CmoCh12G008000 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAATCAATATCCGAAACCCCCAATTTTGTTTCAACTTCTTTTCCAGTGACGGGGGATTTTGGGGAGGTTTTAGGGTTCGTAGTTCACAGAATTCAATCGGGAATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGGTTCCGCCGCTAGAAATGTTTCCGTTTCATCGGTGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGCTGCTTGCTTCTTTAGATTCATCTTCTTGTTTTGATGTTACTTTTTTTTTTTTCCTCTTAATTTCATTCTGATGCGATTTTTTAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTTAGTCCTCTTCTGTTTCTTGCTTCCTAATCATTGCTGTTTTATTTTTCCAGTTGATTTCAGTCACATTGAATTTTAGTACTAGTTAACTATATTAAGTTATAGAAATAGTTCCTCGGAATGTATATTCATGCAGCCAAAAAAATTTAGGCCTAGATTGCTAGCCAATTAAAATCGACTTCCATACTACCATACCACCGTTCAGTTAGCTGAAACGCTGAATTTCATTATTTGGTATTGAGTATATTTTAGGATACAGAATGATAAGAAAAGCTACAATCGCACAAGAGTATTTTCAATTTCTATTTTACTACTTCCTATCAAAATGGCGAACGATCTCGATTATAGAAAGTAAGATGCACTGTTCATTTTGTGATCGGAAGTGAGGAGCTATCTGGATTAGAGTGTACTGTCTACAATGTAACCATGATCATGTTCAGCATCCTGGATGTGATAGAAATTATGCCTTGCGTAATGTTTATCATGTACTGAATGTGGACCAAACGAGAGGAAAGTGGTCAATGCTGGTGAATGATTGTCAGGAATAAAATCAGAGGGTGTTCTTTAGAGTGGACAATGGTCAATTTTCATGAGACCTTAATGTTTCCCTGTTTTATGACTTGTAAAATAACTCTGCAAGTTGGTTCAAATAGATTACTTATGTGTGACTTCTCTAAATTGATGAAAATTAATGACTTCAATGTTATCAGTCTGATGGAACCTCATGTTCTTCATCTCTTTGGCCCCTTGAAGGACGTCTGCACGATTATGTTGAGTACTGAGCTCAGTCTTTTTCTGATGGCTCTCTTGGGAGTAAATCCTTTAGATAATTGATGCAATAAAATAGTTTCTTCCGTCAGTCAATGTTCATATTAACTCATTTCTAGCAAATTTGACTCC AAATCAATATCCGAAACCCCCAATTTTGTTTCAACTTCTTTTCCAGTGACGGGGGATTTTGGGGAGGTTTTAGGGTTCGTAGTTCACAGAATTCAATCGGGAATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGGTTCCGCCGCTAGAAATGTTTCCGTTTCATCGGTGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTTAGTCCTCTTCTGTTTCTTGCTTCCTAATCATTGCTGTTTTATTTTTCCAGTTGATTTCAGTCACATTGAATTTTAGTACTAGTTAACTATATTAAGTTATAGAAATAGTTCCTCGGAATGTATATTCATGCAGCCAAAAAAATTTAGGCCTAGATTGCTAGCCAATTAAAATCGACTTCCATACTACCATACCACCGTTCAGTTAGCTGAAACGCTGAATTTCATTATTTGGTATTGAGTATATTTTAGGATACAGAATGATAAGAAAAGCTACAATCGCACAAGAGTATTTTCAATTTCTATTTTACTACTTCCTATCAAAATGGCGAACGATCTCGATTATAGAAAGTAAGATGCACTGTTCATTTTGTGATCGGAAGTGAGGAGCTATCTGGATTAGAGTGTACTGTCTACAATGTAACCATGATCATGTTCAGCATCCTGGATGTGATAGAAATTATGCCTTGCGTAATGTTTATCATGTACTGAATGTGGACCAAACGAGAGGAAAGTGGTCAATGCTGGTGAATGATTGTCAGGAATAAAATCAGAGGGTGTTCTTTAGAGTGGACAATGGTCAATTTTCATGAGACCTTAATGTTTCCCTGTTTTATGACTTGTAAAATAACTCTGCAAGTTGGTTCAAATAGATTACTTATGTGTGACTTCTCTAAATTGATGAAAATTAATGACTTCAATGTTATCAGTCTGATGGAACCTCATGTTCTTCATCTCTTTGGCCCCTTGAAGGACGTCTGCACGATTATGTTGAGTACTGAGCTCAGTCTTTTTCTGATGGCTCTCTTGGGAGTAAATCCTTTAGATAATTGATGCAATAAAATAGTTTCTTCCGTCAGTCAATGTTCATATTAACTCATTTCTAGCAAATTTGACTCC ATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGGTTCCGCCGCTAGAAATGTTTCCGTTTCATCGGTGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTTAG MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQG Homology
BLAST of CmoCh12G008000 vs. ExPASy TrEMBL
Match: A0A6J1FBA6 (uncharacterized protein LOC111443881 OS=Cucurbita moschata OX=3662 GN=LOC111443881 PE=4 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 8.9e-33 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of CmoCh12G008000 vs. ExPASy TrEMBL
Match: A0A6J1HY48 (uncharacterized protein LOC111468540 OS=Cucurbita maxima OX=3661 GN=LOC111468540 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 2.9e-31 Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0
BLAST of CmoCh12G008000 vs. ExPASy TrEMBL
Match: A0A6J1DG34 (uncharacterized protein LOC111020511 OS=Momordica charantia OX=3673 GN=LOC111020511 PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 2.5e-27 Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0
BLAST of CmoCh12G008000 vs. ExPASy TrEMBL
Match: A0A2N9FKA7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15372 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 4.8e-10 Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 0
BLAST of CmoCh12G008000 vs. ExPASy TrEMBL
Match: A0A7N2KM76 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 8.1e-10 Identity = 53/90 (58.89%), Postives = 62/90 (68.89%), Query Frame = 0
BLAST of CmoCh12G008000 vs. TAIR 10
Match: AT2G27775.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 44.3 bits (103), Expect = 6.0e-05 Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 0
BLAST of CmoCh12G008000 vs. TAIR 10
Match: AT2G27775.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 44.3 bits (103), Expect = 6.0e-05 Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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