CmoCh12G008740 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G008740
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionBZIP transcription factor family protein
LocationCmo_Chr12: 7966264 .. 7966509 (-)
RNA-Seq ExpressionCmoCh12G008740
SyntenyCmoCh12G008740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCAACCAACAACAAGAGACAAAAGCCGAAGTCGCCCTCGTGCTTCTTTTCGATCTTCAGCTTATTTAGATCTCGAGATAGCAGAAAGAGGCGAGATGAAACGATAGACGATATGAGAAAGGTGTGGCCGAGCGATGAAGACAGAGACCGATATTGGGTGGCTGAGCCTGGCATTGATAGGAAAGCTAAGGCTTACATCGACAAGATTCATACCCAAATCCGCTCTTCTGGAACTGAATGA

mRNA sequence

ATGGCCTCAACCAACAACAAGAGACAAAAGCCGAAGTCGCCCTCGTGCTTCTTTTCGATCTTCAGCTTATTTAGATCTCGAGATAGCAGAAAGAGGCGAGATGAAACGATAGACGATATGAGAAAGGTGTGGCCGAGCGATGAAGACAGAGACCGATATTGGGTGGCTGAGCCTGGCATTGATAGGAAAGCTAAGGCTTACATCGACAAGATTCATACCCAAATCCGCTCTTCTGGAACTGAATGA

Coding sequence (CDS)

ATGGCCTCAACCAACAACAAGAGACAAAAGCCGAAGTCGCCCTCGTGCTTCTTTTCGATCTTCAGCTTATTTAGATCTCGAGATAGCAGAAAGAGGCGAGATGAAACGATAGACGATATGAGAAAGGTGTGGCCGAGCGATGAAGACAGAGACCGATATTGGGTGGCTGAGCCTGGCATTGATAGGAAAGCTAAGGCTTACATCGACAAGATTCATACCCAAATCCGCTCTTCTGGAACTGAATGA

Protein sequence

MASTNNKRQKPKSPSCFFSIFSLFRSRDSRKRRDETIDDMRKVWPSDEDRDRYWVAEPGIDRKAKAYIDKIHTQIRSSGTE
Homology
BLAST of CmoCh12G008740 vs. ExPASy TrEMBL
Match: A0A0A0LJ24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.8e-22
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 0

Query: 2  ASTNNKRQK-PKSPSCFFSIFSLFRSRDSRKRRDE--TIDDMRKVWPSDEDRDRYWVAEP 61
          +S NNKRQK  KS SC FSIFSLF+SRD  KR D+  T+DD RKVWPSD D+ R+WVAEP
Sbjct: 3  SSANNKRQKRQKSTSCCFSIFSLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEP 62

Query: 62 GIDRKAKAYIDKIHTQIRSSGTE 82
          GIDRKAKAYI+KIH QIRSS T+
Sbjct: 63 GIDRKAKAYIEKIHHQIRSSQTQ 85

BLAST of CmoCh12G008740 vs. ExPASy TrEMBL
Match: A0A5D3BDY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00610 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.0e-22
Identity = 59/80 (73.75%), Postives = 66/80 (82.50%), Query Frame = 0

Query: 2  ASTNNKRQK-PKSPSCFFSIFSLFRSRDSRKRRDE--TIDDMRKVWPSDEDRDRYWVAEP 61
          +S NNKRQK PKS SC FSIF LF+SRD  KR D+  T+DD RKVWPSD D+ R+WVAEP
Sbjct: 3  SSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEP 62

Query: 62 GIDRKAKAYIDKIHTQIRSS 79
          GIDRKAKAYI+KIH QIRSS
Sbjct: 63 GIDRKAKAYIEKIHHQIRSS 82

BLAST of CmoCh12G008740 vs. ExPASy TrEMBL
Match: W9R5Q4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022654 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.2e-11
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 3  STNNKRQKPKSPSCFFSIFSLFRSRDSRKRRDETIDDMRKVWPSDEDRDRYWVAEPGIDR 62
          + N+ RQK  S     S FSLFR + +R+  D  ++DMR+VWPSDEDR R WVAEPGIDR
Sbjct: 4  NNNSSRQKKGS-----SFFSLFRFKRNRRVDDYAVEDMRRVWPSDEDRGR-WVAEPGIDR 63

Query: 63 KAKAYIDKIHTQIRSS 79
          KA+A+I KIH  + ++
Sbjct: 64 KAEAFIAKIHKNMNTA 73

BLAST of CmoCh12G008740 vs. ExPASy TrEMBL
Match: A0A7J0ERL5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_06g0010680 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-10
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 0

Query: 5  NNKRQKPKSPSCFFSIFSLFRS-RDSRKRRDETIDD---MRKVWPSDEDRDRYWVAEPGI 64
          NN++QK  S SC FS F++F++ R S++  D + DD     K+WPSDEDR  + VAEPGI
Sbjct: 4  NNRQQKKSSSSCLFSFFNMFKAKRSSKEVEDNSRDDPVRYHKLWPSDEDRG-WCVAEPGI 63

Query: 65 DRKAKAYIDKIHTQ 75
          DRKA  YIDKI TQ
Sbjct: 64 DRKATTYIDKIRTQ 76

BLAST of CmoCh12G008740 vs. ExPASy TrEMBL
Match: V4SLM0 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013222mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.7e-09
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 12 KSPSCFFSIFSLFRSRDSRKRRDETIDDM----RKVWPSDEDRDRYWVAEPGIDRKAKAY 71
          K     FS+ ++F+SR + +R ++  DD+    RK+WPSDED+  YWVAEPGIDRKA A+
Sbjct: 5  KQKKSSFSLLNMFKSRRTNRRWEDPWDDVGSTPRKIWPSDEDKGAYWVAEPGIDRKASAF 64

Query: 72 IDKIH 73
          I K H
Sbjct: 65 ITKFH 69

BLAST of CmoCh12G008740 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-09
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 18 FSIFSLFRSRDS-RKRRDETIDDM---RKVWPSDEDRDRYWVAEPGIDRKAKAYIDKIH 73
          FS+FS F++R S R   D + DD    RK   SDED+ RYWVAEPGIDRKA A+I K H
Sbjct: 13 FSLFSFFKTRRSHRVEADGSWDDFGYTRKAMASDEDK-RYWVAEPGIDRKASAFIAKFH 70

BLAST of CmoCh12G008740 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-08
Identity = 30/51 (58.82%), Postives = 34/51 (66.67%), Query Frame = 0

Query: 25 RSRDSRKRRDETIDDM---RKVWPSDEDRDRYWVAEPGIDRKAKAYIDKIH 73
          RS   R   D + DD+   RK W SDED+ RYWVAEPGIDRKA A+I K H
Sbjct: 5  RSSHHRVEADASWDDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFH 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJ243.8e-2272.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1[more]
A0A5D3BDY25.0e-2273.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
W9R5Q45.2e-1153.95Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022654 PE=4 SV=1[more]
A0A7J0ERL52.0e-1055.41Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_06g0010680 PE=4 SV=1[more]
V4SLM03.7e-0950.77Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013222mg PE=4 ... [more]
Match NameE-valueIdentityDescription
AT3G05858.14.8e-0957.63unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G26620.13.1e-0858.82unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511OS06G0632400 PROTEINcoord: 2..77
NoneNo IPR availablePANTHERPTHR33511:SF17RIBOSOMAL PROTEIN S12coord: 2..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G008740.1CmoCh12G008740.1mRNA