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CmoCh12G007680 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAACTCGATAAACTGGAGGATGATTCTCGGGTTGAACTAGGTAAGCTAGATGGGATGAGAAGAAGGTCAAGCTACGCTCCTTTTCCTATGGCTATGGATTCTTTGTCCTCTCGCAACTTACTTACTCATTCACCTGTCTATCGGTCTCACTCGCTCCTTCACCTCGGTCGGCTTCTTTCTCTTCTCCTGACCCTGATTGAATTGACCAAGGTAAATAGGTTGGTTCAGTAGCTCTTTGATTGAAGGAACAGTAAGAACTCCTTATTCATGAGCCAGATAGATAGATTCCACTCTTTCAGAAATAGGCAGGATGAGAAGAAACTCTTGTGTCCCCGGCCGACCTTGTCTGACTGCTTGCTTGGCTCATTCACCTATCGGTTTCACAATTCCATTTCCTGCCCCTATATATTATTTATTCTGTAACAGTAAGGGAAACACCTTAACTACTGAACCCGAGCCTATGTTATATTCTTACACTGCAGCTAATGAATTAACTCTTGAACTGTAAACTCATTCACCTATCGGTTTCACAGCTTCGCACCTTTTCGATTTATTCTCCTGTAAACACTCCTTATGAATGATCGTTCACTATCAGTCAAGACTATAGAAGAATCAATGAGAGTGAACTGTCAGGAAAGACTCAAGATTCCTTCTTGATCTTGATCTTCCCCTTCAAGTGTTGAAAGTCAAGACGAAACTCAAGATTCATTCTCCTTCACTCAATCACTTGTCCCTTCCTTCTTTTACTCAGTCTTTCACAAGGTAAAGCATATTCAGTAGCTCTTTTCTTGAACTGCTCTTGATCCTTCTTCTTGTAAACAAAGAGAAAGACTCCTTAATCATGAGAGTTTACAGTGAGGGTAGAGGAAAGACTATCGATGAATGAGACGTAACCCGCATCGAGAGCTACTTCACCTACTTATTAATGAGAAAGAAGAGTAAGTCAAGAAAGATCAGCTCATTCACCTGAACCTGAAGGAAAGAAAGAAAAAGAATCCTCTATTCCTTCGGTAAAGCTATTTGATTTGAAGAACCGGAACAAAGAAAGAAGCAAGACAAGATGACTTATCCTTCTCCTATTGATTTCACTCTATAAAGCATATTCTGTTTCAGTAGCTCTTTTCTTTCCTCTCGCTTCAAACACTGGGTAAGTAAACAGATAGGATAGGCTGGCTGGCTGAGATTCCCTCATTCCCTTCAAAGGCTCTTTCACGAGGTAAATAGGTGGGTTCAGTATCTTATCTCTTTTCTTTCACTCATTTGATGATCTTGGCGCCGTCTTCGTCTTTGTGTTCTTCTTCGTTCTCCCGGCGTTCTAACTCGTCGATTACTTTGTATGACCATCGAGAAACTTCTTTTTGGATTTGTCTTAGTCCAATCGAGTTTTGAGGACTTGCTTTATCGTTGGTACTGGTTCTTCTTTCTCTATCCTTATTCTATATAAACGCCCAGTGAGTTTGTAGCAGCCGGGAAACTCCTTATTTTCGTGGGAGCTATAAATGTTTTAATCATATTTTCTGTGATGTTAATGAAGGGTGAAGAATATTCCTTTGATTTGAATCTTTGGACGGACTGTTGGGAATGGAGTGACTTTTCTTTCTTGTCCAAGTCTTTTTGTTTCACTAATGACTACTATTGTAGATACGTAATGGTATGAGATTATTTGGACTAGAAGATCAACCGTGATTCGTCAGCCTTAATAAGTAATAGTGTCAACAAATTGGAATTTCTTTATCAACGTTTTTCTTCCATTTTCACTAATTTCGATCATTCTTTTAGCAGCTTTCTTTGATTGGCGCAATTGGCGTGGCTCGACAGTAATCAATCTTTAGTTAGAAATATCATAAATGCAACTTTGTTCTATGTTATGGCACACATTCCCCTTCAATTCTATTTTGAGATTCTTTCTGTCTAAAAGCTAAATTCTTTTATTCGATCGATTACCAATATATTCCCTTGTTCTGTACTTTTTTGGAATCTATTACATTTTTGTTAATATTTCAATGAATCGGAATTTCTAAGGAGTTGGTGAATCATGCTCGAACATGTCCTTATTCTAAGTACCTATTTCTTTTCTATCGGTATCTATGGATTGATCATGAGCCTAAATATGGTTAGGGCCTTTATGTGTCTTGAGCTTATACATGATGCAGTGAATATGAATTTCGTACCATTTTCTTGATAGTCGCCAAAGGGAATATTTGATGAATTTTGGTTATAGTTATTGCACTGAAGCAGCTATTGGCCCAGCTATTCTTTCGTCAATTTCTCGTAACAGAAAAGTCGTATCAATCAATCTTTTTGTGGAATAAGTAGTAGTAGTAGTATTTCTTTCTCAGATAAATTCGGATATGAATCAAGTCAAATTATCCGTATGATACGTAATCCATGATCATGTTTGCGAAAACGTCAAAAATCAAAGTATCTTGGTCCTATCGCATGAGTTAATCTGAAAGTAGGTAGATTGATTATCAAAATTCTGATCAATTATGGAGTAGGATATAGAATTCATTTACAAATGGACTCGATCGTATAGTCAATCATTCTAGATCGAATGTCACAGTCAGTAAAGATTTATGATACATGTATAGGGTGTACTCAATGTCTCCGAGCTTGCCCCACATTACAAATGAGACCTTGGGGCAGATGTAAAGCTAAGCAAATAGCTTCGGCTCTACAAGAAGAGAAGACTGTCTTGGTTGTAAGAGATGTGAATCTGCCTGTCGAATTTCTTGAGTCTTCCCCTTTATTTATGGCATGAAAGAACTCGAAGCATGGGTCTAGCTTATTGATACGATCTCGAAAAGCCCCCTTGAATCATCTATTTTCTTTCATTCCTTTTTACCGACAAAAACTCATGCTCTAAAATCAATATACATATATATCTGTTTTTTTAGTCCAAGTGTCTCTTGGTTAAGAAGAGTTGTAGTTTTGCCAATATTTGCGGGTTTCTGACTTTTCTTTCTTTTTCCCTCATACAGGAAATAAAGTAATGAGCTGGTATACGATAGGATCTGTGTATTCGAGCTCCTTCTAACAACCAACCTATGCATTTTGTTATCATTTCGAATTAGACGATCCATTAATGGAACTGACAAAGGATTAGAAATCTATCCCTTGTTTTGGATTTTGACTCGAGATTTGGAATTGCCTTTCCATAGGACCTATTTGACTGACGGGGTTTATCACCACTTTAGCTACTTTAATGGCTTGCCCAGTTACTCGAGATTCCAGATTCTTCTATTTTCTAATCTTAGCAATGTATAGCGATCAAATAGGATCATTTTCTGCTCTAGACCTTTGACTATTTTTTCTCATGTGGGAGTTAGAATGAATTCCCGGTTATCTACTTCTCTCGATGTGGGGAGGAAAGAAAGAGGGTTGTATTCAGCTCCAAAGAAAGTGGATTTTGTACACTGCAAGGAGGTTCCATTCATTTGTTAATGGTAGTTCTGGGTATCGGTTTATATGGTTCTATCTAACTAATGAACCAACGTTCTATTTGGAAACATCGACTAATCAATCCTATTCTATAGCACTGGAAATAATATTCAATCTATATCGGATTTCTTATTGCTTTTGCTATTAAATCACCGATTATACCCTGTACCCAGAGGCACATTAGAGTACTTGTATGCTTCGAGCCGGAATCTTATTCAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGATTACCCCCCCGCCCATTCTCTTTTTTCACCTTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACTCGGGTCAAGGCAATTTCAAAACAAAGAATAGCTTATTCCTCCGTCTCTCATATATATGGGTTTCATCATTATAGGAATTTGTTTTATCTATATATAAGCAGGGACTGAATGGAGCTATTTGACAAATAATCTCTCATGGATTTCTTGGCGCTGCCCTTTTCTTTTCTTCTTGGCGGGAACAAGTTATGATAGAATACTTCTTGTTTATCTCGATGAAATGGGGGTAAAATGGCTATTAAAATTCCAAAAGGATGAACGACTTTGAGTATCTTATCGATGGGGCTTCCCTTGCATTGCCGGGTATGAGCAGTTTTGTTGCAGAATTCATAGTCATAATTACCAGCCAAAAATCTCTTGTAATGAGAAAAACACTAATTACTTTGGTACATGGCAATTGGAATCATATTAACTCCCATTTATTTATTATCTATCTTACGCCAGATGTTCTATGGATACAAGCTTTTTAA ATGGAACTCGATAAACTGGAGGATGATTCTCGGGTTGAACTAGGTAAGCTAGATGGGATGAGAAGAAGGTCAAGCTACGCTCCTTTTCCTATGGCTATGGATTCTTTGTCCTCTCGCAACTTACTTACTCATTCACCTGTCTATCGGTCTCACTCGCTCCTTCACCTCGGTCGGCTTCTTTCTCTTCTCCTGACCCTGATTGAATTGACCAAGATACGTAATGGGTGTACTCAATGTCTCCGAGCTTGCCCCACATTACAAATGAGACCTTGGGGCAGATGTAAAGCTAAGCAAATAGCTTCGGCTCTACAAGAAGAGAAGACTGTCTTGGTTTCCAAGTGTCTCTTGGTTAAGAAGAGTTGTAGTTTTGCCAATATTTGCGGCACTGGAAATAATATTCAATCTATATCGGATTTCTTATTGCTTTTGCTATTAAATCACCGATTATACCCTGTACCCAGAGGCACATTAGAGTACTTGTATGCTTCGAGCCGGAATCTTATTCAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGATTACCCCCCCGCCCATTCTCTTTTTTCACCTTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACTCGGGTCAAGGCAATTTCAAAACAAAGAATAGCTTATTCCTCCGGACTGAATGGAGCTATTTGACAAATAATCTCTCATGGATTTCTTGGCGCTGCCCTTTTCTTTTCTTCTTGGCGGGAACAAGTTATGATAGAATACTTCTTGTTTATCTCGATGAAATGGGGTATCTTATCGATGGGGCTTCCCTTGCATTGCCGGGTATGAGCAGTTTTGTTGCAGAATTCATAGTCATAATTACCAGCCAAAAATCTCTTGTAATGAGAAAAACACTAATTACTTTGGTACATGGCAATTGGAATCATATTAACTCCCATTTATTTATTATCTATCTTACGCCAGATGTTCTATGGATACAAGCTTTTTAA ATGGAACTCGATAAACTGGAGGATGATTCTCGGGTTGAACTAGGTAAGCTAGATGGGATGAGAAGAAGGTCAAGCTACGCTCCTTTTCCTATGGCTATGGATTCTTTGTCCTCTCGCAACTTACTTACTCATTCACCTGTCTATCGGTCTCACTCGCTCCTTCACCTCGGTCGGCTTCTTTCTCTTCTCCTGACCCTGATTGAATTGACCAAGATACGTAATGGGTGTACTCAATGTCTCCGAGCTTGCCCCACATTACAAATGAGACCTTGGGGCAGATGTAAAGCTAAGCAAATAGCTTCGGCTCTACAAGAAGAGAAGACTGTCTTGGTTTCCAAGTGTCTCTTGGTTAAGAAGAGTTGTAGTTTTGCCAATATTTGCGGCACTGGAAATAATATTCAATCTATATCGGATTTCTTATTGCTTTTGCTATTAAATCACCGATTATACCCTGTACCCAGAGGCACATTAGAGTACTTGTATGCTTCGAGCCGGAATCTTATTCAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGATTACCCCCCCGCCCATTCTCTTTTTTCACCTTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACTCGGGTCAAGGCAATTTCAAAACAAAGAATAGCTTATTCCTCCGGACTGAATGGAGCTATTTGACAAATAATCTCTCATGGATTTCTTGGCGCTGCCCTTTTCTTTTCTTCTTGGCGGGAACAAGTTATGATAGAATACTTCTTGTTTATCTCGATGAAATGGGGTATCTTATCGATGGGGCTTCCCTTGCATTGCCGGGTATGAGCAGTTTTGTTGCAGAATTCATAGTCATAATTACCAGCCAAAAATCTCTTGTAATGAGAAAAACACTAATTACTTTGGTACATGGCAATTGGAATCATATTAACTCCCATTTATTTATTATCTATCTTACGCCAGATGTTCTATGGATACAAGCTTTTTAA MELDKLEDDSRVELGKLDGMRRRSSYAPFPMAMDSLSSRNLLTHSPVYRSHSLLHLGRLLSLLLTLIELTKIRNGCTQCLRACPTLQMRPWGRCKAKQIASALQEEKTVLVSKCLLVKKSCSFANICGTGNNIQSISDFLLLLLLNHRLYPVPRGTLEYLYASSRNLIQNGSIWIGSDQYGLPPRPFSFFTLVDHSRHNSNNLCSFNSGQGNFKTKNSLFLRTEWSYLTNNLSWISWRCPFLFFLAGTSYDRILLVYLDEMGYLIDGASLALPGMSSFVAEFIVIITSQKSLVMRKTLITLVHGNWNHINSHLFIIYLTPDVLWIQAF Homology
BLAST of CmoCh12G007680 vs. ExPASy Swiss-Prot
Match: Q4VZL8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhD PE=2 SV=2) HSP 1 Score: 73.9 bits (180), Expect = 3.7e-12 Identity = 49/77 (63.64%), Postives = 52/77 (67.53%), Query Frame = 0
BLAST of CmoCh12G007680 vs. ExPASy Swiss-Prot
Match: Q0ZIW8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhD PE=3 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.1e-11 Identity = 47/77 (61.04%), Postives = 51/77 (66.23%), Query Frame = 0
BLAST of CmoCh12G007680 vs. ExPASy Swiss-Prot
Match: B1A984 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Carica papaya OX=3649 GN=ndhD PE=3 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 1.8e-11 Identity = 47/77 (61.04%), Postives = 50/77 (64.94%), Query Frame = 0
BLAST of CmoCh12G007680 vs. ExPASy Swiss-Prot
Match: Q68RV6 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Panax ginseng OX=4054 GN=ndhD PE=3 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 1.8e-11 Identity = 48/77 (62.34%), Postives = 50/77 (64.94%), Query Frame = 0
BLAST of CmoCh12G007680 vs. ExPASy Swiss-Prot
Match: Q09WW8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Morus indica OX=248361 GN=ndhD PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 2.4e-11 Identity = 46/77 (59.74%), Postives = 51/77 (66.23%), Query Frame = 0
BLAST of CmoCh12G007680 vs. ExPASy TrEMBL
Match: A0A498KQZ6 (Proton_antipo_M domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_037507 PE=4 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 8.2e-39 Identity = 103/167 (61.68%), Postives = 117/167 (70.06%), Query Frame = 0
BLAST of CmoCh12G007680 vs. ExPASy TrEMBL
Match: A0A650F2C7 (NADH-plastoquinone oxidoreductase subunit 4 OS=Senegalia senegal OX=138043 GN=ndhD PE=4 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 8.7e-33 Identity = 105/245 (42.86%), Postives = 125/245 (51.02%), Query Frame = 0
BLAST of CmoCh12G007680 vs. ExPASy TrEMBL
Match: A0A4Y6I5A8 (NADH-plastoquinone oxidoreductase subunit 4 OS=Teucrium mascatense OX=2172029 GN=ndhD PE=4 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 4.6e-26 Identity = 89/207 (43.00%), Postives = 107/207 (51.69%), Query Frame = 0
BLAST of CmoCh12G007680 vs. ExPASy TrEMBL
Match: A0A410PAA8 (NADH-plastoquinone oxidoreductase subunit 4 OS=Commiphora gileadensis OX=1700993 GN=ndhD PE=4 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 2.6e-16 Identity = 59/101 (58.42%), Postives = 65/101 (64.36%), Query Frame = 0
BLAST of CmoCh12G007680 vs. ExPASy TrEMBL
Match: A0A6H1XID1 (NADH-plastoquinone oxidoreductase subunit 4 OS=Lycoris aurea OX=152838 GN=ndhD PE=3 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 3.1e-14 Identity = 62/126 (49.21%), Postives = 69/126 (54.76%), Query Frame = 0
BLAST of CmoCh12G007680 vs. TAIR 10
Match: ATCG01050.1 (NADH-Ubiquinone/plastoquinone (complex I) protein ) HSP 1 Score: 68.2 bits (165), Expect = 1.4e-11 Identity = 44/77 (57.14%), Postives = 49/77 (63.64%), Query Frame = 0
BLAST of CmoCh12G007680 vs. TAIR 10
Match: ATCG01060.1 (iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding ) HSP 1 Score: 52.8 bits (125), Expect = 6.2e-07 Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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