CmoCh12G007680 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G007680
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionNAD(P)H-quinone oxidoreductase chain 4, chloroplastic
LocationCmo_Chr12: 6157904 .. 6162148 (+)
RNA-Seq ExpressionCmoCh12G007680
SyntenyCmoCh12G007680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTCGATAAACTGGAGGATGATTCTCGGGTTGAACTAGGTAAGCTAGATGGGATGAGAAGAAGGTCAAGCTACGCTCCTTTTCCTATGGCTATGGATTCTTTGTCCTCTCGCAACTTACTTACTCATTCACCTGTCTATCGGTCTCACTCGCTCCTTCACCTCGGTCGGCTTCTTTCTCTTCTCCTGACCCTGATTGAATTGACCAAGGTAAATAGGTTGGTTCAGTAGCTCTTTGATTGAAGGAACAGTAAGAACTCCTTATTCATGAGCCAGATAGATAGATTCCACTCTTTCAGAAATAGGCAGGATGAGAAGAAACTCTTGTGTCCCCGGCCGACCTTGTCTGACTGCTTGCTTGGCTCATTCACCTATCGGTTTCACAATTCCATTTCCTGCCCCTATATATTATTTATTCTGTAACAGTAAGGGAAACACCTTAACTACTGAACCCGAGCCTATGTTATATTCTTACACTGCAGCTAATGAATTAACTCTTGAACTGTAAACTCATTCACCTATCGGTTTCACAGCTTCGCACCTTTTCGATTTATTCTCCTGTAAACACTCCTTATGAATGATCGTTCACTATCAGTCAAGACTATAGAAGAATCAATGAGAGTGAACTGTCAGGAAAGACTCAAGATTCCTTCTTGATCTTGATCTTCCCCTTCAAGTGTTGAAAGTCAAGACGAAACTCAAGATTCATTCTCCTTCACTCAATCACTTGTCCCTTCCTTCTTTTACTCAGTCTTTCACAAGGTAAAGCATATTCAGTAGCTCTTTTCTTGAACTGCTCTTGATCCTTCTTCTTGTAAACAAAGAGAAAGACTCCTTAATCATGAGAGTTTACAGTGAGGGTAGAGGAAAGACTATCGATGAATGAGACGTAACCCGCATCGAGAGCTACTTCACCTACTTATTAATGAGAAAGAAGAGTAAGTCAAGAAAGATCAGCTCATTCACCTGAACCTGAAGGAAAGAAAGAAAAAGAATCCTCTATTCCTTCGGTAAAGCTATTTGATTTGAAGAACCGGAACAAAGAAAGAAGCAAGACAAGATGACTTATCCTTCTCCTATTGATTTCACTCTATAAAGCATATTCTGTTTCAGTAGCTCTTTTCTTTCCTCTCGCTTCAAACACTGGGTAAGTAAACAGATAGGATAGGCTGGCTGGCTGAGATTCCCTCATTCCCTTCAAAGGCTCTTTCACGAGGTAAATAGGTGGGTTCAGTATCTTATCTCTTTTCTTTCACTCATTTGATGATCTTGGCGCCGTCTTCGTCTTTGTGTTCTTCTTCGTTCTCCCGGCGTTCTAACTCGTCGATTACTTTGTATGACCATCGAGAAACTTCTTTTTGGATTTGTCTTAGTCCAATCGAGTTTTGAGGACTTGCTTTATCGTTGGTACTGGTTCTTCTTTCTCTATCCTTATTCTATATAAACGCCCAGTGAGTTTGTAGCAGCCGGGAAACTCCTTATTTTCGTGGGAGCTATAAATGTTTTAATCATATTTTCTGTGATGTTAATGAAGGGTGAAGAATATTCCTTTGATTTGAATCTTTGGACGGACTGTTGGGAATGGAGTGACTTTTCTTTCTTGTCCAAGTCTTTTTGTTTCACTAATGACTACTATTGTAGATACGTAATGGTATGAGATTATTTGGACTAGAAGATCAACCGTGATTCGTCAGCCTTAATAAGTAATAGTGTCAACAAATTGGAATTTCTTTATCAACGTTTTTCTTCCATTTTCACTAATTTCGATCATTCTTTTAGCAGCTTTCTTTGATTGGCGCAATTGGCGTGGCTCGACAGTAATCAATCTTTAGTTAGAAATATCATAAATGCAACTTTGTTCTATGTTATGGCACACATTCCCCTTCAATTCTATTTTGAGATTCTTTCTGTCTAAAAGCTAAATTCTTTTATTCGATCGATTACCAATATATTCCCTTGTTCTGTACTTTTTTGGAATCTATTACATTTTTGTTAATATTTCAATGAATCGGAATTTCTAAGGAGTTGGTGAATCATGCTCGAACATGTCCTTATTCTAAGTACCTATTTCTTTTCTATCGGTATCTATGGATTGATCATGAGCCTAAATATGGTTAGGGCCTTTATGTGTCTTGAGCTTATACATGATGCAGTGAATATGAATTTCGTACCATTTTCTTGATAGTCGCCAAAGGGAATATTTGATGAATTTTGGTTATAGTTATTGCACTGAAGCAGCTATTGGCCCAGCTATTCTTTCGTCAATTTCTCGTAACAGAAAAGTCGTATCAATCAATCTTTTTGTGGAATAAGTAGTAGTAGTAGTATTTCTTTCTCAGATAAATTCGGATATGAATCAAGTCAAATTATCCGTATGATACGTAATCCATGATCATGTTTGCGAAAACGTCAAAAATCAAAGTATCTTGGTCCTATCGCATGAGTTAATCTGAAAGTAGGTAGATTGATTATCAAAATTCTGATCAATTATGGAGTAGGATATAGAATTCATTTACAAATGGACTCGATCGTATAGTCAATCATTCTAGATCGAATGTCACAGTCAGTAAAGATTTATGATACATGTATAGGGTGTACTCAATGTCTCCGAGCTTGCCCCACATTACAAATGAGACCTTGGGGCAGATGTAAAGCTAAGCAAATAGCTTCGGCTCTACAAGAAGAGAAGACTGTCTTGGTTGTAAGAGATGTGAATCTGCCTGTCGAATTTCTTGAGTCTTCCCCTTTATTTATGGCATGAAAGAACTCGAAGCATGGGTCTAGCTTATTGATACGATCTCGAAAAGCCCCCTTGAATCATCTATTTTCTTTCATTCCTTTTTACCGACAAAAACTCATGCTCTAAAATCAATATACATATATATCTGTTTTTTTAGTCCAAGTGTCTCTTGGTTAAGAAGAGTTGTAGTTTTGCCAATATTTGCGGGTTTCTGACTTTTCTTTCTTTTTCCCTCATACAGGAAATAAAGTAATGAGCTGGTATACGATAGGATCTGTGTATTCGAGCTCCTTCTAACAACCAACCTATGCATTTTGTTATCATTTCGAATTAGACGATCCATTAATGGAACTGACAAAGGATTAGAAATCTATCCCTTGTTTTGGATTTTGACTCGAGATTTGGAATTGCCTTTCCATAGGACCTATTTGACTGACGGGGTTTATCACCACTTTAGCTACTTTAATGGCTTGCCCAGTTACTCGAGATTCCAGATTCTTCTATTTTCTAATCTTAGCAATGTATAGCGATCAAATAGGATCATTTTCTGCTCTAGACCTTTGACTATTTTTTCTCATGTGGGAGTTAGAATGAATTCCCGGTTATCTACTTCTCTCGATGTGGGGAGGAAAGAAAGAGGGTTGTATTCAGCTCCAAAGAAAGTGGATTTTGTACACTGCAAGGAGGTTCCATTCATTTGTTAATGGTAGTTCTGGGTATCGGTTTATATGGTTCTATCTAACTAATGAACCAACGTTCTATTTGGAAACATCGACTAATCAATCCTATTCTATAGCACTGGAAATAATATTCAATCTATATCGGATTTCTTATTGCTTTTGCTATTAAATCACCGATTATACCCTGTACCCAGAGGCACATTAGAGTACTTGTATGCTTCGAGCCGGAATCTTATTCAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGATTACCCCCCCGCCCATTCTCTTTTTTCACCTTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACTCGGGTCAAGGCAATTTCAAAACAAAGAATAGCTTATTCCTCCGTCTCTCATATATATGGGTTTCATCATTATAGGAATTTGTTTTATCTATATATAAGCAGGGACTGAATGGAGCTATTTGACAAATAATCTCTCATGGATTTCTTGGCGCTGCCCTTTTCTTTTCTTCTTGGCGGGAACAAGTTATGATAGAATACTTCTTGTTTATCTCGATGAAATGGGGGTAAAATGGCTATTAAAATTCCAAAAGGATGAACGACTTTGAGTATCTTATCGATGGGGCTTCCCTTGCATTGCCGGGTATGAGCAGTTTTGTTGCAGAATTCATAGTCATAATTACCAGCCAAAAATCTCTTGTAATGAGAAAAACACTAATTACTTTGGTACATGGCAATTGGAATCATATTAACTCCCATTTATTTATTATCTATCTTACGCCAGATGTTCTATGGATACAAGCTTTTTAA

mRNA sequence

ATGGAACTCGATAAACTGGAGGATGATTCTCGGGTTGAACTAGGTAAGCTAGATGGGATGAGAAGAAGGTCAAGCTACGCTCCTTTTCCTATGGCTATGGATTCTTTGTCCTCTCGCAACTTACTTACTCATTCACCTGTCTATCGGTCTCACTCGCTCCTTCACCTCGGTCGGCTTCTTTCTCTTCTCCTGACCCTGATTGAATTGACCAAGATACGTAATGGGTGTACTCAATGTCTCCGAGCTTGCCCCACATTACAAATGAGACCTTGGGGCAGATGTAAAGCTAAGCAAATAGCTTCGGCTCTACAAGAAGAGAAGACTGTCTTGGTTTCCAAGTGTCTCTTGGTTAAGAAGAGTTGTAGTTTTGCCAATATTTGCGGCACTGGAAATAATATTCAATCTATATCGGATTTCTTATTGCTTTTGCTATTAAATCACCGATTATACCCTGTACCCAGAGGCACATTAGAGTACTTGTATGCTTCGAGCCGGAATCTTATTCAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGATTACCCCCCCGCCCATTCTCTTTTTTCACCTTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACTCGGGTCAAGGCAATTTCAAAACAAAGAATAGCTTATTCCTCCGGACTGAATGGAGCTATTTGACAAATAATCTCTCATGGATTTCTTGGCGCTGCCCTTTTCTTTTCTTCTTGGCGGGAACAAGTTATGATAGAATACTTCTTGTTTATCTCGATGAAATGGGGTATCTTATCGATGGGGCTTCCCTTGCATTGCCGGGTATGAGCAGTTTTGTTGCAGAATTCATAGTCATAATTACCAGCCAAAAATCTCTTGTAATGAGAAAAACACTAATTACTTTGGTACATGGCAATTGGAATCATATTAACTCCCATTTATTTATTATCTATCTTACGCCAGATGTTCTATGGATACAAGCTTTTTAA

Coding sequence (CDS)

ATGGAACTCGATAAACTGGAGGATGATTCTCGGGTTGAACTAGGTAAGCTAGATGGGATGAGAAGAAGGTCAAGCTACGCTCCTTTTCCTATGGCTATGGATTCTTTGTCCTCTCGCAACTTACTTACTCATTCACCTGTCTATCGGTCTCACTCGCTCCTTCACCTCGGTCGGCTTCTTTCTCTTCTCCTGACCCTGATTGAATTGACCAAGATACGTAATGGGTGTACTCAATGTCTCCGAGCTTGCCCCACATTACAAATGAGACCTTGGGGCAGATGTAAAGCTAAGCAAATAGCTTCGGCTCTACAAGAAGAGAAGACTGTCTTGGTTTCCAAGTGTCTCTTGGTTAAGAAGAGTTGTAGTTTTGCCAATATTTGCGGCACTGGAAATAATATTCAATCTATATCGGATTTCTTATTGCTTTTGCTATTAAATCACCGATTATACCCTGTACCCAGAGGCACATTAGAGTACTTGTATGCTTCGAGCCGGAATCTTATTCAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGATTACCCCCCCGCCCATTCTCTTTTTTCACCTTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACTCGGGTCAAGGCAATTTCAAAACAAAGAATAGCTTATTCCTCCGGACTGAATGGAGCTATTTGACAAATAATCTCTCATGGATTTCTTGGCGCTGCCCTTTTCTTTTCTTCTTGGCGGGAACAAGTTATGATAGAATACTTCTTGTTTATCTCGATGAAATGGGGTATCTTATCGATGGGGCTTCCCTTGCATTGCCGGGTATGAGCAGTTTTGTTGCAGAATTCATAGTCATAATTACCAGCCAAAAATCTCTTGTAATGAGAAAAACACTAATTACTTTGGTACATGGCAATTGGAATCATATTAACTCCCATTTATTTATTATCTATCTTACGCCAGATGTTCTATGGATACAAGCTTTTTAA

Protein sequence

MELDKLEDDSRVELGKLDGMRRRSSYAPFPMAMDSLSSRNLLTHSPVYRSHSLLHLGRLLSLLLTLIELTKIRNGCTQCLRACPTLQMRPWGRCKAKQIASALQEEKTVLVSKCLLVKKSCSFANICGTGNNIQSISDFLLLLLLNHRLYPVPRGTLEYLYASSRNLIQNGSIWIGSDQYGLPPRPFSFFTLVDHSRHNSNNLCSFNSGQGNFKTKNSLFLRTEWSYLTNNLSWISWRCPFLFFLAGTSYDRILLVYLDEMGYLIDGASLALPGMSSFVAEFIVIITSQKSLVMRKTLITLVHGNWNHINSHLFIIYLTPDVLWIQAF
Homology
[Close]
BLAST of CmoCh12G007680 vs. ExPASy Swiss-Prot
Match: Q4VZL8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhD PE=2 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 3.7e-12
Identity = 49/77 (63.64%), Postives = 52/77 (67.53%), Query Frame = 0 

Query: 242 LFFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---I 301
           LFFLAGTSYDRI LVYLDEMG L             +  ASLALPGMS FVAE IV   I
Sbjct: 345 LFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGI 404

Query: 302 ITSQKSLVMRKTLITLV 303
           ITSQK L+M K +ITLV
Sbjct: 405 ITSQKYLLMTKMVITLV 421

[Close]
BLAST of CmoCh12G007680 vs. ExPASy Swiss-Prot
Match: Q0ZIW8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhD PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-11
Identity = 47/77 (61.04%), Postives = 51/77 (66.23%), Query Frame = 0 

Query: 242 LFFLAGTSYDRILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---I 301
           LFFLAGTSYDRI L+YLDEMG              ++  ASLALPGMS FVAE IV   I
Sbjct: 345 LFFLAGTSYDRIRLIYLDEMGGIAIPMPKIFTMFSILSMASLALPGMSGFVAELIVFFGI 404

Query: 302 ITSQKSLVMRKTLITLV 303
           ITSQK L+M K LIT V
Sbjct: 405 ITSQKFLLMPKILITFV 421

[Close]
BLAST of CmoCh12G007680 vs. ExPASy Swiss-Prot
Match: B1A984 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Carica papaya OX=3649 GN=ndhD PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-11
Identity = 47/77 (61.04%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 242 LFFLAGTSYDRILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---I 301
           LFFLAGTSYDRI LVYLDEMG              ++  ASLALPGMS FVAE IV   I
Sbjct: 345 LFFLAGTSYDRIRLVYLDEMGGMAISMPKIFTMFSILSMASLALPGMSGFVAELIVFFGI 404

Query: 302 ITSQKSLVMRKTLITLV 303
           ITSQK  +M K LIT V
Sbjct: 405 ITSQKYFLMAKILITFV 421

[Close]
BLAST of CmoCh12G007680 vs. ExPASy Swiss-Prot
Match: Q68RV6 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Panax ginseng OX=4054 GN=ndhD PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-11
Identity = 48/77 (62.34%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 242 LFFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---I 301
           LFFLAGTSYDRI LVYLDEMG +                ASLALPGMS FVAE IV   I
Sbjct: 345 LFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFTSFSMASLALPGMSGFVAELIVFFGI 404

Query: 302 ITSQKSLVMRKTLITLV 303
           ITSQK L+M K LIT V
Sbjct: 405 ITSQKYLLMPKILITFV 421

[Close]
BLAST of CmoCh12G007680 vs. ExPASy Swiss-Prot
Match: Q09WW8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Morus indica OX=248361 GN=ndhD PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.4e-11
Identity = 46/77 (59.74%), Postives = 51/77 (66.23%), Query Frame = 0 

Query: 242 LFFLAGTSYDRILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---I 301
           LFFLAGTSYDRI LVYLDEMG              ++  ASLALPGMS FVAE I+   I
Sbjct: 345 LFFLAGTSYDRIRLVYLDEMGGMAITIPKIFTTFSILSMASLALPGMSGFVAELILFFGI 404

Query: 302 ITSQKSLVMRKTLITLV 303
           +TSQK L+M K LIT V
Sbjct: 405 LTSQKYLLMTKILITFV 421

[Close]
BLAST of CmoCh12G007680 vs. ExPASy TrEMBL
Match: A0A498KQZ6 (Proton_antipo_M domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_037507 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 8.2e-39
Identity = 103/167 (61.68%), Postives = 117/167 (70.06%), Query Frame = 0 

Query: 154 RGTLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFN-SGQG 213
           RGTL+YLYA SRNLI+NGS+WIGSDQYG + PRPF   +LVD+SRHNSNNLCSFN S   
Sbjct: 8   RGTLQYLYAFSRNLIKNGSVWIGSDQYGIITPRPFYILSLVDYSRHNSNNLCSFNISRSA 67

Query: 214 NFKTKNSLFLRTEWSYLTNNLSWISWRCPFLFFLAGTSYDRILLVYLDEMG--------- 273
           N+  K     RT+ S+ TNNLS I WRC   FFLAGTSYDRI LVYLDEMG         
Sbjct: 68  NWFYKR---YRTQRSHFTNNLSRIYWRC--AFFLAGTSYDRIRLVYLDEMGGMAIAIPKI 127

Query: 274 ----YLIDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV 303
                ++  ASLALPGMS FVAE +V   I+TSQK L+M K LIT V
Sbjct: 128 FTTFSILSMASLALPGMSGFVAELLVFFGILTSQKYLLMTKILITFV 169

[Close]
BLAST of CmoCh12G007680 vs. ExPASy TrEMBL
Match: A0A650F2C7 (NADH-plastoquinone oxidoreductase subunit 4 OS=Senegalia senegal OX=138043 GN=ndhD PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 8.7e-33
Identity = 105/245 (42.86%), Postives = 125/245 (51.02%), Query Frame = 0 

Query: 127 CGTGNNIQ---------SISDFLLLLLLNHRLYPVPRGTLEYLYASSRNLIQNGSIWIGS 186
           CGTGNNI           I+D+ L  ++        RGTL+YLYA SRNLI+NGS+WIGS
Sbjct: 207 CGTGNNILYWISYCFCCQIADYTLTYMVTRH---PRRGTLQYLYAFSRNLIKNGSVWIGS 266

Query: 187 DQYG-LPPRPFSFFTLVDHSRHNSNNLCSFN-SGQGNFKTKNSLFLR------------- 246
           + YG + PR FS F+LV+  R NSNNLCSFN S    FK KNSLFLR             
Sbjct: 267 NYYGIITPRSFSIFSLVNSIRRNSNNLCSFNISWSTYFKKKNSLFLRISYGFHNYRNLFY 326

Query: 247 ----TEWSYLTNNLSWISWRCPFLFFLAGTSYDRILL------------VYLDEMGYLID 306
               T+ S+ TNN SWI W C F        Y+  LL              +    YLID
Sbjct: 327 KRYGTQRSHFTNNFSWIYWCCAFFLGRNELCYNTSLLSRRNGRNGYSNAKNIHGFQYLID 386

Query: 307 GASLALPGMSSF---VAEFIVIITSQKSLVMRKTLITLVHGNWNHINSHLFIIYLTPDVL 329
           G S  + G   F   +  F       K     K      +GNWN INS+LFIIY+TPDVL
Sbjct: 387 GFS-CIAGHERFCCRIDSFFWNNYQSKISFNDKNTNHFCNGNWNDINSYLFIIYVTPDVL 446

[Close]
BLAST of CmoCh12G007680 vs. ExPASy TrEMBL
Match: A0A4Y6I5A8 (NADH-plastoquinone oxidoreductase subunit 4 OS=Teucrium mascatense OX=2172029 GN=ndhD PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.6e-26
Identity = 89/207 (43.00%), Postives = 107/207 (51.69%), Query Frame = 0 

Query: 154 RGTLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFN-SGQG 213
           RGTL+YLYASSRNLI+NGSIWI SD+YG + PR FS F+LV++SR N+NNLCSFN S   
Sbjct: 240 RGTLKYLYASSRNLIKNGSIWISSDKYGIISPRSFSIFSLVNNSRRNANNLCSFNISRST 299

Query: 214 NFKTKNSLFL--------RTEWSY---------LTNNLSWISWRCPFLFFLAGTSYDRIL 273
            FK KNSLFL           W Y          TNNLSWI W C F         +   
Sbjct: 300 KFKKKNSLFLCISYGFHNYRNWFYHGYGAQRSPFTNNLSWIYWCCAFFLGRNNLRKNTSC 359

Query: 274 L------------VYLDEMGYLIDGASLALPGMSSFVAEFIVIITSQ---KSLVMRKTLI 327
           L              + ++  L DG    +     F      +  +    K     KT  
Sbjct: 360 LSRRNGWNSYPNAKNIHDVQQLFDGLP-CITRHEWFCCRINSLFWTNYKFKICFNDKTPN 419

[Close]
BLAST of CmoCh12G007680 vs. ExPASy TrEMBL
Match: A0A410PAA8 (NADH-plastoquinone oxidoreductase subunit 4 OS=Commiphora gileadensis OX=1700993 GN=ndhD PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.6e-16
Identity = 59/101 (58.42%), Postives = 65/101 (64.36%), Query Frame = 0 

Query: 243 FFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---II 302
           FFLAGTSYDRI L YLDEMG L             +  ASLALPGMS FVAE IV   II
Sbjct: 177 FFLAGTSYDRIRLGYLDEMGGLAIPIPKIFTIFSILSMASLALPGMSGFVAELIVFFGII 236

Query: 303 TSQKSLVMRKTLITLVHGNWNHINSHLFIIYLTPDVLWIQA 328
           TSQK     K      +GNWN INS+LFIIY+T +VLW+QA
Sbjct: 237 TSQKYFFNVKNTNYFCNGNWNDINSYLFIIYVTANVLWVQA 277

[Close]
BLAST of CmoCh12G007680 vs. ExPASy TrEMBL
Match: A0A6H1XID1 (NADH-plastoquinone oxidoreductase subunit 4 OS=Lycoris aurea OX=152838 GN=ndhD PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.1e-14
Identity = 62/126 (49.21%), Postives = 69/126 (54.76%), Query Frame = 0 

Query: 242 LFFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---I 301
           LFFL GTS DRI LVYLDEMG +                AS+ALPGMS FVAE +V   I
Sbjct: 346 LFFLVGTSCDRIRLVYLDEMGGVSIPMPKIFSMFSSFSMASVALPGMSGFVAESVVFFGI 405

Query: 302 ITSQKSLVMRKTLIT-------------------------LVHGNWNHINSHLFIIYLTP 327
           ITS K L+M K LIT                         L +GNWN INS+LFIIY+T 
Sbjct: 406 ITSPKYLLMPKMLITNCGISSIFGNNYQPKISFNAQNANYLCNGNWNDINSYLFIIYVTS 465

[Close]
BLAST of CmoCh12G007680 vs. TAIR 10
Match: ATCG01050.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-11
Identity = 44/77 (57.14%), Postives = 49/77 (63.64%), Query Frame = 0 

Query: 242 LFFLAGTSYDRILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---I 301
           LFFLAGTSYDRI LVYLDEMG              ++  ASLALPGMS F+AEFIV   I
Sbjct: 351 LFFLAGTSYDRIRLVYLDEMGGMAISIPKIFTMFTILSMASLALPGMSGFIAEFIVFFGI 410

Query: 302 ITSQKSLVMRKTLITLV 303
           ITSQK  ++ K  I  V
Sbjct: 411 ITSQKYFLISKIFIIFV 427

[Close]
BLAST of CmoCh12G007680 vs. TAIR 10
Match: ATCG01060.1 (iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding )

HSP 1 Score: 52.8 bits (125), Expect = 6.2e-07
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 0 

Query: 75  GCTQCLRACPT--LQMRPWGRCKAKQIASALQEEKTVLVSKC 115
           GCTQC+RACPT  L+M PW  CKAKQIASA + E  V   +C
Sbjct: 13  GCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRC 54

The following BLAST results are available for this feature:
BLAST of CmoCh12G007680 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZL83.7e-1263.64NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus OX=3659... [more]
Q0ZIW81.1e-1161.04NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera OX=29760... [more]
B1A9841.8e-1161.04NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Carica papaya OX=3649 G... [more]
Q68RV61.8e-1162.34NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Panax ginseng OX=4054 G... [more]
Q09WW82.4e-1159.74NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Morus indica OX=248361 ... [more]
BLAST of CmoCh12G007680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A498KQZ68.2e-3961.68Proton_antipo_M domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_03... [more]
A0A650F2C78.7e-3342.86NADH-plastoquinone oxidoreductase subunit 4 OS=Senegalia senegal OX=138043 GN=nd... [more]
A0A4Y6I5A84.6e-2643.00NADH-plastoquinone oxidoreductase subunit 4 OS=Teucrium mascatense OX=2172029 GN... [more]
A0A410PAA82.6e-1658.42NADH-plastoquinone oxidoreductase subunit 4 OS=Commiphora gileadensis OX=1700993... [more]
A0A6H1XID13.1e-1449.21NADH-plastoquinone oxidoreductase subunit 4 OS=Lycoris aurea OX=152838 GN=ndhD P... [more]
BLAST of CmoCh12G007680 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG01050.11.4e-1157.14NADH-Ubiquinone/plastoquinone (complex I) protein [more]
ATCG01060.16.2e-0761.90iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.20coord: 67..129
e-value: 1.4E-5
score: 26.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G007680.1CmoCh12G007680.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
cellular_component GO:0034357 photosynthetic membrane
cellular_component GO:0009536 plastid
molecular_function GO:0005488 binding
molecular_function GO:0016491 oxidoreductase activity