CmoCh12G008540 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G008540
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Translation initiation factor IF-3
Location	Cmo_Chr12: 7796289 .. 7799881 (+)
RNA-Seq Expression	CmoCh12G008540
Synteny	CmoCh12G008540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGTTAAGAAATTGAAGAACTCCCACCCTTCACTGTCTCCTCCCTTCCCACAGCTCAAATCTATGGCTGGGCTCACCGCCAGATTTCCTTTCAAACCTCTCTTATCCCATTCCTCCGCCTCGCCCACCACCTCTGCCGCCGCGCCCTCCTCCTCCGCCACCGCCACTCCCATCCGGACCTCAATTTCCCCTCTCCCCCTCTCCTCCTCCTCTAAGTCCAATGCCTTCAGATTCCGCCTCCACAACTCCAATTCTCTGCATCTCCTCTTCACAACTTCAACTCGTAGTACTGTAGTTGCTCAATACGGCGGTGGTTCTCGGCCTTCAGGACCGGCGGATTCTAAGCGCTTTGACGATGGTCTTGGTGTCGATATTTCCGCCATTAGGTGTGTGTGCCTTAATCTTGCTAGAGTTACATGTATGATGGATGGGTTTTGTTCATTATCATTATTATTTATTTATGATTATTTGGATTTCTTATTTGTTTGATTGCGTTTATATGGTTGATTTGTTTAGATCGAATACTGTGAGGCTTATCGATGCACAACAGAACATGGTAGGTGGTTTGTTTTAAGCAATTTTCTGTTTGTTTCCTTTTGCTACATTGCAACACATGTCATTTAGGCGTCGTAGTTTGGAATTTTGACCTTCTTGAAATGAACAAATAGGTTGGAATCGTGTCGAAGGCTCAGGCCATTCAAATGGCTGATGACGCTGAACTTGATTTGGTAGGTCTTCTTGTACCGTTTGTTGTTAAAGCAATTTTCTATATTTGTCTGGGAATTCCAAAGAACCTTGCCCCTAACTTCAATGTTCTTGTGAGGACTAATTGCATAGTTGGTCTTAAATCGAAAGCACGAAATTTAGAATGTGCCTTTTAGCTTAAGCTTGATGTTCATCTTAAATCTTAATTCATTTTTTCACTTTATGTTTATTTATTGCCTCTTGGGTTTTGGTTTTTATCTTCAATAAACTGTTCTCTTTATAAACATGAGCATGAAATTGAAAGCTTATAATAATAGTAATCGAAAAATTATAGATATGTTATAGTATGTCCTCTAAACTATAAGAATCATCGCATGGTGAATGAATTTCATTTTGGGGTTGTGCATTAGGCCAATTTTACTATATAGAATTGTACTTTCCTTCCCATATGGTATAGACCGGCAAAGAAACGTCTATTTGTCGACACAAGACTTGGATGAGTGCTGAGTGATGCGTTGTTATTAAGATATATGAGAATGAAGATCGACACAAGACTTGGATGAATGCTGAGTGATGCGTTGTTATTAAGATATATGAGAATGAAGACCGACACAAGACTTGGATGAATGCTGAGTGGCATTGTTATTAAGATATATGAGAAAAACTTCATTTGACCTGCGAGTTCATAACATAATACTCTTTCAGCAATCAACAATTTATGAATCTCATTTCACTATTTGTGTATTGTTCACCTTTTAACTTGGATGAAGAAGGTCGTCGACTAATATTTTTACTGGAATCTAGATGTTTGTGTGTTCTTTGTGTAGGAATTAGCCAATTCTTTCCATTTCATGCAGGTTGTATTATCACCTGATGCAGATCCTCCAGTTGTCAGAATAATGGATTACAGGTATGCCATTTAACCAATGATTACACCAATACTTATCAAAAGCATCTTTTGGTGATTTATTTTTCAGTTCGTACTTTAATTTTAATTAAATGTTCCCGAAAAATTAATATTTAACAAATGCTAAATAGATGGAAATGTTGTAGATTAGAATGGAGAAGGAATGAAACTATGGGAGAATTAAAAGGTCACATTGTTTTTCCTTGTTAATTAACTCCAAATGAACAATATGATGATTGTTATCTTTACAGTGGGAGAATTAAAAGGCGACATCGTTTTTCCTTGTTAAATAACTCAAGTTCTTGTTACTTGGACGTTGAGATTTTTTTTTTCGGTCTCGTTTCTCAGTAAATATAGGTATGAACAGCAAAAGAAGAAAAGGGGACAACAGAAGAAGAGTGCTGGTGAATCTCTTTCTTAATAGACTCTTCATATTCTCTTTGGTTCACAATCTTTCAGATTTGAGGAAAGATACTGACGAAGTGTTGTTTTGAATGTTAGCAACTCGCATGGATTTGAAAGAGCTTAAAATGGGGTAACACATTCCTTCATTGCCTTTTCTTTTTGGAGGTCATCTTTCTTTTCTTTTTCCTTCTGTCTAAAGCCACTCGAACTTGTGACTTCTAAGATCGATAAATAACCTACAAAGAAAAGAGCTATGAGCGGCTTTTGTTCGCTATATCCGAAAAAATTCTGCGAGTATCGTTTTCTCAGTCTCAACCTTCTGGTTGCTATTATTATTGCACAGTTACAACATCGACCAACATGATTACTCTGTCCGTTTGAAAGCTGCAAGGAAGTTTTTGAAAGATGGAGATAAGGTTTCTTTTCGAATCTACCATATCTTTGATTGTCTGTTCATGCATTCAAGTAGATCGTTATAGTTTGTCTGAATCACTTTGAAATCTTTTAACAAAATGTTGTAGGTTAAAGTTATAGTGAACTTGAAAGGTCGTGAGAATGCGTTCAAGAACATAGCAATTGAGCTCATCAGACGTTTTCAGGAAGAGATTGGGGAGGTATTCATTTTCTGTCAATTTTGTGCCACCTCTGTCAATTGTCCATCACTGTGGTATTGTTGCTCAATAAGATGCTCCAAATTATTTTAAGTGAAATTTTAAAGGGTAAATTTAGGCACGTGTTTGAACGATATTAAGTCTGATATCATCACCTCATGGAGCACGTTTCGTAGCTCCGGGGAGACTGTTCTTGCAAACAGCTTTTGAAAACTGTTTAATATAACCGTTCTCCGGCTGTGAGATGTCAGTTTAAGCATCCTAGTCTCACGAGGCACTCTACCTAACTCTGTAATATTTTGGTTGATAGTATATGTCTTAACCAATTGAGTTACTCATGTTAGCCCTCGACAATTTATAATATGTAATATTTTAATATCTTAGATAGGTGGCTATAATATATATATATATAGATATATTTCATTTTAAGGTCTACTAATCTATCTCATTTATATTCCTAATGTAAATTTGATGCCATATTTATGCTTCTTGCTAATACTTTAAACAAACACAATATATCTTGTGTTTATGTCTGATCCAATGACCTGCTCAATATTTTTATCATACACAGCTTGCAACTGAAGAGGCCAAGAACTTAAGAGACAGGAATATGTTTATTGTTCTAGCTCCTAACAAGGCTGTTCTACAGAAGGCTCAAGAACCCCCCAAGGTAAAAGACAACCTTGTAGTTAATGAAGTTTCTGCCAGTGTTTAAGCTCAAGAAGCGTCGGGATTAAGCTCAAAGTAGAATGGTTAGTCACCACAATCTAAATATTCTTCTACCATAGAGAAATATGAGAGTTCTGTGTTTAATACTTCGTTTAATATAATGCATCATACTTTTGTCCATTCTACTTTTTAGTGGAATGTTTAGAAATCAGACGTGTTACTAATTCTTTTGAAAATGATATAGCATTAGTAGCCGAGCATTGTGAGATCTCACATCGGTTGGGGATGAGAACGGA

mRNA sequence

AAAGTTAAGAAATTGAAGAACTCCCACCCTTCACTGTCTCCTCCCTTCCCACAGCTCAAATCTATGGCTGGGCTCACCGCCAGATTTCCTTTCAAACCTCTCTTATCCCATTCCTCCGCCTCGCCCACCACCTCTGCCGCCGCGCCCTCCTCCTCCGCCACCGCCACTCCCATCCGGACCTCAATTTCCCCTCTCCCCCTCTCCTCCTCCTCTAAGTCCAATGCCTTCAGATTCCGCCTCCACAACTCCAATTCTCTGCATCTCCTCTTCACAACTTCAACTCGTAGTACTGTAGTTGCTCAATACGGCGGTGGTTCTCGGCCTTCAGGACCGGCGGATTCTAAGCGCTTTGACGATGGTCTTGGTGTCGATATTTCCGCCATTAGATCGAATACTGTGAGGCTTATCGATGCACAACAGAACATGGTTGGAATCGTGTCGAAGGCTCAGGCCATTCAAATGGCTGATGACGCTGAACTTGATTTGGTTGTATTATCACCTGATGCAGATCCTCCAGTTGTCAGAATAATGGATTACAGTAAATATAGGTATGAACAGCAAAAGAAGAAAAGGGGACAACAGAAGAAGAGTGCTGCAACTCGCATGGATTTGAAAGAGCTTAAAATGGGTTACAACATCGACCAACATGATTACTCTGTCCGTTTGAAAGCTGCAAGGAAGTTTTTGAAAGATGGAGATAAGGTTAAAGTTATAGTGAACTTGAAAGGTCGTGAGAATGCGTTCAAGAACATAGCAATTGAGCTCATCAGACGTTTTCAGGAAGAGATTGGGGAGCTTGCAACTGAAGAGGCCAAGAACTTAAGAGACAGGAATATGTTTATTGTTCTAGCTCCTAACAAGGCTGTTCTACAGAAGGCTCAAGAACCCCCCAAGGTAAAAGACAACCTTGTAGTTAATGAAGTTTCTGCCAGTGTTTAAGCTCAAGAAGCGTCGGGATTAAGCTCAAAGTAGAATGGTTAGTCACCACAATCTAAATATTCTTCTACCATAGAGAAATATGAGAGTTCTGTGTTTAATACTTCGTTTAATATAATGCATCATACTTTTGTCCATTCTACTTTTTAGTGGAATGTTTAGAAATCAGACGTGTTACTAATTCTTTTGAAAATGATATAGCATTAGTAGCCGAGCATTGTGAGATCTCACATCGGTTGGGGATGAGAACGGA

Coding sequence (CDS)

ATGGCTGGGCTCACCGCCAGATTTCCTTTCAAACCTCTCTTATCCCATTCCTCCGCCTCGCCCACCACCTCTGCCGCCGCGCCCTCCTCCTCCGCCACCGCCACTCCCATCCGGACCTCAATTTCCCCTCTCCCCCTCTCCTCCTCCTCTAAGTCCAATGCCTTCAGATTCCGCCTCCACAACTCCAATTCTCTGCATCTCCTCTTCACAACTTCAACTCGTAGTACTGTAGTTGCTCAATACGGCGGTGGTTCTCGGCCTTCAGGACCGGCGGATTCTAAGCGCTTTGACGATGGTCTTGGTGTCGATATTTCCGCCATTAGATCGAATACTGTGAGGCTTATCGATGCACAACAGAACATGGTTGGAATCGTGTCGAAGGCTCAGGCCATTCAAATGGCTGATGACGCTGAACTTGATTTGGTTGTATTATCACCTGATGCAGATCCTCCAGTTGTCAGAATAATGGATTACAGTAAATATAGGTATGAACAGCAAAAGAAGAAAAGGGGACAACAGAAGAAGAGTGCTGCAACTCGCATGGATTTGAAAGAGCTTAAAATGGGTTACAACATCGACCAACATGATTACTCTGTCCGTTTGAAAGCTGCAAGGAAGTTTTTGAAAGATGGAGATAAGGTTAAAGTTATAGTGAACTTGAAAGGTCGTGAGAATGCGTTCAAGAACATAGCAATTGAGCTCATCAGACGTTTTCAGGAAGAGATTGGGGAGCTTGCAACTGAAGAGGCCAAGAACTTAAGAGACAGGAATATGTTTATTGTTCTAGCTCCTAACAAGGCTGTTCTACAGAAGGCTCAAGAACCCCCCAAGGTAAAAGACAACCTTGTAGTTAATGAAGTTTCTGCCAGTGTTTAA

Protein sequence

MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV

Homology

[Close]

BLAST of CmoCh12G008540 vs. ExPASy Swiss-Prot
Match: Q94B52 (Translation initiation factor IF3-4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IF3-4 PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 3.0e-74
Identity = 152/212 (71.70%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 82  GGGSRPSGP--ADSKRFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAEL 141
           GGGSR  G      K  +D   +DISAIRS TVRLID QQNM+G+VSK +A++ A+DAEL
Sbjct: 64  GGGSRFPGDRRGRQKESEDDDSLDISAIRSATVRLIDDQQNMIGLVSKEEAVRRAEDAEL 123

Query: 142 DLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSV 201
           DLV+LSPDADPPVVR+MDYSKYRYEQQK+K+ QQKK+  TRMDLKELKMGYNIDQHDYSV
Sbjct: 124 DLVILSPDADPPVVRMMDYSKYRYEQQKRKKEQQKKT--TRMDLKELKMGYNIDQHDYSV 183

Query: 202 RLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMF 261
           R++AARKFL+DGDKVKVIVN+KGREN F+NIAIEL+RRFQ EIGEL TEE+KN RDRN+F
Sbjct: 184 RMRAARKFLQDGDKVKVIVNMKGRENEFRNIAIELLRRFQTEIGELGTEESKNFRDRNLF 243

Query: 262 IVLAPNKAVLQKAQE-PPKVKDNLVVNEVSAS 291
           IVL PNK V++K QE PPK K     ++VSA+
Sbjct: 244 IVLVPNKEVIRKVQEPPPKKKKKPADDKVSAA 273

[Close]

BLAST of CmoCh12G008540 vs. ExPASy Swiss-Prot
Match: O82234 (Translation initiation factor IF3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IF3-2 PE=2 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 5.1e-74
Identity = 154/217 (70.97%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 82  GGGSRPSGPADSKR-------FDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMA 141
           GGG R SG  D++R        D+ L  DIS+IRS TVRLID QQNM+G+VSK +A++MA
Sbjct: 67  GGGYRFSG--DNRRGRPKEAEIDEAL--DISSIRSATVRLIDGQQNMLGLVSKDEAVRMA 126

Query: 142 DDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQ 201
           DDAELDLV+LSPDADPPVV++MDYSKYRYEQQK+K+ QQKK+  TRMDLKELKMGYNIDQ
Sbjct: 127 DDAELDLVILSPDADPPVVKMMDYSKYRYEQQKRKKDQQKKT--TRMDLKELKMGYNIDQ 186

Query: 202 HDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLR 261
           HDYSVRL+AA+KFL+DGDKVKVIV++KGREN F+NIAIEL+RRFQ EIGELATEE+KN R
Sbjct: 187 HDYSVRLRAAQKFLQDGDKVKVIVSMKGRENEFRNIAIELLRRFQTEIGELATEESKNFR 246

Query: 262 DRNMFIVLAPNKAVLQKAQEPP-KVKDNLVVNEVSAS 291
           DRNMFI+L PNK +++K QEPP + K     NE SAS
Sbjct: 247 DRNMFIILVPNKEMIRKPQEPPTRKKKKTAENEASAS 277

[Close]

BLAST of CmoCh12G008540 vs. ExPASy Swiss-Prot
Match: B0JKQ1 (Translation initiation factor IF-3 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=infC PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-31
Identity = 72/161 (44.72%), Postives = 112/161 (69.57%), Query Frame = 0


Query: 107 IRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQ 166
           IR   +R+ID+  + +GI++ A+A+++A++ ELDLV++S  A PPV RIMDY KY++EQ+
Sbjct: 18  IRFPEIRVIDSDGSQLGIITPAEALRVAEEKELDLVLVSETASPPVCRIMDYGKYKFEQE 77

Query: 167 KKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENA 226
           KK R  +KK      D+KE+KM Y ID+HDY+VR+  A++FLK GDKVK  +  +GRE  
Sbjct: 78  KKAREAKKKQHTA--DIKEVKMRYKIDEHDYNVRVNQAQRFLKAGDKVKATITFRGREIQ 137

Query: 227 FKNIAIELIRRFQEEIGELA-TEEAKNLRDRNMFIVLAPNK 267
             N+A EL+ R  +++ ++A  ++A     RNM ++L+P K
Sbjct: 138 HSNLAEELLARMAKDLQDVAEVQQAPKKEGRNMMMMLSPKK 176

[Close]

BLAST of CmoCh12G008540 vs. ExPASy Swiss-Prot
Match: Q8R9C2 (Translation initiation factor IF-3 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=infC PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-31
Identity = 73/161 (45.34%), Postives = 111/161 (68.94%), Query Frame = 0


Query: 107 IRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQ 166
           IR   VRLID     +GI+S  +A ++A +  LDLV + P+A+PPV ++MD+ KYRYE  
Sbjct: 21  IRDKEVRLIDQDGKQIGIMSAKEAYKIAQERHLDLVKIVPNANPPVCKLMDFGKYRYELS 80

Query: 167 KKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENA 226
           K+++  +KK     +++KE++M  NI+ HD+ V+LK+A KFLKDGDKVKV +  +GRE A
Sbjct: 81  KREKEAKKKQKI--INVKEIRMSPNIEDHDFGVKLKSAIKFLKDGDKVKVTIRFRGREAA 140

Query: 227 FKNIAIELIRRFQEEIGELA-TEEAKNLRDRNMFIVLAPNK 267
             ++A +L++RF EE+ E    E+A ++  RNM +V+AP K
Sbjct: 141 HTSLAEDLLKRFAEELREYGNVEKAPSMDGRNMMMVIAPKK 179

[Close]

BLAST of CmoCh12G008540 vs. ExPASy Swiss-Prot
Match: Q8YNE3 (Translation initiation factor IF-3 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=infC PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.4e-31
Identity = 75/163 (46.01%), Postives = 111/163 (68.10%), Query Frame = 0


Query: 107 IRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQ 166
           IR   +R+ID   + +GI++  +A+Q+A++ ELDLV+LS  ADPPV RIMDY KY++EQ+
Sbjct: 19  IRFPKIRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVCRIMDYGKYKFEQE 78

Query: 167 KKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENA 226
           KK R  +KK      D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK  V  +GRE  
Sbjct: 79  KKAREARKKQHTA--DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGREIQ 138

Query: 227 FKNIAIELIRRFQ---EEIGELATEEAKNLRDRNMFIVLAPNK 267
             ++A +L++R     E  GE+  ++A     RNM ++++P K
Sbjct: 139 HSDLAEDLLKRMATDLEPFGEV--QQAPKKEGRNMMMLISPKK 177

[Close]

BLAST of CmoCh12G008540 vs. ExPASy TrEMBL
Match: A0A6J1FCR3 (Translation initiation factor IF-3 OS=Cucurbita moschata OX=3662 GN=LOC111444202 PE=3 SV=1)

HSP 1 Score: 538.1 bits (1385), Expect = 2.3e-149
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0


Query: 1   MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLH 60
           MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLH
Sbjct: 1   MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLH 60

Query: 61  NSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGLGVDISAIRSNTVRLIDAQQN 120
           NSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGLGVDISAIRSNTVRLIDAQQN
Sbjct: 61  NSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGLGVDISAIRSNTVRLIDAQQN 120

Query: 121 MVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATR 180
           MVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATR
Sbjct: 121 MVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATR 180

Query: 181 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQE 240
           MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQE
Sbjct: 181 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQE 240

Query: 241 EIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV 292
           EIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
Sbjct: 241 EIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV 291

[Close]

BLAST of CmoCh12G008540 vs. ExPASy TrEMBL
Match: A0A6J1I0C0 (Translation initiation factor IF-3 OS=Cucurbita maxima OX=3661 GN=LOC111468564 PE=3 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 5.0e-141
Identity = 281/293 (95.90%), Postives = 284/293 (96.93%), Query Frame = 0


Query: 1   MAGLTARFPFKPLLSHSSASPTTSAAAPSSSAT--ATPIRTSISPLPLSSSSKSNAFRFR 60
           MAGLT RFPFKPLLSHSSA+PTTSAAAPSSSAT  ATPIRTSISPLPL SSSK NAFRFR
Sbjct: 1   MAGLTGRFPFKPLLSHSSATPTTSAAAPSSSATAIATPIRTSISPLPL-SSSKFNAFRFR 60

Query: 61  LHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGLGVDISAIRSNTVRLIDAQ 120
            HNSNSLHL+FTTSTRSTVV+QYGG SR SGPADSKRFDDGLGVDISAIRSNTVRLIDAQ
Sbjct: 61  HHNSNSLHLVFTTSTRSTVVSQYGGASRSSGPADSKRFDDGLGVDISAIRSNTVRLIDAQ 120

Query: 121 QNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAA 180
           QNMVGIVSK QAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAA
Sbjct: 121 QNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAA 180

Query: 181 TRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRF 240
           TRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRF
Sbjct: 181 TRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRF 240

Query: 241 QEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV 292
           QEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
Sbjct: 241 QEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV 292

[Close]

BLAST of CmoCh12G008540 vs. ExPASy TrEMBL
Match: A0A6J1DYM5 (Translation initiation factor IF-3 OS=Momordica charantia OX=3673 GN=LOC111024717 PE=3 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 7.1e-119
Identity = 240/292 (82.19%), Postives = 262/292 (89.73%), Query Frame = 0


Query: 1   MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATAT-PIRTSISPLPLSSSSKSNAFRFRL 60
           MAGLT+RFPFKPLLS SSA+ +++AA+ SSSA A  P RTSISPLPL SSS+SNAF FRL
Sbjct: 1   MAGLTSRFPFKPLLSQSSATTSSAAASSSSSAAAAPPFRTSISPLPL-SSSESNAFGFRL 60

Query: 61  HNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGLGVDISAIRSNTVRLIDAQQ 120
           HNSNSL L+ ++  R +V A++GG  R SGPADSKR DD  G+D+SAIRSN VRLIDAQQ
Sbjct: 61  HNSNSLRLIVSSPIRRSVFARFGGAPRSSGPADSKRSDDDFGLDVSAIRSNNVRLIDAQQ 120

Query: 121 NMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAAT 180
           NMVGIVSKAQAIQMA+DAELDLVVLSPDADPPVVRIMDY+KYRYE QKKKRGQQKKSAAT
Sbjct: 121 NMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAAT 180

Query: 181 RMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQ 240
           RMDLKELKMGYNIDQHDYSVRLKAAR+FLKDGDKVKVIVNLKGREN F+NIAIELIRRFQ
Sbjct: 181 RMDLKELKMGYNIDQHDYSVRLKAARRFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQ 240

Query: 241 EEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV 292
           +EIGELATEEAKN RDRN+FIVL PNKAVLQKAQEPPK KDN  +NEVSA V
Sbjct: 241 DEIGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDNPAINEVSAGV 291

[Close]

BLAST of CmoCh12G008540 vs. ExPASy TrEMBL
Match: A0A1S3BV82 (Translation initiation factor IF-3 OS=Cucumis melo OX=3656 GN=LOC103493630 PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 5.8e-113
Identity = 231/297 (77.78%), Postives = 255/297 (85.86%), Query Frame = 0


Query: 1   MAGLTARFPFKPLLSHSSASPTTS--AAAPSSSATATPIRTSISPLPLSSSSKSNAFRFR 60
           MAGL+  FPFK LLS SSA+ TT+  AAAP+SS++ TP RTS   LP+SSS  SNAF+ R
Sbjct: 1   MAGLSGSFPFKSLLSQSSAASTTTSPAAAPTSSSSTTPFRTSTPSLPISSSFNSNAFKLR 60

Query: 61  LHNSNSLHLLF----TTSTRSTVVAQYGGGSRPSGPADSKRFDDGLGVDISAIRSNTVRL 120
           LH SNSL L+F    ++  R++V A+ GG  R SGP DSKR +D  G+D+SAIRSN VRL
Sbjct: 61  LHKSNSLRLVFSFPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEFGLDVSAIRSNNVRL 120

Query: 121 IDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQK 180
           IDAQQNMVG+VSKAQAIQMA+DAELDLVVLSPDADPPVVRIMDY+KYRYE QKKKRGQQK
Sbjct: 121 IDAQQNMVGVVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQK 180

Query: 181 KSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIEL 240
           KSAATRMDLKELKMGYNIDQHDYSVRLKAA+KFLKDGDKVKVIVNLKGREN F+NIAIEL
Sbjct: 181 KSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIEL 240

Query: 241 IRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV 292
           IRRFQEE+GELATEEAKN RDRN+FIVL PNKAVLQKAQEPPK KD   VNEVSA V
Sbjct: 241 IRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNEVSAGV 297

[Close]

BLAST of CmoCh12G008540 vs. ExPASy TrEMBL
Match: A0A0A0LH34 (Translation initiation factor IF-3 OS=Cucumis sativus OX=3659 GN=Csa_2G036070 PE=3 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 1.0e-109
Identity = 227/300 (75.67%), Postives = 257/300 (85.67%), Query Frame = 0


Query: 1   MAGLTARFPFKPLLSHSSASPTTSAAA-----PSSSATATPIRTSISPLPLSSSSKSNAF 60
           MAGL+  FPFK LLS SSA+ TT++++     P+SS++ TP RTS   LP+SSS+ SNAF
Sbjct: 1   MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSN-SNAF 60

Query: 61  RFRLHNSNSLHLLFTTST----RSTVVAQYGGGSRPSGPADSKRFDDGLGVDISAIRSNT 120
           +FRLH SNSL LLF++      R++V A+ GG  R SGP DSKR +D +G+DISAI+S  
Sbjct: 61  KFRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSIN 120

Query: 121 VRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRG 180
           VRLIDA+QNMVG+VSKAQAIQMA+DAELDLVV+SPDADPPVVRIMDY+KYRYE QKKKRG
Sbjct: 121 VRLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRG 180

Query: 181 QQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIA 240
           QQKKSAATRMDLKELKMGYNIDQHDYSVRLKAA+KFLKDGDKVKVIVNLKGREN F+NIA
Sbjct: 181 QQKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIA 240

Query: 241 IELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV 292
           IELIRRFQEE+GELATEEAKN RDRN+FIVL PNKAVLQKAQEPPK KD   VN VSASV
Sbjct: 241 IELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSASV 299

[Close]

BLAST of CmoCh12G008540 vs. TAIR 10
Match: AT4G30690.1 (Translation initiation factor 3 protein )

HSP 1 Score: 280.0 bits (715), Expect = 2.1e-75
Identity = 152/212 (71.70%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 82  GGGSRPSGP--ADSKRFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAEL 141
           GGGSR  G      K  +D   +DISAIRS TVRLID QQNM+G+VSK +A++ A+DAEL
Sbjct: 64  GGGSRFPGDRRGRQKESEDDDSLDISAIRSATVRLIDDQQNMIGLVSKEEAVRRAEDAEL 123

Query: 142 DLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSV 201
           DLV+LSPDADPPVVR+MDYSKYRYEQQK+K+ QQKK+  TRMDLKELKMGYNIDQHDYSV
Sbjct: 124 DLVILSPDADPPVVRMMDYSKYRYEQQKRKKEQQKKT--TRMDLKELKMGYNIDQHDYSV 183

Query: 202 RLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMF 261
           R++AARKFL+DGDKVKVIVN+KGREN F+NIAIEL+RRFQ EIGEL TEE+KN RDRN+F
Sbjct: 184 RMRAARKFLQDGDKVKVIVNMKGRENEFRNIAIELLRRFQTEIGELGTEESKNFRDRNLF 243

Query: 262 IVLAPNKAVLQKAQE-PPKVKDNLVVNEVSAS 291
           IVL PNK V++K QE PPK K     ++VSA+
Sbjct: 244 IVLVPNKEVIRKVQEPPPKKKKKPADDKVSAA 273

[Close]

BLAST of CmoCh12G008540 vs. TAIR 10
Match: AT2G24060.1 (Translation initiation factor 3 protein )

HSP 1 Score: 279.3 bits (713), Expect = 3.6e-75
Identity = 154/217 (70.97%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 82  GGGSRPSGPADSKR-------FDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMA 141
           GGG R SG  D++R        D+ L  DIS+IRS TVRLID QQNM+G+VSK +A++MA
Sbjct: 67  GGGYRFSG--DNRRGRPKEAEIDEAL--DISSIRSATVRLIDGQQNMLGLVSKDEAVRMA 126

Query: 142 DDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQ 201
           DDAELDLV+LSPDADPPVV++MDYSKYRYEQQK+K+ QQKK+  TRMDLKELKMGYNIDQ
Sbjct: 127 DDAELDLVILSPDADPPVVKMMDYSKYRYEQQKRKKDQQKKT--TRMDLKELKMGYNIDQ 186

Query: 202 HDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLR 261
           HDYSVRL+AA+KFL+DGDKVKVIV++KGREN F+NIAIEL+RRFQ EIGELATEE+KN R
Sbjct: 187 HDYSVRLRAAQKFLQDGDKVKVIVSMKGRENEFRNIAIELLRRFQTEIGELATEESKNFR 246

Query: 262 DRNMFIVLAPNKAVLQKAQEPP-KVKDNLVVNEVSAS 291
           DRNMFI+L PNK +++K QEPP + K     NE SAS
Sbjct: 247 DRNMFIILVPNKEMIRKPQEPPTRKKKKTAENEASAS 277

[Close]

BLAST of CmoCh12G008540 vs. TAIR 10
Match: AT4G30690.2 (Translation initiation factor 3 protein )

HSP 1 Score: 225.3 bits (573), Expect = 6.2e-59
Identity = 128/212 (60.38%), Postives = 151/212 (71.23%), Query Frame = 0


Query: 82  GGGSRPSGP--ADSKRFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAEL 141
           GGGSR  G      K  +D   +DISAIRS TVRLID QQNM+G+VSK +A++ A+DAEL
Sbjct: 64  GGGSRFPGDRRGRQKESEDDDSLDISAIRSATVRLIDDQQNMIGLVSKEEAVRRAEDAEL 123

Query: 142 DLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSV 201
           DLV+LSPDADPPVVR+MDYS                              YNIDQHDYSV
Sbjct: 124 DLVILSPDADPPVVRMMDYS------------------------------YNIDQHDYSV 183

Query: 202 RLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMF 261
           R++AARKFL+DGDKVKVIVN+KGREN F+NIAIEL+RRFQ EIGEL TEE+KN RDRN+F
Sbjct: 184 RMRAARKFLQDGDKVKVIVNMKGRENEFRNIAIELLRRFQTEIGELGTEESKNFRDRNLF 243

Query: 262 IVLAPNKAVLQKAQE-PPKVKDNLVVNEVSAS 291
           IVL PNK V++K QE PPK K     ++VSA+
Sbjct: 244 IVLVPNKEVIRKVQEPPPKKKKKPADDKVSAA 245

[Close]

BLAST of CmoCh12G008540 vs. TAIR 10
Match: AT1G34360.1 (translation initiation factor 3 (IF-3) family protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-07
Identity = 46/146 (31.51%), Postives = 78/146 (53.42%), Query Frame = 0


Query: 107 IRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQ 166
           I  + VRL+  + + V  VS  +A++ A + + DLV +  DA PPV +I+ YS   Y++ 
Sbjct: 90  ITGDYVRLVSEEGHCV--VSLREALRRAKELQCDLVEVQRDAKPPVCKIVKYSLELYKKA 149

Query: 167 K--KKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVI-VNLKGR 226
           K  K+R + K++ A R D+KE++    I+  D   +   A K ++ G +VK + V  K +
Sbjct: 150 KVGKERAKAKRAEAIRPDIKEIRFTPKIEAKDLKFKSDQALKLMESGYRVKCLAVPDKDK 209

Query: 227 ENAFK-NIAIELIRRFQEEIGELATE 249
               +    +EL+ RF   IG+   E
Sbjct: 210 HKELEPEKLLELLFRFTCFIGDALVE 233

The following BLAST results are available for this feature:

BLAST of CmoCh12G008540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94B52	3.0e-74	71.70	Translation initiation factor IF3-4, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
O82234	5.1e-74	70.97	Translation initiation factor IF3-2, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
B0JKQ1	1.4e-31	44.72	Translation initiation factor IF-3 OS=Microcystis aeruginosa (strain NIES-843) O...	[more]
Q8R9C2	3.1e-31	45.34	Translation initiation factor IF-3 OS=Caldanaerobacter subterraneus subsp. tengc...	[more]
Q8YNE3	5.4e-31	46.01	Translation initiation factor IF-3 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / ...	[more]

BLAST of CmoCh12G008540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCR3	2.3e-149	100.00	Translation initiation factor IF-3 OS=Cucurbita moschata OX=3662 GN=LOC111444202...	[more]
A0A6J1I0C0	5.0e-141	95.90	Translation initiation factor IF-3 OS=Cucurbita maxima OX=3661 GN=LOC111468564 P...	[more]
A0A6J1DYM5	7.1e-119	82.19	Translation initiation factor IF-3 OS=Momordica charantia OX=3673 GN=LOC11102471...	[more]
A0A1S3BV82	5.8e-113	77.78	Translation initiation factor IF-3 OS=Cucumis melo OX=3656 GN=LOC103493630 PE=3 ...	[more]
A0A0A0LH34	1.0e-109	75.67	Translation initiation factor IF-3 OS=Cucumis sativus OX=3659 GN=Csa_2G036070 PE...	[more]

BLAST of CmoCh12G008540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30690.1	2.1e-75	71.70	Translation initiation factor 3 protein	[more]
AT2G24060.1	3.6e-75	70.97	Translation initiation factor 3 protein	[more]
AT4G30690.2	6.2e-59	60.38	Translation initiation factor 3 protein	[more]
AT1G34360.1	1.5e-07	31.51	translation initiation factor 3 (IF-3) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001288	Translation initiation factor 3	TIGRFAM	TIGR00168	TIGR00168	coord: 106..266 e-value: 1.6E-48 score: 162.4
IPR001288	Translation initiation factor 3	PANTHER	PTHR10938	TRANSLATION INITIATION FACTOR IF-3	coord: 56..288
IPR001288	Translation initiation factor 3	HAMAP	MF_00080	IF_3	coord: 93..267 score: 23.100948
IPR036788	Translation initiation factor 3 (IF-3), C-terminal domain superfamily	GENE3D	3.30.110.10		coord: 177..273 e-value: 1.1E-25 score: 91.4
IPR036788	Translation initiation factor 3 (IF-3), C-terminal domain superfamily	SUPERFAMILY	55200	Translation initiation factor IF3, C-terminal domain	coord: 181..266
IPR019814	Translation initiation factor 3, N-terminal	PFAM	PF05198	IF3_N	coord: 106..170 e-value: 3.1E-26 score: 91.5
IPR019815	Translation initiation factor 3, C-terminal	PFAM	PF00707	IF3_C	coord: 182..265 e-value: 4.6E-25 score: 87.4
IPR036787	Translation initiation factor 3 (IF-3), N-terminal domain superfamily	GENE3D	3.10.20.80		coord: 105..174 e-value: 4.6E-28 score: 99.1
IPR036787	Translation initiation factor 3 (IF-3), N-terminal domain superfamily	SUPERFAMILY	54364	Translation initiation factor IF3, N-terminal domain	coord: 106..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..48
None	No IPR available	PANTHER	PTHR10938:SF6	TRANSLATION INITIATION FACTOR IF-3	coord: 56..288
IPR019813	Translation initiation factor 3, conserved site	PROSITE	PS00938	IF3	coord: 154..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G008540.1	CmoCh12G008540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032790	ribosome disassembly
biological_process	GO:0006413	translational initiation
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003743	translation initiation factor activity