CmoCh12G008570 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G008570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	UPF0057 membrane protein
Location	Cmo_Chr12: 7809010 .. 7810144 (-)
RNA-Seq Expression	CmoCh12G008570
Synteny	CmoCh12G008570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCTCTCTCTCTTTCTCTCTCTAATTTCTCTCCAAGATCGAAAATGGCGAACGGATGTGAGATCTTCTGCGAAATTCTCATCGCCATTCTTATTCCTCCTCTCGGAGTCTGCCTCAAACACGGCTGTTGCACGGTAATCTTAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCGTCTCTCTCTGTAATTTCCTCCGCTAATCTGAACTTACGATGACCTAAAACAGCCGACGAGACGATCTGATCTAAAACAGACGAAATTAGGTTTCAGTTTCGGTCTAATTTTGTGTGTAATTGCAGGTGGAATTTTGTCTCTGTTTGATTTTGACTCTGCTCGGTTACATTCCGGGGATCATATACGCTCTCTACTCCATCGTGTTTGTCGATCGCGATCATTTCTTCGACGAGTACAGGCGTCCGCTCTATTCGCCGGTGCCGACGGTGTAGAACAAGTTTGAATCTCTTCTTCACTCTGGTTTACTTTTTCGAATAAGGTTTATGGACTGTTTGGTTGCTTTCGGATATGATTTGATTTGATTTACATAGATTTTCTGAGGCTTTCTCTTCCTGATTTGGAGTTTATTAGGGAGTATTCGGATCATTTGATCAAGTGCTTAGAAAATTGAAAAATCAATGGCGTTAAAGAGATTGAAGTGTGTTCTTATGTAGAAAGAAATGTAGGTATTAGCCATGTATTGTAATTGCAACAAAGATCATTCAAGAAACAAGCCAAATATCATTCCAAATTCTAGACATTCTAGACATTGCATATGTTCGTGACTTTGAGCATAAGTTCTCATGACTTTGGTTTGAACTTATATTATACTATTGTGGAGAGTCGTGTTCATCTATCAGCAAACTAGACTATTATGCACATGACCCATTACCACTTATGTAACTTCTAGTGATGTAGATCGACCTCATCGTGGAAGTTGTTCGAGAAGATGACCACATGTGATACATGAGCTTATCGTTCATTTTTTTTTCTTTTGTAGAAAATAAGAAATGTTTTATTATTTTGGAACCGTTGTTAATGTGTTATCTTGTAATACTTTGTATGAAGTTTCCTTTTCCCATGGAACTGGGTCACGAATATTGAAATTGAAAGAAAAAAAATATCCAAAGATGG

mRNA sequence

CAGCTCTCTCTCTTTCTCTCTCTAATTTCTCTCCAAGATCGAAAATGGCGAACGGATGTGAGATCTTCTGCGAAATTCTCATCGCCATTCTTATTCCTCCTCTCGGAGTCTGCCTCAAACACGGCTGTTGCACGGTGGAATTTTGTCTCTGTTTGATTTTGACTCTGCTCGGTTACATTCCGGGGATCATATACGCTCTCTACTCCATCGTGTTTGTCGATCGCGATCATTTCTTCGACGAGTACAGGCGTCCGCTCTATTCGCCGGTGCCGACGGTGTAGAACAAGTTTGAATCTCTTCTTCACTCTGGTTTACTTTTTCGAATAAGGTTTATGGACTGTTTGGTTGCTTTCGGATATGATTTGATTTGATTTACATAGATTTTCTGAGGCTTTCTCTTCCTGATTTGGAGTTTATTAGGGAGTATTCGGATCATTTGATCAAGTGCTTAGAAAATTGAAAAATCAATGGCGTTAAAGAGATTGAAGTGTGTTCTTATGTAGAAAGAAATGTAGGTATTAGCCATGTATTGTAATTGCAACAAAGATCATTCAAGAAACAAGCCAAATATCATTCCAAATTCTAGACATTCTAGACATTGCATATGTTCGTGACTTTGAGCATAAGTTCTCATGACTTTGGTTTGAACTTATATTATACTATTGTGGAGAGTCGTGTTCATCTATCAGCAAACTAGACTATTATGCACATGACCCATTACCACTTATGTAACTTCTAGTGATGTAGATCGACCTCATCGTGGAAGTTGTTCGAGAAGATGACCACATGTGATACATGAGCTTATCGTTCATTTTTTTTTCTTTTGTAGAAAATAAGAAATGTTTTATTATTTTGGAACCGTTGTTAATGTGTTATCTTGTAATACTTTGTATGAAGTTTCCTTTTCCCATGGAACTGGGTCACGAATATTGAAATTGAAAGAAAAAAAATATCCAAAGATGG

Coding sequence (CDS)

ATGGCGAACGGATGTGAGATCTTCTGCGAAATTCTCATCGCCATTCTTATTCCTCCTCTCGGAGTCTGCCTCAAACACGGCTGTTGCACGGTGGAATTTTGTCTCTGTTTGATTTTGACTCTGCTCGGTTACATTCCGGGGATCATATACGCTCTCTACTCCATCGTGTTTGTCGATCGCGATCATTTCTTCGACGAGTACAGGCGTCCGCTCTATTCGCCGGTGCCGACGGTGTAG

Protein sequence

MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDRDHFFDEYRRPLYSPVPTV

Homology

[Close]

BLAST of CmoCh12G008570 vs. ExPASy Swiss-Prot
Match: O82232 (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-26
Identity = 52/72 (72.22%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MA+ CE+ CEI IAIL+PP+GVCL+HGCCTVEF +CLILT LGY+PGIIYA+Y+I F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 DHFFDEYRRPLY 73
          D +FDEYRRP+Y
Sbjct: 61 DEYFDEYRRPIY 72

[Close]

BLAST of CmoCh12G008570 vs. ExPASy Swiss-Prot
Match: Q9SUI0 (UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana OX=3702 GN=At4g30660 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.9e-26
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          M + CEI CEI+IAIL+PPLGVC + GCCTVEF +CL+LT+LGY+PGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DHFFDEYRRPLYS 74
          + +FDEYRRP+YS
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]

BLAST of CmoCh12G008570 vs. ExPASy Swiss-Prot
Match: Q9M095 (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana OX=3702 GN=At4g30650 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.1e-21
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MA+  E+FCEILIAIL+PPLGVCLK GCCTVEF +CL+LT+LGYIPGIIYALY IVF +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query: 61 D 62
          +
Sbjct: 61 E 61

[Close]

BLAST of CmoCh12G008570 vs. ExPASy Swiss-Prot
Match: Q9LRI7 (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSR8 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.9e-17
Identity = 41/68 (60.29%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1  MANG-CEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVD 60
          MA+G C  F EIL+AI++PPLGV L+ GCC++EFC+CL+LT+LGY+PGIIYA+Y +V +D
Sbjct: 1  MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLVALD 60

Query: 61 RDHFFDEY 68
           D +  EY
Sbjct: 61 SDQYQREY 68

[Close]

BLAST of CmoCh12G008570 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.3e-10
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 8  FCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALY 54
          F +I+IAIL+PPLGV L+ G C VEF +CL+LTLLGYIPGIIYA+Y
Sbjct: 6  FVDIIIAILLPPLGVFLRFG-CGVEFWICLVLTLLGYIPGIIYAIY 50

[Close]

BLAST of CmoCh12G008570 vs. ExPASy TrEMBL
Match: A0A6J1FBZ3 (UPF0057 membrane protein At4g30660-like OS=Cucurbita moschata OX=3662 GN=LOC111444230 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.1e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR
Sbjct: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60

Query: 61 DHFFDEYRRPLYSPVPTV 79
          DHFFDEYRRPLYSPVPTV
Sbjct: 61 DHFFDEYRRPLYSPVPTV 78

[Close]

BLAST of CmoCh12G008570 vs. ExPASy TrEMBL
Match: A0A6J1HWQ4 (UPF0057 membrane protein At4g30660-like OS=Cucurbita maxima OX=3661 GN=LOC111468565 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.0e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MAN CEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR
Sbjct: 1  MANRCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60

Query: 61 DHFFDEYRRPLYSPVPTV 79
          DHFFDEYRRPLYSPVPTV
Sbjct: 61 DHFFDEYRRPLYSPVPTV 78

[Close]

BLAST of CmoCh12G008570 vs. ExPASy TrEMBL
Match: A0A6J1DV17 (UPF0057 membrane protein At2g24040-like OS=Momordica charantia OX=3673 GN=LOC111024708 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 71/78 (91.03%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MANGCEI CEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGY+PGIIYALY+IVFVDR
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYVPGIIYALYAIVFVDR 60

Query: 61 DHFFDEYRRPLYSPVPTV 79
          D FFDEYRRPLY+PV  V
Sbjct: 61 DQFFDEYRRPLYAPVSAV 78

[Close]

BLAST of CmoCh12G008570 vs. ExPASy TrEMBL
Match: A0A6J1KI35 (UPF0057 membrane protein At2g24040-like OS=Cucurbita maxima OX=3661 GN=LOC111494032 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 70/78 (89.74%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MANGCEI CEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALY+IV+VDR
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60

Query: 61 DHFFDEYRRPLYSPVPTV 79
          D FFDEYRRPLYS    V
Sbjct: 61 DQFFDEYRRPLYSQASAV 78

[Close]

BLAST of CmoCh12G008570 vs. ExPASy TrEMBL
Match: A0A6J1G463 (UPF0057 membrane protein At2g24040-like OS=Cucurbita moschata OX=3662 GN=LOC111450578 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 70/78 (89.74%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MANGCEI CEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALY+IV+VDR
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60

Query: 61 DHFFDEYRRPLYSPVPTV 79
          D FFDEYRRPLYS    V
Sbjct: 61 DQFFDEYRRPLYSQASAV 78

[Close]

BLAST of CmoCh12G008570 vs. TAIR 10
Match: AT4G28088.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 134.4 bits (337), Expect = 3.9e-32
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MANGCEI CEI+IAILIPPLGVCL+HGCCT EF +CLILTLLGY+PGIIYALY+IV+VDR
Sbjct: 1  MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDR 60

Query: 61 DHFFDEYRRPLY 73
          D FFDEYRRPL+
Sbjct: 61 DQFFDEYRRPLF 72

[Close]

BLAST of CmoCh12G008570 vs. TAIR 10
Match: AT2G24040.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 119.8 bits (299), Expect = 9.9e-28
Identity = 52/72 (72.22%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MA+ CE+ CEI IAIL+PP+GVCL+HGCCTVEF +CLILT LGY+PGIIYA+Y+I F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 DHFFDEYRRPLY 73
          D +FDEYRRP+Y
Sbjct: 61 DEYFDEYRRPIY 72

[Close]

BLAST of CmoCh12G008570 vs. TAIR 10
Match: AT4G30660.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 117.5 bits (293), Expect = 4.9e-27
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          M + CEI CEI+IAIL+PPLGVC + GCCTVEF +CL+LT+LGY+PGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DHFFDEYRRPLYS 74
          + +FDEYRRP+YS
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]

BLAST of CmoCh12G008570 vs. TAIR 10
Match: AT4G30660.2 (Low temperature and salt responsive protein family )

HSP 1 Score: 117.5 bits (293), Expect = 4.9e-27
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          M + CEI CEI+IAIL+PPLGVC + GCCTVEF +CL+LT+LGY+PGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DHFFDEYRRPLYS 74
          + +FDEYRRP+YS
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]

BLAST of CmoCh12G008570 vs. TAIR 10
Match: AT4G30650.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 101.3 bits (251), Expect = 3.6e-22
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MA+  E+FCEILIAIL+PPLGVCLK GCCTVEF +CL+LT+LGYIPGIIYALY IVF +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query: 61 D 62
          +
Sbjct: 61 E 61

The following BLAST results are available for this feature:

BLAST of CmoCh12G008570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82232	1.4e-26	72.22	UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 ...	[more]
Q9SUI0	6.9e-26	69.86	UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana OX=3702 GN=At4g30660 ...	[more]
Q9M095	5.1e-21	77.05	UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana OX=3702 GN=At4g30650 ...	[more]
Q9LRI7	5.9e-17	60.29	Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSR8 PE=3 S...	[more]
Q9ZNQ7	5.3e-10	71.74	Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1	[more]

BLAST of CmoCh12G008570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBZ3	1.1e-37	100.00	UPF0057 membrane protein At4g30660-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1HWQ4	9.0e-37	98.72	UPF0057 membrane protein At4g30660-like OS=Cucurbita maxima OX=3661 GN=LOC111468...	[more]
A0A6J1DV17	1.6e-33	91.03	UPF0057 membrane protein At2g24040-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1KI35	3.0e-32	89.74	UPF0057 membrane protein At2g24040-like OS=Cucurbita maxima OX=3661 GN=LOC111494...	[more]
A0A6J1G463	3.0e-32	89.74	UPF0057 membrane protein At2g24040-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of CmoCh12G008570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28088.1	3.9e-32	84.72	Low temperature and salt responsive protein family	[more]
AT2G24040.1	9.9e-28	72.22	Low temperature and salt responsive protein family	[more]
AT4G30660.1	4.9e-27	69.86	Low temperature and salt responsive protein family	[more]
AT4G30660.2	4.9e-27	69.86	Low temperature and salt responsive protein family	[more]
AT4G30650.1	3.6e-22	77.05	Low temperature and salt responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 8..56 e-value: 1.3E-16 score: 60.5
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 1..73
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 12..27
None	No IPR available	PANTHER	PTHR21659:SF93	BNAA03G50460D PROTEIN	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G008570.1	CmoCh12G008570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane