CmoCh12G008000 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G008000
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein .
LocationCmo_Chr12: 6911154 .. 6912506 (-)
RNA-Seq ExpressionCmoCh12G008000
SyntenyCmoCh12G008000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCAATATCCGAAACCCCCAATTTTGTTTCAACTTCTTTTCCAGTGACGGGGGATTTTGGGGAGGTTTTAGGGTTCGTAGTTCACAGAATTCAATCGGGAATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGGTTCCGCCGCTAGAAATGTTTCCGTTTCATCGGTGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGCTGCTTGCTTCTTTAGATTCATCTTCTTGTTTTGATGTTACTTTTTTTTTTTTCCTCTTAATTTCATTCTGATGCGATTTTTTAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTTAGTCCTCTTCTGTTTCTTGCTTCCTAATCATTGCTGTTTTATTTTTCCAGTTGATTTCAGTCACATTGAATTTTAGTACTAGTTAACTATATTAAGTTATAGAAATAGTTCCTCGGAATGTATATTCATGCAGCCAAAAAAATTTAGGCCTAGATTGCTAGCCAATTAAAATCGACTTCCATACTACCATACCACCGTTCAGTTAGCTGAAACGCTGAATTTCATTATTTGGTATTGAGTATATTTTAGGATACAGAATGATAAGAAAAGCTACAATCGCACAAGAGTATTTTCAATTTCTATTTTACTACTTCCTATCAAAATGGCGAACGATCTCGATTATAGAAAGTAAGATGCACTGTTCATTTTGTGATCGGAAGTGAGGAGCTATCTGGATTAGAGTGTACTGTCTACAATGTAACCATGATCATGTTCAGCATCCTGGATGTGATAGAAATTATGCCTTGCGTAATGTTTATCATGTACTGAATGTGGACCAAACGAGAGGAAAGTGGTCAATGCTGGTGAATGATTGTCAGGAATAAAATCAGAGGGTGTTCTTTAGAGTGGACAATGGTCAATTTTCATGAGACCTTAATGTTTCCCTGTTTTATGACTTGTAAAATAACTCTGCAAGTTGGTTCAAATAGATTACTTATGTGTGACTTCTCTAAATTGATGAAAATTAATGACTTCAATGTTATCAGTCTGATGGAACCTCATGTTCTTCATCTCTTTGGCCCCTTGAAGGACGTCTGCACGATTATGTTGAGTACTGAGCTCAGTCTTTTTCTGATGGCTCTCTTGGGAGTAAATCCTTTAGATAATTGATGCAATAAAATAGTTTCTTCCGTCAGTCAATGTTCATATTAACTCATTTCTAGCAAATTTGACTCC

mRNA sequence

AAATCAATATCCGAAACCCCCAATTTTGTTTCAACTTCTTTTCCAGTGACGGGGGATTTTGGGGAGGTTTTAGGGTTCGTAGTTCACAGAATTCAATCGGGAATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGGTTCCGCCGCTAGAAATGTTTCCGTTTCATCGGTGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTTAGTCCTCTTCTGTTTCTTGCTTCCTAATCATTGCTGTTTTATTTTTCCAGTTGATTTCAGTCACATTGAATTTTAGTACTAGTTAACTATATTAAGTTATAGAAATAGTTCCTCGGAATGTATATTCATGCAGCCAAAAAAATTTAGGCCTAGATTGCTAGCCAATTAAAATCGACTTCCATACTACCATACCACCGTTCAGTTAGCTGAAACGCTGAATTTCATTATTTGGTATTGAGTATATTTTAGGATACAGAATGATAAGAAAAGCTACAATCGCACAAGAGTATTTTCAATTTCTATTTTACTACTTCCTATCAAAATGGCGAACGATCTCGATTATAGAAAGTAAGATGCACTGTTCATTTTGTGATCGGAAGTGAGGAGCTATCTGGATTAGAGTGTACTGTCTACAATGTAACCATGATCATGTTCAGCATCCTGGATGTGATAGAAATTATGCCTTGCGTAATGTTTATCATGTACTGAATGTGGACCAAACGAGAGGAAAGTGGTCAATGCTGGTGAATGATTGTCAGGAATAAAATCAGAGGGTGTTCTTTAGAGTGGACAATGGTCAATTTTCATGAGACCTTAATGTTTCCCTGTTTTATGACTTGTAAAATAACTCTGCAAGTTGGTTCAAATAGATTACTTATGTGTGACTTCTCTAAATTGATGAAAATTAATGACTTCAATGTTATCAGTCTGATGGAACCTCATGTTCTTCATCTCTTTGGCCCCTTGAAGGACGTCTGCACGATTATGTTGAGTACTGAGCTCAGTCTTTTTCTGATGGCTCTCTTGGGAGTAAATCCTTTAGATAATTGATGCAATAAAATAGTTTCTTCCGTCAGTCAATGTTCATATTAACTCATTTCTAGCAAATTTGACTCC

Coding sequence (CDS)

ATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGGTTCCGCCGCTAGAAATGTTTCCGTTTCATCGGTGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTTAG

Protein sequence

MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQG
Homology
BLAST of CmoCh12G008000 vs. ExPASy TrEMBL
Match: A0A6J1FBA6 (uncharacterized protein LOC111443881 OS=Cucurbita moschata OX=3662 GN=LOC111443881 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.9e-33
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELS 60
          MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELS
Sbjct: 1  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELS 60

Query: 61 SLRPIHSAIASACLVSELPAEASASVQG 89
          SLRPIHSAIASACLVSELPAEASASVQG
Sbjct: 61 SLRPIHSAIASACLVSELPAEASASVQG 88

BLAST of CmoCh12G008000 vs. ExPASy TrEMBL
Match: A0A6J1HY48 (uncharacterized protein LOC111468540 OS=Cucurbita maxima OX=3661 GN=LOC111468540 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.9e-31
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELS 60
          MAASVALRSSCLRAISRIST S+ARNVSVSS LPSVRSSFVSRRISISPHSLRLLRRELS
Sbjct: 1  MAASVALRSSCLRAISRISTASSARNVSVSSALPSVRSSFVSRRISISPHSLRLLRRELS 60

Query: 61 SLRPIHSAIASACLVSELPAEASASVQG 89
          SLRPIHSAIASACLVSELPAEASASVQG
Sbjct: 61 SLRPIHSAIASACLVSELPAEASASVQG 88

BLAST of CmoCh12G008000 vs. ExPASy TrEMBL
Match: A0A6J1DG34 (uncharacterized protein LOC111020511 OS=Momordica charantia OX=3673 GN=LOC111020511 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-27
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 2  AASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISP-HSLRLLRRELS 61
          +ASVALRSSCLRAI RIST SAARNVSVSSVLPS+RSSFV RR SISP HSLRLLRRELS
Sbjct: 4  SASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSLRLLRRELS 63

Query: 62 SLRPIHSAIASACLVSELPAEASASVQG 89
          SLRP+HSAIASACLVSELPAEASASV+G
Sbjct: 64 SLRPVHSAIASACLVSELPAEASASVEG 91

BLAST of CmoCh12G008000 vs. ExPASy TrEMBL
Match: A0A2N9FKA7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15372 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.8e-10
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 1  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISI-SPHSLRLLRREL 60
          MAASVA RS  +RA+ R ST S++     S  LPS  S+FV  R  I SP  LRLLRREL
Sbjct: 1  MAASVAGRSILVRALCRASTNSSSATRRFS--LPSRSSNFVPHRSPIPSPSPLRLLRREL 60

Query: 61 SSLRPIHSAIASACLVSELPAEASASVQ 88
          SSL+P+HS IASACLVS+LP+EAS S +
Sbjct: 61 SSLQPVHSVIASACLVSKLPSEASTSTE 86

BLAST of CmoCh12G008000 vs. ExPASy TrEMBL
Match: A0A7N2KM76 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.1e-10
Identity = 53/90 (58.89%), Postives = 62/90 (68.89%), Query Frame = 0

Query: 1  MAASVALRSSCLRAISR--ISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRE 60
          MAASVA RS+ +RA  R  +S  SA R  S    LP   S+FV  R   S   LRLLRRE
Sbjct: 1  MAASVAGRSTLVRAFCRASMSPSSATRRFS----LPPRMSNFVPHRSPTSSPPLRLLRRE 60

Query: 61 LSSLRPIHSAIASACLVSELPAEASASVQG 89
          LSSL+P+HSAIASACLVS+LP+EAS S +G
Sbjct: 61 LSSLQPVHSAIASACLVSKLPSEASTSTEG 86

BLAST of CmoCh12G008000 vs. TAIR 10
Match: AT2G27775.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 6.0e-05
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 0

Query: 2  AASVALRSSC-LRAISRISTGSAARNVSVSSVLPSV-RSSFVSRRISISPH----SLRLL 61
          A  +A RS+  +R+I+R +T   ARN+  S   PSV   +F S R + S        RLL
Sbjct: 3  AIGIASRSATFMRSINRTAT---ARNLISSRARPSVPNPNFTSPRFNTSSRIEGSVPRLL 62

Query: 62 RRELSSLRPIHSAIASACLVSELPAEASA 85
          RRELS+ +P HS IA+ACLVS+LP++ ++
Sbjct: 63 RRELSTQQPFHSTIAAACLVSKLPSDVTS 88

BLAST of CmoCh12G008000 vs. TAIR 10
Match: AT2G27775.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 6.0e-05
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 0

Query: 2  AASVALRSSC-LRAISRISTGSAARNVSVSSVLPSV-RSSFVSRRISISPH----SLRLL 61
          A  +A RS+  +R+I+R +T   ARN+  S   PSV   +F S R + S        RLL
Sbjct: 3  AIGIASRSATFMRSINRTAT---ARNLISSRARPSVPNPNFTSPRFNTSSRIEGSVPRLL 62

Query: 62 RRELSSLRPIHSAIASACLVSELPAEASA 85
          RRELS+ +P HS IA+ACLVS+LP++ ++
Sbjct: 63 RRELSTQQPFHSTIAAACLVSKLPSDVTS 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FBA68.9e-33100.00uncharacterized protein LOC111443881 OS=Cucurbita moschata OX=3662 GN=LOC1114438... [more]
A0A6J1HY482.9e-3196.59uncharacterized protein LOC111468540 OS=Cucurbita maxima OX=3661 GN=LOC111468540... [more]
A0A6J1DG342.5e-2789.77uncharacterized protein LOC111020511 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A2N9FKA74.8e-1060.23Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15372 PE=4 SV=1[more]
A0A7N2KM768.1e-1058.89Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G27775.16.0e-0543.82FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT2G27775.26.0e-0543.82FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G008000.1CmoCh12G008000.1mRNA