA-----AETLSYENYYDEARDRYVKAFLMMITYQCDALVDKFNVTPLIIGLVGPI 182

Query: 339 WLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVS--SRHKDEPHNLYGQRVVVVWVQ 398
            LR+V  + V+ +DWA  A++DSE Q  D E ++      RHK EP N+ G+R V +W  
Sbjct: 183 SLRYVALSGVYHKDWANNAIRDSEHQSEDGE-VKDAKRLKRHKAEPRNIDGKRAVTIWFG 242

Query: 399 SLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRIGKTSRAC 458
            L+K +PLS +L +SFLACH A   +LPTDI++W+ EGKLPY + F+DI +++G+ S AC
Sbjct: 243 ILKKTMPLSSSLVISFLACHQAGAPVLPTDIVRWAREGKLPYLSCFLDIREQMGERSAAC 302

Query: 459 PISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALPVDKILPH 518
           P+ +  M RP ++ S Q LE+ A+ +A TIGL LPPVNF+ IA  Y+ +L++P DKIL  
Sbjct: 303 PVKVSIMARPFQVISAQMLEARASVIADTIGLPLPPVNFYGIASNYIKQLSIPEDKILDL 362

Query: 519 ACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSGNCASSF 578
           A  I  WS+PP+L+LSTNE +LPSRVCVMSILI+A+R+LYN++G G WE+SL        
Sbjct: 363 ARLIQNWSLPPELYLSTNEQKLPSRVCVMSILIVAIRMLYNINGLGVWERSLG------- 422

Query: 579 PPNQKRHSSPANDFSNVQANSENGPGFTSHNVDNLSVSAKYSHLDMPELTASEFLHKIEA 638
                              N+ +G   T     N   + K +  D  EL     L  +EA
Sbjct: 423 -----------------FVNASDGDSET-----NSGTAEKATEFDTQEL-----LKNLEA 482

Query: 639 RYHDI-AETYEYSKSLPTYLQHCKDVVFAGLESLFEDHEEERLIEQFWKYYQNEKDGILI 698
           +YH++ AET E  K L +YL   K+  FAGLE    D +  R+++  W  Y  ++D    
Sbjct: 483 KYHEVAAETLESEKDLVSYLSLGKNEFFAGLEEDSPD-DTYRIVDNLWNGYPKDED---- 542

Query: 699 FRVYKKNSLLLLLVAIVTLWVGLAKYIISSLKKLLQELWFLWALGHWFVDQEQTEDMDQN 758
                                      I  L K                   +  D D +
Sbjct: 543 ---------------------------IECLPK-------------------RGRDWDDD 602

Query: 759 AASNQKRLREAPNDRSSNKDKKRRSEDRVSGESSDNRTESNNSQQSHSSKSSENVD---D 818
            + NQ  L                          D+R    N+  S SS+ +E+V    D
Sbjct: 603 VSLNQLSL-------------------------YDSRFSDGNNPCSSSSRRNESVSIGLD 656

Query: 819 ELSSEDKASTLTS--KDEAIRRLKLDMEENRFCYIPPRVYPKRFGYLHYSRKIDEGALTY 878
             SSE + S+     K+ AI+RL  DM ++ FCYIPPRV  KR  YL Y RK ++GAL Y
Sbjct: 663 LSSSEHRESSSPEKLKEIAIKRLITDMGDDLFCYIPPRVKVKRLDYLQYVRKKEDGALIY 656

Query: 879 AAHADYYLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRINHSLHLTPSSVSCEFCSD 925
           AAHADYY+LLR CA+ A++  R MH GVLS E+RL+W+E RI+  LHLT   ++C+ C D
Sbjct: 723 AAHADYYILLRVCAKVAEIDVRNMHRGVLSFERRLAWIEKRIDQVLHLTRPLMTCKHCCD 656

[Close]

BLAST of CmoCh12G009490 vs. ExPASy Swiss-Prot
Match: B8AX23 (TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19584 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.2e-94
Identity = 229/648 (35.34%), Postives = 328/648 (50.62%), Query Frame = 0


Query: 271 PIGPEDFGSGGALSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASPVICGLAA 330
           P  P DF +G    G P  E+ A  VR RYV GLQ++++ Q E LV+      +   LA 
Sbjct: 106 PSEPRDFATGANAWGNP--EDVAARVRWRYVRGLQVILQRQLEALVERHRVGSLAASLAG 165

Query: 331 SIWLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVSSRHKDEPHNLYG------QRV 390
           +IWLR+V +++VFDE W  + +  + S       +    S  KD+   L G         
Sbjct: 166 TIWLRWVAASKVFDEMWVHKMLAIAAS-------VEEGHSASKDKQSELEGDAQKSQSSY 225

Query: 391 VVVWVQSLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRIG 450
             ++++SLR  +P+  TLAV FLACHVARE ILPTDI +W++EGKLPY AAF  +   +G
Sbjct: 226 EFLFLRSLRMMLPVYSTLAVCFLACHVARETILPTDICRWAMEGKLPYVAAFTQVDKLLG 285

Query: 451 KTSRACPISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALPV 510
            +   CP+S + ++RP+R+    +LE+ A S+A  IGL LP VNF+ IA+R+L +L+LP+
Sbjct: 286 SSLNDCPLSSRQLFRPTRVIGAWQLEAAAGSIAQKIGLLLPSVNFYLIAQRFLKELSLPI 345

Query: 511 DKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEK-SLS 570
           +KILPHACRIYEW+MP +LWLS+N  R+PSRVCVM+ILI+A+R+LY ++G G WE  + +
Sbjct: 346 EKILPHACRIYEWAMPAELWLSSNPGRVPSRVCVMAILIVALRVLYGINGQGIWESIAQT 405

Query: 571 GNCASSFPPNQKRHSSPANDFSNVQANSENGPGFTSHNVDNLSVSAKYSHLDMPELTASE 630
            N   S P     HS        ++ +S N                        E  A E
Sbjct: 406 ENAVGSDPEASAPHS--------IEPDSNNS----------------------EEFDARE 465

Query: 631 FLHKIEARYHDIAETYEYSKSLPTYLQHCKDVVFAGLESLFEDHEEERLIEQFWKYYQNE 690
            L  + A Y  I   ++YSK + +YL++CKDVVF G+       EEE LI+ FW      
Sbjct: 466 LLCTLAASYDKIDVGHDYSKEVHSYLKYCKDVVFTGMTFSL---EEEHLIDIFWD----- 525

Query: 691 KDGILIFRVYKKNSLLLLLVAIVTLWVGLAKYIISSLKKLLQELWFLWALGHWFVDQEQT 750
                   +YK   ++LL                                          
Sbjct: 526 --------MYKGKEVMLL------------------------------------------ 585

Query: 751 EDMDQNAASNQKRLREAPNDRSSNKDKKRRSEDRVSGESSDNRTESNNSQQSHSSKSSEN 810
              D+NA   Q++L      R++N   KR  + R                          
Sbjct: 586 ---DENAKLCQEKL------RTTNGVNKRCRDGRF------------------------- 616

Query: 811 VDDELSSEDKASTLTSKDEAIRRLKLDMEENRFCYIPPRVYPKRFGYLHYSRKIDEGALT 870
                 ++ K  +    + A++ +K  MEEN FCY+ PR      GYL Y+R+   G+L 
Sbjct: 646 ------ADTKCCSTPLGNCALQSIKSKMEENGFCYVSPRKRLVSDGYLLYTRRESSGSLI 616

Query: 871 YAAHADYYLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRINHSLH 912
           Y AHADYY+LLR  A+ A+V  R++H  VL LE+RL W+E R+  SL+
Sbjct: 706 YVAHADYYILLRPFAKLAEVDVRVLHSSVLKLERRLGWIEERVGRSLN 616

[Close]

BLAST of CmoCh12G009490 vs. ExPASy Swiss-Prot
Match: Q5W770 (TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0352700 PE=3 SV=2)

HSP 1 Score: 348.6 bits (893), Expect = 2.2e-94
Identity = 229/648 (35.34%), Postives = 328/648 (50.62%), Query Frame = 0


Query: 271 PIGPEDFGSGGALSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASPVICGLAA 330
           P  P DF +G    G P  E+ A  VR RYV GLQ++++ Q E LV+      +   LA 
Sbjct: 106 PSEPRDFATGANAWGNP--EDVAARVRWRYVRGLQVILQRQLEALVERHRVGSLAASLAG 165

Query: 331 SIWLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVSSRHKDEPHNLYG------QRV 390
           +IWLR+V +++VFDE W  + +  + S       +    S  KD+   L G         
Sbjct: 166 TIWLRWVAASKVFDEMWVHKMLAIAAS-------VEEGHSASKDKQSELEGDAQKSQSSY 225

Query: 391 VVVWVQSLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRIG 450
             ++++SLR  +P+  TLAV FLACHVARE ILPTDI +W++EGKLPY AAF  +   +G
Sbjct: 226 EFLFLRSLRMMLPVYSTLAVCFLACHVARETILPTDICRWAMEGKLPYVAAFTQVDKLLG 285

Query: 451 KTSRACPISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALPV 510
            +   CP+S + ++RP+R+    +LE+ A S+A  IGL LP VNF+ IA+R+L +L+LP+
Sbjct: 286 SSLNDCPLSSRQLFRPTRVIGAWQLEAAAGSIAQKIGLLLPSVNFYLIAQRFLKELSLPI 345

Query: 511 DKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEK-SLS 570
           +KILPHACRIYEW+MP +LWLS+N  R+PSRVCVM+ILI+A+R+LY ++G G WE  + +
Sbjct: 346 EKILPHACRIYEWAMPAELWLSSNPGRVPSRVCVMAILIVALRVLYGINGQGIWESIAQT 405

Query: 571 GNCASSFPPNQKRHSSPANDFSNVQANSENGPGFTSHNVDNLSVSAKYSHLDMPELTASE 630
            N   S P     HS        ++ +S N                        E  A E
Sbjct: 406 ENAVGSDPEASAPHS--------IEPDSNNS----------------------EEFDARE 465

Query: 631 FLHKIEARYHDIAETYEYSKSLPTYLQHCKDVVFAGLESLFEDHEEERLIEQFWKYYQNE 690
            L  + A Y  I   ++YSK + +YL++CKDVVF G+       EEE LI+ FW      
Sbjct: 466 LLCTLAASYDKINVGHDYSKEVHSYLKYCKDVVFTGMTFSL---EEEHLIDIFWD----- 525

Query: 691 KDGILIFRVYKKNSLLLLLVAIVTLWVGLAKYIISSLKKLLQELWFLWALGHWFVDQEQT 750
                   +YK   ++LL                                          
Sbjct: 526 --------MYKGKEVMLL------------------------------------------ 585

Query: 751 EDMDQNAASNQKRLREAPNDRSSNKDKKRRSEDRVSGESSDNRTESNNSQQSHSSKSSEN 810
              D+NA   Q++L      R++N   KR  + R                          
Sbjct: 586 ---DENAKLCQEKL------RTTNGVNKRCRDGRF------------------------- 616

Query: 811 VDDELSSEDKASTLTSKDEAIRRLKLDMEENRFCYIPPRVYPKRFGYLHYSRKIDEGALT 870
                 ++ K  +    + A++ +K  MEEN FCY+ PR      GYL Y+R+   G+L 
Sbjct: 646 ------ADTKCCSTPLGNCALQSIKSKMEENGFCYVSPRKRLVSDGYLLYTRRESSGSLI 616

Query: 871 YAAHADYYLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRINHSLH 912
           Y AHADYY+LLR  A+ A+V  R++H  VL LE+RL W+E R+  SL+
Sbjct: 706 YVAHADYYILLRPFAKLAEVDVRVLHSSVLKLERRLGWIEERVGRSLN 616

[Close]

BLAST of CmoCh12G009490 vs. ExPASy Swiss-Prot
Match: Q84VZ1 (Flavin mononucleotide hydrolase 1, chloroplatic OS=Arabidopsis thaliana OX=3702 GN=FHY1 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 5.4e-32
Identity = 61/87 (70.11%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1   MISGYSYLEGIEELLNALKEKNYEMHAFTNYPIWYEMIEEKLKISRYLSWTFCSCKNGKR 60
           M SGYSYL+G++ELL  L   ++E+HAFTNYPIWY +IE+KLK+S YLSWTFCSC  GKR
Sbjct: 120 MRSGYSYLDGMQELLQTLAADDFEIHAFTNYPIWYNIIEDKLKLSAYLSWTFCSCIAGKR 179

Query: 61  KPDPDFYLEALRHLEVEPASCIFIDDR 88
           KPDP+FYLE + HL VEP  CIFIDDR
Sbjct: 180 KPDPEFYLEVVGHLGVEPCDCIFIDDR 206

[Close]

BLAST of CmoCh12G009490 vs. ExPASy TrEMBL
Match: A0A6J1FAY0 (TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Cucurbita moschata OX=3662 GN=LOC111443985 PE=3 SV=1)

HSP 1 Score: 1440.6 bits (3728), Expect = 0.0e+00
Identity = 738/792 (93.18%), Postives = 738/792 (93.18%), Query Frame = 0


Query: 151 MADPRNLSCYNCGSVGLTDGGDGFFYCLQCGSQADDIIDTGVADEDLILRDPGDAGGPIY 210
           MADPRNLSCYNCGSVGLTDGGDGFFYCLQCGSQADDIIDTGVADEDLILRDPGDAGGPIY
Sbjct: 1   MADPRNLSCYNCGSVGLTDGGDGFFYCLQCGSQADDIIDTGVADEDLILRDPGDAGGPIY 60

Query: 211 SQSHTRRRNPAVLKVEPLSQSQPQSLFGTSQSEFWESLQLEGDNDIQRDDTIVMSNDGVG 270
           SQSHTRRRNPAVLKVEPLSQSQPQSLFGTSQSEFWESLQLEGDNDIQRDDTIVMSNDGVG
Sbjct: 61  SQSHTRRRNPAVLKVEPLSQSQPQSLFGTSQSEFWESLQLEGDNDIQRDDTIVMSNDGVG 120

Query: 271 PIGPEDFGSGGALSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASPVICGLAA 330
           PIGPEDFGSGGALSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASPVICGLAA
Sbjct: 121 PIGPEDFGSGGALSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASPVICGLAA 180

Query: 331 SIWLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVSSRHKDEPHNLYGQRVVVVWVQ 390
           SIWLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVSSRHKDEPHNLYGQRVVVVWVQ
Sbjct: 181 SIWLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVSSRHKDEPHNLYGQRVVVVWVQ 240

Query: 391 SLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRIGKTSRAC 450
           SLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRIGKTSRAC
Sbjct: 241 SLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRIGKTSRAC 300

Query: 451 PISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALPVDKILPH 510
           PISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALPVDKILPH
Sbjct: 301 PISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALPVDKILPH 360

Query: 511 ACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSGNCASSF 570
           ACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSGNCASSF
Sbjct: 361 ACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSGNCASSF 420

Query: 571 PPNQKRHSSPANDFSNVQANSENGPGFTSHNVDNLSVSAKYSHLDMPELTASEFLHKIEA 630
           PPNQKRHSSPANDFSNVQANSENGPGFTSHNVDNLSVSAKYSHLDMPELTASEFLHKIEA
Sbjct: 421 PPNQKRHSSPANDFSNVQANSENGPGFTSHNVDNLSVSAKYSHLDMPELTASEFLHKIEA 480

Query: 631 RYHDIAETYEYSKSLPTYLQHCKDVVFAGLESLFEDHEEERLIEQFWKYYQNEKDGILIF 690
           RYHDIAETYEYSKSLPTYLQHCKDVVFAGLESLFEDHEEERLIEQFWKYYQNEK      
Sbjct: 481 RYHDIAETYEYSKSLPTYLQHCKDVVFAGLESLFEDHEEERLIEQFWKYYQNEK------ 540

Query: 691 RVYKKNSLLLLLVAIVTLWVGLAKYIISSLKKLLQELWFLWALGHWFVDQEQTEDMDQNA 750
                                                           DQEQTEDMDQNA
Sbjct: 541 ------------------------------------------------DQEQTEDMDQNA 600

Query: 751 ASNQKRLREAPNDRSSNKDKKRRSEDRVSGESSDNRTESNNSQQSHSSKSSENVDDELSS 810
           ASNQKRLREAPNDRSSNKDKKRRSEDRVSGESSDNRTESNNSQQSHSSKSSENVDDELSS
Sbjct: 601 ASNQKRLREAPNDRSSNKDKKRRSEDRVSGESSDNRTESNNSQQSHSSKSSENVDDELSS 660

Query: 811 EDKASTLTSKDEAIRRLKLDMEENRFCYIPPRVYPKRFGYLHYSRKIDEGALTYAAHADY 870
           EDKASTLTSKDEAIRRLKLDMEENRFCYIPPRVYPKRFGYLHYSRKIDEGALTYAAHADY
Sbjct: 661 EDKASTLTSKDEAIRRLKLDMEENRFCYIPPRVYPKRFGYLHYSRKIDEGALTYAAHADY 720

Query: 871 YLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRINHSLHLTPSSVSCEFCSDVMPDHA 930
           YLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRINHSLHLTPSSVSCEFCSDVMPDHA
Sbjct: 721 YLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRINHSLHLTPSSVSCEFCSDVMPDHA 738

Query: 931 TLDSIDLSDLNI 943
           TLDSIDLSDLNI
Sbjct: 781 TLDSIDLSDLNI 738

[Close]

BLAST of CmoCh12G009490 vs. ExPASy TrEMBL
Match: A0A6J1HNT6 (TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Cucurbita maxima OX=3661 GN=LOC111465368 PE=3 SV=1)

HSP 1 Score: 1417.1 bits (3667), Expect = 0.0e+00
Identity = 724/792 (91.41%), Postives = 733/792 (92.55%), Query Frame = 0


Query: 151 MADPRNLSCYNCGSVGLTDGGDGFFYCLQCGSQADDIIDTGVADEDLILRDPGDAGGPIY 210
           MADPRNLSCYNCGSVGLTDGGDGFFYCLQCGSQADDIIDTGVADEDLILRDPGDAGGPIY
Sbjct: 1   MADPRNLSCYNCGSVGLTDGGDGFFYCLQCGSQADDIIDTGVADEDLILRDPGDAGGPIY 60

Query: 211 SQSHTRRRNPAVLKVEPLSQSQPQSLFGTSQSEFWESLQLEGDNDIQRDDTIVMSNDGVG 270
           SQSHTRRRNPAVLKVEP+SQSQPQSLFGTSQSEFWESLQLEGDND+QRDD IVMSNDGVG
Sbjct: 61  SQSHTRRRNPAVLKVEPISQSQPQSLFGTSQSEFWESLQLEGDNDMQRDDAIVMSNDGVG 120

Query: 271 PIGPEDFGSGGALSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASPVICGLAA 330
           PIGPEDFGSGG LSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASPVICGLAA
Sbjct: 121 PIGPEDFGSGGVLSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASPVICGLAA 180

Query: 331 SIWLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVSSRHKDEPHNLYGQRVVVVWVQ 390
           SIWLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVSSRHKDEPHNLYGQRVVVVWVQ
Sbjct: 181 SIWLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVSSRHKDEPHNLYGQRVVVVWVQ 240

Query: 391 SLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRIGKTSRAC 450
           SLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRIG+TSRAC
Sbjct: 241 SLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRIGQTSRAC 300

Query: 451 PISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALPVDKILPH 510
           PISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALPVDKILPH
Sbjct: 301 PISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALPVDKILPH 360

Query: 511 ACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSGNCASSF 570
           ACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSGNCASSF
Sbjct: 361 ACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSGNCASSF 420

Query: 571 PPNQKRHSSPANDFSNVQANSENGPGFTSHNVDNLSVSAKYSHLDMPELTASEFLHKIEA 630
           PPNQKRHSSPAN+FSNVQANSENGPGFTSHNVDNLSVSAK+SHL MPELTASEFLHKIEA
Sbjct: 421 PPNQKRHSSPANNFSNVQANSENGPGFTSHNVDNLSVSAKFSHLHMPELTASEFLHKIEA 480

Query: 631 RYHDIAETYEYSKSLPTYLQHCKDVVFAGLESLFEDHEEERLIEQFWKYYQNEKDGILIF 690
           RYH+IAETYEYSKSLP YLQHCKDVVFAGLESLFEDHEEERLIEQFWKYYQNEK      
Sbjct: 481 RYHEIAETYEYSKSLPIYLQHCKDVVFAGLESLFEDHEEERLIEQFWKYYQNEK------ 540

Query: 691 RVYKKNSLLLLLVAIVTLWVGLAKYIISSLKKLLQELWFLWALGHWFVDQEQTEDMDQNA 750
                                                           DQEQTED+DQNA
Sbjct: 541 ------------------------------------------------DQEQTEDVDQNA 600

Query: 751 ASNQKRLREAPNDRSSNKDKKRRSEDRVSGESSDNRTESNNSQQSHSSKSSENVDDELSS 810
           ASNQKRLREAPNDRSSNKDKKRRSEDR+SGESSDNRTESNNSQQSHSSKSSENVDDELSS
Sbjct: 601 ASNQKRLREAPNDRSSNKDKKRRSEDRISGESSDNRTESNNSQQSHSSKSSENVDDELSS 660

Query: 811 EDKASTLTSKDEAIRRLKLDMEENRFCYIPPRVYPKRFGYLHYSRKIDEGALTYAAHADY 870
           EDKAST TSKDEAIRRLKLDMEENRFCYIPPRVYPKRFGYLHYSRKIDEGALTYAAHADY
Sbjct: 661 EDKASTPTSKDEAIRRLKLDMEENRFCYIPPRVYPKRFGYLHYSRKIDEGALTYAAHADY 720

Query: 871 YLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRINHSLHLTPSSVSCEFCSDVMPDHA 930
           YLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRI+HSLHLTPSSVSCEFCSDVMPDHA
Sbjct: 721 YLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRIHHSLHLTPSSVSCEFCSDVMPDHA 738

Query: 931 TLDSIDLSDLNI 943
           TLDSIDLSDLNI
Sbjct: 781 TLDSIDLSDLNI 738

[Close]

BLAST of CmoCh12G009490 vs. ExPASy TrEMBL
Match: A0A6J1D8G5 (TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Momordica charantia OX=3673 GN=LOC111018221 PE=3 SV=1)

HSP 1 Score: 1186.4 bits (3068), Expect = 0.0e+00
Identity = 612/794 (77.08%), Postives = 669/794 (84.26%), Query Frame = 0


Query: 151 MADPRNLSCYNCGSVGLTDGGDGFFYCLQCGSQADDIIDTGVADEDLILRDPGDAGGPIY 210
           MADPRNLSCYNCGSVGLTDG DGFFYCLQCGSQADDIIDTGVADEDL+LRD G+ GGPIY
Sbjct: 1   MADPRNLSCYNCGSVGLTDGFDGFFYCLQCGSQADDIIDTGVADEDLLLRDAGERGGPIY 60

Query: 211 SQSHTRRRNPAVLKVEPLSQSQPQSLFGTSQSEFWESLQLEGDNDIQRDDTIVMSNDGVG 270
           SQSHTRRR PAVLKVEPLSQSQPQ+LFG + S+FW+SL L+     +  D + + +DGVG
Sbjct: 61  SQSHTRRRIPAVLKVEPLSQSQPQALFGAAHSQFWDSLNLK-----EEGDAVALLDDGVG 120

Query: 271 PIGPEDFGSGGALSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASPVICGLAA 330
           P GPEDFGSGG LSGAPSFEEYA+EVRMRYVMGLQLM+ELQCE LVKEF ASPVICGLAA
Sbjct: 121 PTGPEDFGSGGVLSGAPSFEEYAEEVRMRYVMGLQLMVELQCEALVKEFKASPVICGLAA 180

Query: 331 SIWLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVSSRHKDEPHNLYGQRVVVVWVQ 390
           SIWLRFVT+T+VFDEDWAFEAVQDSESQC DP NIRPVSSRHK EPHNL+GQRVVVVWV+
Sbjct: 181 SIWLRFVTATRVFDEDWAFEAVQDSESQCQDPGNIRPVSSRHKAEPHNLFGQRVVVVWVK 240

Query: 391 SLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRIGKTSRAC 450
           SLRKKIPLSCTLA+SFLACHVAREAILPTDIMKWSLEGKLPYFAAF+DI +RIG+TSRAC
Sbjct: 241 SLRKKIPLSCTLAISFLACHVAREAILPTDIMKWSLEGKLPYFAAFIDIENRIGQTSRAC 300

Query: 451 PISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALPVDKILPH 510
           PIS KHMYRPSRIP LQKLESLAAS+AHTIGLNLPPVNFH IA RYL+KL+LPV+KIL H
Sbjct: 301 PISSKHMYRPSRIPPLQKLESLAASIAHTIGLNLPPVNFHLIACRYLDKLSLPVEKILHH 360

Query: 511 ACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSGNCASSF 570
           ACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILY+LHGFGEWEKSLS NCASSF
Sbjct: 361 ACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYDLHGFGEWEKSLSINCASSF 420

Query: 571 PPNQKRHSSPANDFSNVQANSENGPGFTSHNVDNLSVSAKYSHLDMPELTASEFLHKIEA 630
           PPNQK HSSPA++FSN QA+ ENG GFTSHNVDNLS S +  +L  PELT +EFL KIEA
Sbjct: 421 PPNQKTHSSPAHNFSNTQADRENGSGFTSHNVDNLSASVENLNLHKPELTTTEFLSKIEA 480

Query: 631 RYHDIAETYEYSKSLPTYLQHCKDVVFAGLESLFEDHEEERLIEQFWKYYQNEKDGILIF 690
           RY++IAETYEYS+ LPTYLQHCKDVVFAGLESLFEDHEEE++IEQFW YYQN+K+     
Sbjct: 481 RYYEIAETYEYSRDLPTYLQHCKDVVFAGLESLFEDHEEEKMIEQFWNYYQNQKE----- 540

Query: 691 RVYKKNSLLLLLVAIVTLWVGLAKYIISSLKKLLQELWFLWALGHWFVDQEQTEDMDQNA 750
                                                           D EQTED+DQNA
Sbjct: 541 ------------------------------------------------DSEQTEDVDQNA 600

Query: 751 ASNQKRLREAPNDRSSNKDKKRRSEDRVSGESSDNRT-ESNNSQQSHSSKSSENVD-DEL 810
           ASNQKRLRE   DR SN+ KK R E+ +S ESSDN+T  SNNSQQSHSSKSSE  D +EL
Sbjct: 601 ASNQKRLREGSADRLSNESKKPRGEEGISRESSDNKTSNSNNSQQSHSSKSSEGGDEEEL 660

Query: 811 SSEDKASTLTSKDEAIRRLKLDMEENRFCYIPPRVYPKRFGYLHYSRKIDEGALTYAAHA 870
           SS+DKA   TS D +++RLKLDMEE RFCYIPPRV PKRFGYLHYSRKID GALTYAAHA
Sbjct: 661 SSKDKAPAQTSIDASVKRLKLDMEEKRFCYIPPRVNPKRFGYLHYSRKIDGGALTYAAHA 720

Query: 871 DYYLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRINHSLHLTPSSVSCEFCSDVMPD 930
           DYY+LLRACARAAQ+  RIMHIGVLSLEKRLSWLE+RI+HSLHLTPS VSCEFCSDV+P+
Sbjct: 721 DYYILLRACARAAQIDIRIMHIGVLSLEKRLSWLEARIHHSLHLTPSGVSCEFCSDVVPE 736

Query: 931 HATLDSIDLSDLNI 943
           +AT+DSI LSDLNI
Sbjct: 781 NATVDSIGLSDLNI 736

[Close]

BLAST of CmoCh12G009490 vs. ExPASy TrEMBL
Match: A0A1S3B4G3 (TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Cucumis melo OX=3656 GN=LOC103485898 PE=3 SV=1)

HSP 1 Score: 1128.6 bits (2918), Expect = 0.0e+00
Identity = 603/801 (75.28%), Postives = 657/801 (82.02%), Query Frame = 0


Query: 151 MADPRNLSCYNCGSVGLTDGGDGFFYCLQCGSQADDIIDTGVADEDLILRDPGDAGGPIY 210
           MADP NLSCYNCGS+GLTDG DGFFYCLQCGSQADDIIDTGVA+EDL LRD G +GGPIY
Sbjct: 1   MADPSNLSCYNCGSIGLTDGFDGFFYCLQCGSQADDIIDTGVAEEDLALRDVGKSGGPIY 60

Query: 211 SQSHTRRRNPAVLKVEPLSQSQPQSLFGTSQSEFWESLQLEGD---NDIQRDDTIVMSND 270
           SQSHTRRRNP VLKVEPLSQSQP  LFGTSQSEFW+SL L+ D   N  Q DD IVM ND
Sbjct: 61  SQSHTRRRNPTVLKVEPLSQSQP--LFGTSQSEFWDSLHLKEDPSGNVGQNDDGIVMLND 120

Query: 271 GVGPIGPEDFGSGGALSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASPVICG 330
           GVGP GPEDFGSG  LSG PSFEEYADEVRMRYVMGLQL+MELQCEVLVKEF A+P+ICG
Sbjct: 121 GVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATPIICG 180

Query: 331 LAASIWLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVSSRHKDEPHNLYGQRVVVV 390
           LAASIWLRFVT+T+VFDEDWAF+ VQ+SESQCLD E IR V S HKDEPHN YGQRVVV+
Sbjct: 181 LAASIWLRFVTATRVFDEDWAFQTVQESESQCLDTERIRRVCSSHKDEPHNFYGQRVVVL 240

Query: 391 WVQSLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRIGKTS 450
           WV+SLRKKIPL CTLAVSFLACHVAREAILPTDI+KWSLEGKLPY+AAFVDI  RIGKTS
Sbjct: 241 WVKSLRKKIPLFCTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRIGKTS 300

Query: 451 RACPISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALPVDKI 510
           RACPIS K M+RPSRI SLQKLESLAAS+AHTIGLNLPPVNFHSIA RYLNKLALPVDKI
Sbjct: 301 RACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALPVDKI 360

Query: 511 LPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSGNCA 570
           LPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMR+LYNLHGFGEWEKSLS NCA
Sbjct: 361 LPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRVLYNLHGFGEWEKSLSVNCA 420

Query: 571 SSFPPNQKRHSSPANDFSNVQANSENGPGFTSHNVDNLSVSAKYSHLDMPELTASEFLHK 630
           S FPPNQK HSSPAN+FSN+QA+SEN PGFTSH++DN SVS      + P LT +EFL K
Sbjct: 421 SYFPPNQKTHSSPANNFSNMQADSENRPGFTSHDLDNPSVSP-----ENPHLTTTEFLRK 480

Query: 631 IEARYHDIAETYEYSKSLPTYLQHCKDVVFAGLESLF-EDHEEERLIEQFWKYYQNEKDG 690
           IEARYH+IAETYEYSK LP+YLQ+CKDVVFAG ESLF +DHEE+++IE+ W YYQNEK  
Sbjct: 481 IEARYHEIAETYEYSKDLPSYLQYCKDVVFAGSESLFIDDHEEQKMIEKLWNYYQNEK-- 540

Query: 691 ILIFRVYKKNSLLLLLVAIVTLWVGLAKYIISSLKKLLQELWFLWALGHWFVDQEQTEDM 750
                                                               D +QTED+
Sbjct: 541 ----------------------------------------------------DHDQTEDV 600

Query: 751 DQNAASNQKRLREAPNDRSSNKDKK-RRSEDRVSGESSDNRTESNNSQQSHSSKSSENV- 810
           DQN ASN KRLRE  NDR S++ KK +  ED +SGESS+NRT S +S+QSHSSKS EN  
Sbjct: 601 DQNVASNLKRLREGSNDRLSSESKKVKGEEDCISGESSNNRTGSIDSRQSHSSKSLENSD 660

Query: 811 --DDELSSEDK-ASTLTSKDEAIRRLKLDMEENRFCYIPPRVYPKRFGYLHYSRKIDEGA 870
             DDE SSEDK AS+LTS +EAIR+LKLDMEE RFCYIPPR  PKRFGYLHYSRKIDEGA
Sbjct: 661 DDDDEQSSEDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRANPKRFGYLHYSRKIDEGA 720

Query: 871 LTYAAHADYYLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRINHSLHLTPSSVSCEF 930
           LTYAAHADYY+LLRACARAAQV  RIMHIGVLSLEKRLSWLE RI+ +L LTPSSV+CEF
Sbjct: 721 LTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKTLRLTPSSVTCEF 737

Query: 931 CSDVMPDHATLDSIDLSDLNI 943
           CSDV P+H  +DS+ LSDL+I
Sbjct: 781 CSDV-PNH--IDSVGLSDLDI 737

[Close]

BLAST of CmoCh12G009490 vs. ExPASy TrEMBL
Match: A0A5D3C954 (TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001970 PE=3 SV=1)

HSP 1 Score: 1128.6 bits (2918), Expect = 0.0e+00
Identity = 603/801 (75.28%), Postives = 657/801 (82.02%), Query Frame = 0


Query: 151 MADPRNLSCYNCGSVGLTDGGDGFFYCLQCGSQADDIIDTGVADEDLILRDPGDAGGPIY 210
           MADP NLSCYNCGS+GLTDG DGFFYCLQCGSQADDIIDTGVA+EDL LRD G +GGPIY
Sbjct: 1   MADPSNLSCYNCGSIGLTDGFDGFFYCLQCGSQADDIIDTGVAEEDLALRDVGKSGGPIY 60

Query: 211 SQSHTRRRNPAVLKVEPLSQSQPQSLFGTSQSEFWESLQLEGD---NDIQRDDTIVMSND 270
           SQSHTRRRNP VLKVEPLSQSQP  LFGTSQSEFW+SL L+ D   N  Q DD IVM ND
Sbjct: 61  SQSHTRRRNPTVLKVEPLSQSQP--LFGTSQSEFWDSLHLKEDPSGNVGQNDDGIVMLND 120

Query: 271 GVGPIGPEDFGSGGALSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASPVICG 330
           GVGP GPEDFGSG  LSG PSFEEYADEVRMRYVMGLQL+MELQCEVLVKEF A+P+ICG
Sbjct: 121 GVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATPIICG 180

Query: 331 LAASIWLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVSSRHKDEPHNLYGQRVVVV 390
           LAASIWLRFVT+T+VFDEDWAF+ VQ+SESQCLD E IR V S HKDEPHN YGQRVVV+
Sbjct: 181 LAASIWLRFVTATRVFDEDWAFQTVQESESQCLDTERIRRVCSSHKDEPHNFYGQRVVVL 240

Query: 391 WVQSLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRIGKTS 450
           WV+SLRKKIPL CTLAVSFLACHVAREAILPTDI+KWSLEGKLPY+AAFVDI  RIGKTS
Sbjct: 241 WVKSLRKKIPLFCTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRIGKTS 300

Query: 451 RACPISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALPVDKI 510
           RACPIS K M+RPSRI SLQKLESLAAS+AHTIGLNLPPVNFHSIA RYLNKLALPVDKI
Sbjct: 301 RACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALPVDKI 360

Query: 511 LPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSGNCA 570
           LPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMR+LYNLHGFGEWEKSLS NCA
Sbjct: 361 LPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRVLYNLHGFGEWEKSLSVNCA 420

Query: 571 SSFPPNQKRHSSPANDFSNVQANSENGPGFTSHNVDNLSVSAKYSHLDMPELTASEFLHK 630
           S FPPNQK HSSPAN+FSN+QA+SEN PGFTSH++DN SVS      + P LT +EFL K
Sbjct: 421 SYFPPNQKTHSSPANNFSNMQADSENRPGFTSHDLDNPSVSP-----ENPHLTTTEFLRK 480

Query: 631 IEARYHDIAETYEYSKSLPTYLQHCKDVVFAGLESLF-EDHEEERLIEQFWKYYQNEKDG 690
           IEARYH+IAETYEYSK LP+YLQ+CKDVVFAG ESLF +DHEE+++IE+ W YYQNEK  
Sbjct: 481 IEARYHEIAETYEYSKDLPSYLQYCKDVVFAGSESLFIDDHEEQKMIEKLWNYYQNEK-- 540

Query: 691 ILIFRVYKKNSLLLLLVAIVTLWVGLAKYIISSLKKLLQELWFLWALGHWFVDQEQTEDM 750
                                                               D +QTED+
Sbjct: 541 ----------------------------------------------------DHDQTEDV 600

Query: 751 DQNAASNQKRLREAPNDRSSNKDKK-RRSEDRVSGESSDNRTESNNSQQSHSSKSSENV- 810
           DQN ASN KRLRE  NDR S++ KK +  ED +SGESS+NRT S +S+QSHSSKS EN  
Sbjct: 601 DQNVASNLKRLREGSNDRLSSESKKVKGEEDCISGESSNNRTGSIDSRQSHSSKSLENSD 660

Query: 811 --DDELSSEDK-ASTLTSKDEAIRRLKLDMEENRFCYIPPRVYPKRFGYLHYSRKIDEGA 870
             DDE SSEDK AS+LTS +EAIR+LKLDMEE RFCYIPPR  PKRFGYLHYSRKIDEGA
Sbjct: 661 DDDDEQSSEDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRANPKRFGYLHYSRKIDEGA 720

Query: 871 LTYAAHADYYLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRINHSLHLTPSSVSCEF 930
           LTYAAHADYY+LLRACARAAQV  RIMHIGVLSLEKRLSWLE RI+ +L LTPSSV+CEF
Sbjct: 721 LTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKTLRLTPSSVTCEF 737

Query: 931 CSDVMPDHATLDSIDLSDLNI 943
           CSDV P+H  +DS+ LSDL+I
Sbjct: 781 CSDV-PNH--IDSVGLSDLDI 737

[Close]

BLAST of CmoCh12G009490 vs. TAIR 10
Match: AT2G02955.1 (maternal effect embryo arrest 12 )

HSP 1 Score: 441.0 bits (1133), Expect = 2.3e-123
Identity = 293/780 (37.56%), Postives = 414/780 (53.08%), Query Frame = 0


Query: 159 CYNCGSVGLTDGGDGFFYCLQCGSQADDIIDTGVADEDLILRDPGDAGGPIYSQSHTRRR 218
           C  C +    +  DG++YC +CG Q +++I TGV D DLI  + G   G +Y+  H RR 
Sbjct: 3   CTECENDAFDEEDDGYYYCQRCGVQVENLIQTGVDDGDLI-GEGGGTQGALYNPKH-RRT 62

Query: 219 NPAVLKVEPLSQSQPQSLFGTSQ-SEFWESLQLEGDN-----DIQRDDTIVMSNDGVGPI 278
            P     +P++ SQP+    TS+ S+F    + E  N     +++R     +  +   P 
Sbjct: 63  EP-----QPITPSQPRFTDDTSRYSQFKSQFESENGNKELPREVKRAPDSYVDKE---PT 122

Query: 279 GPEDFGSGGALSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASPVICGLAASI 338
            P DF      +   S+E Y DE R RYV    +M+  QC+ LV +FN +P+I GL   I
Sbjct: 123 EPVDFA-----AETLSYENYYDEARDRYVKAFLMMITYQCDALVDKFNVTPLIIGLVGPI 182

Query: 339 WLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVS--SRHKDEPHNLYGQRVVVVWVQ 398
            LR+V  + V+ +DWA  A++DSE Q  D E ++      RHK EP N+ G+R V +W  
Sbjct: 183 SLRYVALSGVYHKDWANNAIRDSEHQSEDGE-VKDAKRLKRHKAEPRNIDGKRAVTIWFG 242

Query: 399 SLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRIGKTSRAC 458
            L+K +PLS +L +SFLACH A   +LPTDI++W+ EGKLPY + F+DI +++G+ S AC
Sbjct: 243 ILKKTMPLSSSLVISFLACHQAGAPVLPTDIVRWAREGKLPYLSCFLDIREQMGERSAAC 302

Query: 459 PISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALPVDKILPH 518
           P+ +  M RP ++ S Q LE+ A+ +A TIGL LPPVNF+ IA  Y+ +L++P DKIL  
Sbjct: 303 PVKVSIMARPFQVISAQMLEARASVIADTIGLPLPPVNFYGIASNYIKQLSIPEDKILDL 362

Query: 519 ACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSGNCASSF 578
           A  I  WS+PP+L+LSTNE +LPSRVCVMSILI+A+R+LYN++G G WE+SL        
Sbjct: 363 ARLIQNWSLPPELYLSTNEQKLPSRVCVMSILIVAIRMLYNINGLGVWERSLG------- 422

Query: 579 PPNQKRHSSPANDFSNVQANSENGPGFTSHNVDNLSVSAKYSHLDMPELTASEFLHKIEA 638
                              N+ +G   T     N   + K +  D  EL     L  +EA
Sbjct: 423 -----------------FVNASDGDSET-----NSGTAEKATEFDTQEL-----LKNLEA 482

Query: 639 RYHDI-AETYEYSKSLPTYLQHCKDVVFAGLESLFEDHEEERLIEQFWKYYQNEKDGILI 698
           +YH++ AET E  K L +YL   K+  FAGLE    D +  R+++  W  Y  ++D    
Sbjct: 483 KYHEVAAETLESEKDLVSYLSLGKNEFFAGLEEDSPD-DTYRIVDNLWNGYPKDED---- 542

Query: 699 FRVYKKNSLLLLLVAIVTLWVGLAKYIISSLKKLLQELWFLWALGHWFVDQEQTEDMDQN 758
                                      I  L K                   +  D D +
Sbjct: 543 ---------------------------IECLPK-------------------RGRDWDDD 602

Query: 759 AASNQKRLREAPNDRSSNKDKKRRSEDRVSGESSDNRTESNNSQQSHSSKSSENVD---D 818
            + NQ  L                          D+R    N+  S SS+ +E+V    D
Sbjct: 603 VSLNQLSL-------------------------YDSRFSDGNNPCSSSSRRNESVSIGLD 656

Query: 819 ELSSEDKASTLTS--KDEAIRRLKLDMEENRFCYIPPRVYPKRFGYLHYSRKIDEGALTY 878
             SSE + S+     K+ AI+RL  DM ++ FCYIPPRV  KR  YL Y RK ++GAL Y
Sbjct: 663 LSSSEHRESSSPEKLKEIAIKRLITDMGDDLFCYIPPRVKVKRLDYLQYVRKKEDGALIY 656

Query: 879 AAHADYYLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRINHSLHLTPSSVSCEFCSD 925
           AAHADYY+LLR CA+ A++  R MH GVLS E+RL+W+E RI+  LHLT   ++C+ C D
Sbjct: 723 AAHADYYILLRVCAKVAEIDVRNMHRGVLSFERRLAWIEKRIDQVLHLTRPLMTCKHCCD 656

[Close]

BLAST of CmoCh12G009490 vs. TAIR 10
Match: AT1G79790.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein )

HSP 1 Score: 141.4 bits (355), Expect = 3.8e-33
Identity = 61/87 (70.11%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1   MISGYSYLEGIEELLNALKEKNYEMHAFTNYPIWYEMIEEKLKISRYLSWTFCSCKNGKR 60
           M SGYSYL+G++ELL  L   ++E+HAFTNYPIWY +IE+KLK+S YLSWTFCSC  GKR
Sbjct: 120 MRSGYSYLDGMQELLQTLAADDFEIHAFTNYPIWYNIIEDKLKLSAYLSWTFCSCIAGKR 179

Query: 61  KPDPDFYLEALRHLEVEPASCIFIDDR 88
           KPDP+FYLE + HL VEP  CIFIDDR
Sbjct: 180 KPDPEFYLEVVGHLGVEPCDCIFIDDR 206

[Close]

BLAST of CmoCh12G009490 vs. TAIR 10
Match: AT1G79790.2 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein )

HSP 1 Score: 127.5 bits (319), Expect = 5.7e-29
Identity = 61/112 (54.46%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 1   MISGYSYLEGIEELLNALKEKNYEMHAFTNYPIW-------------------------Y 60
           M SGYSYL+G++ELL  L   ++E+HAFTNYPIW                         Y
Sbjct: 48  MRSGYSYLDGMQELLQTLAADDFEIHAFTNYPIWFPSLAFHSLKRSFMSLCLLLSCFHRY 107

Query: 61  EMIEEKLKISRYLSWTFCSCKNGKRKPDPDFYLEALRHLEVEPASCIFIDDR 88
            +IE+KLK+S YLSWTFCSC  GKRKPDP+FYLE + HL VEP  CIFIDDR
Sbjct: 108 NIIEDKLKLSAYLSWTFCSCIAGKRKPDPEFYLEVVGHLGVEPCDCIFIDDR 159

The following BLAST results are available for this feature:

BLAST of CmoCh12G009490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XVF0	3.3e-122	37.56	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Arabido...	[more]
B8AX23	2.2e-94	35.34	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Oryza s...	[more]
Q5W770	2.2e-94	35.34	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Oryza s...	[more]
Q84VZ1	5.4e-32	70.11	Flavin mononucleotide hydrolase 1, chloroplatic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmoCh12G009490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FAY0	0.0e+00	93.18	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Cucurbi...	[more]
A0A6J1HNT6	0.0e+00	91.41	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Cucurbi...	[more]
A0A6J1D8G5	0.0e+00	77.08	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Momordi...	[more]
A0A1S3B4G3	0.0e+00	75.28	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Cucumis...	[more]
A0A5D3C954	0.0e+00	75.28	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Cucumis...	[more]

BLAST of CmoCh12G009490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02955.1	2.3e-123	37.56	maternal effect embryo arrest 12	[more]
AT1G79790.1	3.8e-33	70.11	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	[more]
AT1G79790.2	5.7e-29	54.46	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041492	Haloacid dehalogenase-like hydrolase	PFAM	PF13419	HAD_2	coord: 7..87 e-value: 6.1E-10 score: 39.5
IPR023214	HAD superfamily	GENE3D	3.40.50.1000		coord: 1..89 e-value: 2.6E-20 score: 75.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 569..595
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 800..817
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 757..783
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 745..817
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 784..799
IPR033599	RNA polymerase I transcription initiation factor TAF1B/Rrn7	PANTHER	PTHR31576	TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B	coord: 769..924 coord: 155..685
IPR036412	HAD-like superfamily	SUPERFAMILY	56784	HAD-like	coord: 5..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G009490.1	CmoCh12G009490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042790	nucleolar large rRNA transcription by RNA polymerase I
biological_process	GO:0001188	RNA polymerase I preinitiation complex assembly
biological_process	GO:0006360	transcription by RNA polymerase I
cellular_component	GO:0070860	RNA polymerase I core factor complex
cellular_component	GO:0005668	RNA polymerase transcription factor SL1 complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0001164	RNA polymerase I core promoter sequence-specific DNA binding