CmoCh12G008750 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G008750
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S23-1
LocationCmo_Chr12: 7972348 .. 7976398 (+)
RNA-Seq ExpressionCmoCh12G008750
SyntenyCmoCh12G008750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAATATTTAGTTCATCAGCGCAGCCCCAAATTCTGCGCCAGTATCTTCTTCTTCGCTAGTCACATTACGCGTTCGATTTCAGTCCTCTCTGTAATTCCGAAGCTCAGAGTCTGGGACCGGCGGCGGCAGAAGCACCGGCTACGCCCAAATTGCATTCGCCGTTGTTCTTCAGGTATTATATCGCTTCGTTTATCTTTCTTTTTATTTCAATTTCTCTGTCTTATGATTCATTACTGGTAAACTCTCTATGTGAGTGCTTGCAATTTGTTACAAACCCGAAATATTGAACCCAGAAAACCGAATCGAAACCCTTTGATTTAATCCCTTGCCTCCTTTATTCATTTTGGTGATTGGCGATTCTGGCATTTGATCCTAACCGTAGCCGCCTCTGTGCTCATTCCTAGGCCTTTGTCTTTGGGTTCTTCGTCTTCCAGTCCTCTGTGATTAGGTTCTTAAACAAAACTTAACTTGTGTTCTTCTGTTCTCAGTAACGAATTCAACCTCGAACATGATTGTGTTGCTCATTTAGTTCATAACGTTCATATTCTCATTTATTTTGGTTATTAACTTTCATTTAGTTTATAACCATTTTGTTTCGTATTCTCATTTATTTGGTTTATGTATAAGAATTAGTATTGTTATGTTTATAGCCATTGCTTTGAGGCATGGAGTCAAGTGAAATCATTGTCATTTTGTATTTGCTTAGAAGCAAATGGGAGGAACTTTTGTTGAGAGACTTGTAAATACTTCGGTTATAGTGATTGGCTACCCACCTGTGGATGTAGTAGAATTTCTTCTCTCCGAACCACATAAATTTTTGTGTCTCTTTGTTTAATTTCTGTTTGTGAGTGTGTGAGTGCAATTGATCTTGCTTCCGCTTCTGCCACAACTATTGGGTATCATAACATTTTTTGTTGTGGCATTACAACACAACAAGTGGTATTAGAGCATTGAAGGTTGTGGCATTACGGCACAATAAATTGCATCTAAAATGGATCGATTAACATTTCATATATAGGATAAGAGAAAGAAGAAATCTTGTATTGGTTGGCTTGTTGGTTCATTTTCCCCCTGCTCAGGTTCCATCAGGCTTCAATTTTTCATATCATTTGTTTAAAGATTCAAACCAGAATCACAATCAACTTTGAACTCTTTCTAATCTCCTGGCTAAGCCTAAGCCTCTGCATTCTAGCCTGTTGGATAAGTAGCCTAAAGCTCTAGATGTGTTTGTGTTCTCAAATCAAACTGACCAAAAACTCCTTTTATTGGGTTGATTTTTGAATATGCTCTTGTACATTACTTAATTTTTCTGATTGAAAGCTCAGCTTCTCATCCGAAAAAACTTTGACGCCCAAAAAGTCCCATGTCCGGACTAACCGCCAGCGATTTTCAAAAAGTCTTTTCCCGTTTTTTTGGGGGAGTAGAGAAGTCAAAGAAAAGTTTCAAAACAAAGGAATAGCACAGAGCTCATACTGTATGATAATCCAACGCTTAACTCCACCTTATGATGAATACAGATTTGACTTCCTTCCCTTCTTCAGCTACCTATGAAACTCTTTCTTCAACAGCGTCGGACGCCTGACTTGGTCAAATTTGTGCTGAATACAGCAGGTGTGTGCATGAAGCCGGGGGGGTTATTACCCCCTAACCGGTCCATGCCTGATTGAAAATTGGATATTACCTCTAGTGAGGTCCATACTCATTTTTTATTCTACTGACTGAGTTATGGTTTCTGCAAAGATTTTAAAATCAATTTATGAAGTTATCAATTTTGATTTGGTCCAGGAATTTAGCAGATGGCGCTTAGACGGTTCTTTGGTTTTTCTGATGGTGAGCTAATGAGATCGGACGCTAAACCGTGTTCACAGTTGATGAAACAGACTGCTGGATTATGTACTGTTGGAGGAGGACTTGCATTCTGGATTCTTTGCAGATTACACTATGGTCTGTTAAGTATTCTTCTCATCTGGTTTTAAATGCATAATCAAGTTGCATGTTTTTCCCTTTTCCAGTTCATCTCTTAGTGAAGATTAATGAGTTTCCTTATTGATTCTAATCTATTTAGTTACCATATAAATGGAAGCTATAGTATTCTGAATCTGAAGTTCGAATAGGTATCAGGTTAAGTTGCCTAAATACGAGTATGTTTGGGAGTACTTATAAACTTCTAAAATAAATGCTTATAACAAAAGTGTAACGGCCCAAGCCCACCGCTAGCATATATTGTCCTCTTTGGGCTTTTCCTTTCGGGCTTCCCCTCAAGATTTTTAAAACGTGTCTTTTAGGGAGAGGTTTCCACACCCTTGTAAGGAAGGCTTTGTTCCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCCCTTGAGGGCCAACGTCCCTGCTGGCACACCGCCCGGTGACTGGCTTTGATACCATTTGTAACGGCCTAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGGTTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGCGTCTACTAGGGAGAGGTTTTCACACCTTTGTAAGGAAGGCTTCGTTCCCCTCTCCAACTGATGTGGGATCTCACAATCCATCCCTTGGGGGGTCAACGTCCCTGCCCGGTGACTGACTCTGATACCATTTGTAACGGCCTAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGGTTTTCCCTTTTGGGCTTCCCCTCAAGGTTTTTAAAACGCGCCTACTAGGGAGAGGTTTCCACACCCTTGTAAGGAAGGCTTCGTTACCCTCTCCAACTGATATGGGATCTCACAATCCACCTCTCTTGGGGGGCCAACGTCCCCGCCCGGTAATTGACTCTAATACCATTTGTAACGGTCTAAGCCCACCGCTAGTAGATATTGTCCTCTTTGGGTTTTCCCTTCCGCCTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGCATCTACTAGGGAGAGGTTTTCACACCCTTGTAAGGAAGGCTTCGTTCCCCTCTCCAACCGATGTGGGATTTCACAAAAAGTCTTTAATCACGAGCACCTTCGAAAAGAAGTGCTTAATGACGGATCATATTCGTGTTTGGTCCAACATTCTTAAGAATACTTTTCTTTTAGGTTCTTTCTCATCAAGCACTTGAGCCAATGGGGAAAATGCACTTTATCAGTGTTTTCTTACGAATCATTCAAGTGTTTTGAACAGTTTTTTTTTTATAAAAGAATACTTTTAAGTTACTTTCAAACATAGTATGCACACGACATTTCTCTGCCGGATTCGTTACATTTGTTGCCTTTCTTCTATGACTTTCTGGATGTAGTAGAAGCAAATTGAAGCACTTTTTCATTTATCTTTGATTAAATCAAGAACAATATTCAAGGTTAGATTCAAATCCAATGCAAAGCATCAGTTGTGGTGGTGCCTTTACAGTATTGAAGTAGATTGCCTGTGATCTCAGAGGGTTTTAATATTGCACTTATTAAGCTTGTGGGCTTCTGGATTCTGTTGTGTGATAGGTCCAAGAATTACAGTTCCTAGGAGTCTGCGTTGGGCAGCTTGTGGAGCAGCATCAATGAGTGCGACCTCGGCTTTGCTTGTTCGATTGTTTAGTCCAGAATGTGAACCTCAGAACATTGCTGCATATGACAAAGGGCAAGCTGCAAGGTAATTGACATTCAAAGCGCAATGATCTTAGTGTATTGCTTTTGAAGTTACAATTTTGTGTTTATGGTTGAGTACGTGATAGTTAACTATCTTGCCACGCACTCGGTTCGTTCATGGCTCCATACAACCATGTATTCAGTTACGTTGTTATTGTTAAGTTTCTCGACTCTTGTCATAGCTAAGGAGAAATTATTGGACGGAGTATGTTACAATGTGACAATGGCTTTGCAAAATGTATTTTCATAGGGACTAAATTGGTAACTTAATTTTAGATGTCGTATCGAGCTTTATATATTCCGACCCCATTAGTTGCTTGTTGGGGGTGGTTTCGAAAGTAGAATTAAAGTGACTCCAATTCCATTTCTTGAGTAGACATTTTTGTTATTTTCCCC

mRNA sequence

AAAAAATATTTAGTTCATCAGCGCAGCCCCAAATTCTGCGCCAGTATCTTCTTCTTCGCTAGTCACATTACGCGTTCGATTTCAGTCCTCTCTGTAATTCCGAAGCTCAGAGTCTGGGACCGGCGGCGGCAGAAGCACCGGCTACGCCCAAATTGCATTCGCCGTTGTTCTTCAGGAATTTAGCAGATGGCGCTTAGACGGTTCTTTGGTTTTTCTGATGGTGAGCTAATGAGATCGGACGCTAAACCGTGTTCACAGTTGATGAAACAGACTGCTGGATTATGTACTGTTGGAGGAGGACTTGCATTCTGGATTCTTTGCAGATTACACTATGGTCCAAGAATTACAGTTCCTAGGAGTCTGCGTTGGGCAGCTTGTGGAGCAGCATCAATGAGTGCGACCTCGGCTTTGCTTGTTCGATTGTTTAGTCCAGAATGTGAACCTCAGAACATTGCTGCATATGACAAAGGGCAAGCTGCAAGGTAATTGACATTCAAAGCGCAATGATCTTAGTGTATTGCTTTTGAAGTTACAATTTTGTGTTTATGGTTGAGTACGTGATAGTTAACTATCTTGCCACGCACTCGGTTCGTTCATGGCTCCATACAACCATGTATTCAGTTACGTTGTTATTGTTAAGTTTCTCGACTCTTGTCATAGCTAAGGAGAAATTATTGGACGGAGTATGTTACAATGTGACAATGGCTTTGCAAAATGTATTTTCATAGGGACTAAATTGGTAACTTAATTTTAGATGTCGTATCGAGCTTTATATATTCCGACCCCATTAGTTGCTTGTTGGGGGTGGTTTCGAAAGTAGAATTAAAGTGACTCCAATTCCATTTCTTGAGTAGACATTTTTGTTATTTTCCCC

Coding sequence (CDS)

ATGGCGCTTAGACGGTTCTTTGGTTTTTCTGATGGTGAGCTAATGAGATCGGACGCTAAACCGTGTTCACAGTTGATGAAACAGACTGCTGGATTATGTACTGTTGGAGGAGGACTTGCATTCTGGATTCTTTGCAGATTACACTATGGTCCAAGAATTACAGTTCCTAGGAGTCTGCGTTGGGCAGCTTGTGGAGCAGCATCAATGAGTGCGACCTCGGCTTTGCTTGTTCGATTGTTTAGTCCAGAATGTGAACCTCAGAACATTGCTGCATATGACAAAGGGCAAGCTGCAAGGTAA

Protein sequence

MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR
Homology
[Close]
BLAST of CmoCh12G008750 vs. ExPASy TrEMBL
Match: A0A6J1FAF1 (uncharacterized protein LOC111443868 OS=Cucurbita moschata OX=3662 GN=LOC111443868 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.1e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR 100
           WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR 99

[Close]
BLAST of CmoCh12G008750 vs. ExPASy TrEMBL
Match: A0A6J1I1J3 (uncharacterized protein LOC111468599 OS=Cucurbita maxima OX=3661 GN=LOC111468599 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.2e-49
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR 100
           WAACGAASMSATSALLVRLFSPECEPQNIAAYDKG+AAR
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGKAAR 99

[Close]
BLAST of CmoCh12G008750 vs. ExPASy TrEMBL
Match: A0A6J1DQC3 (uncharacterized protein LOC111023254 OS=Momordica charantia OX=3673 GN=LOC111023254 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.5e-44
Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 0 

Query: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRR  GFSDGE+MRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR 100
           WAACGA SMSATSALLVRLFSPECEPQNIAAYDK +  R
Sbjct: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 99

[Close]
BLAST of CmoCh12G008750 vs. ExPASy TrEMBL
Match: A0A1S3BWM4 (uncharacterized protein LOC103493937 OS=Cucumis melo OX=3656 GN=LOC103493937 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 0 

Query: 1  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRR  GFSDGE+MRSDAKPCSQLMKQTAGLC+V G L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRRLLGFSDGEIMRSDAKPCSQLMKQTAGLCSVEGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQ 97
          WAACGAASMSATSALLVRLFSPECEPQNIAAYD+G+
Sbjct: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDRGK 96

[Close]
BLAST of CmoCh12G008750 vs. ExPASy TrEMBL
Match: A0A1U8BA55 (uncharacterized protein LOC104611304 OS=Nelumbo nucifera OX=4432 GN=LOC104611304 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 86/96 (89.58%), Postives = 92/96 (95.83%), Query Frame = 0 

Query: 1  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRRFFGFSDGELMRSDAKPCS+LM+ TAG+ TVGG LAFW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRRFFGFSDGELMRSDAKPCSRLMRHTAGVFTVGGALAFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQ 97
          WAACGA SMS+TSALLVRLFSPECEPQNIAAYDKG+
Sbjct: 61 WAACGAVSMSSTSALLVRLFSPECEPQNIAAYDKGK 96

[Close]
BLAST of CmoCh12G008750 vs. TAIR 10
Match: AT1G57540.1 (unknown protein; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 160.6 bits (405), Expect = 6.4e-40
Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 1  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALR+  G+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRQKLGWSEGDLMRSDAKPCSRLMKQTAAIFTVGGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYD 94
          WA CGA S+S ++A+LVRLFSPECEPQNIAAYD
Sbjct: 61 WAGCGALSVSTSTAMLVRLFSPECEPQNIAAYD 93

[Close]
BLAST of CmoCh12G008750 vs. TAIR 10
Match: AT1G57540.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 160.6 bits (405), Expect = 6.4e-40
Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 1  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALR+  G+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRQKLGWSEGDLMRSDAKPCSRLMKQTAAIFTVGGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYD 94
          WA CGA S+S ++A+LVRLFSPECEPQNIAAYD
Sbjct: 61 WAGCGALSVSTSTAMLVRLFSPECEPQNIAAYD 93

[Close]
BLAST of CmoCh12G008750 vs. TAIR 10
Match: AT1G57540.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 160.6 bits (405), Expect = 6.4e-40
Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 1  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALR+  G+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRQKLGWSEGDLMRSDAKPCSRLMKQTAAIFTVGGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYD 94
          WA CGA S+S ++A+LVRLFSPECEPQNIAAYD
Sbjct: 61 WAGCGALSVSTSTAMLVRLFSPECEPQNIAAYD 93

The following BLAST results are available for this feature:
BLAST of CmoCh12G008750 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh12G008750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FAF14.1e-50100.00uncharacterized protein LOC111443868 OS=Cucurbita moschata OX=3662 GN=LOC1114438... [more]
A0A6J1I1J31.2e-4998.99uncharacterized protein LOC111468599 OS=Cucurbita maxima OX=3661 GN=LOC111468599... [more]
A0A6J1DQC32.5e-4489.90uncharacterized protein LOC111023254 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A1S3BWM41.6e-4389.58uncharacterized protein LOC103493937 OS=Cucumis melo OX=3656 GN=LOC103493937 PE=... [more]
A0A1U8BA551.6e-4389.58uncharacterized protein LOC104611304 OS=Nelumbo nucifera OX=4432 GN=LOC104611304... [more]
BLAST of CmoCh12G008750 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G57540.16.4e-4078.49unknown protein; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bac... [more]
AT1G57540.26.4e-4078.49unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
AT1G57540.36.4e-4078.49unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR3633140S RIBOSOMAL PROTEINcoord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G008750.1CmoCh12G008750.1mRNA