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CmoCh12G007580 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGATTGGTTACGGAGGGACCGGTTCGGTCTTGTAGGTTGGTCCGGGCTATTCCTCTTTCCTTGTGCCTATTGTGTCGTAGGAGGTTGGTTTACAGTACAGGTACAACCTTTGTAACTTACTTAATGGTATACCCAGGGATTGCCAAGTTCCTATTTGGAAGGATGCAACTTCTTAACCGCCACTGTTAACACTCCTGCTAATAGTTTAGCACACTCTTTCGTCTTACTATGGGGTCCTGAAGCACAAGGAGATAGATTTGACTCCTTGGTGTCCATTAGGTGGTCTATGGACTTTGCTTTCTTCGGACTAATAGGTCTTGAATCTTACACGGCAATTTCAATTTGGACTTGCTTGATCTCTTCAATTGAGACCTTATAATGATCATGCAATCGCCGGGACCAATTGCTGTTTTTCTTTCTGTATTCCTGATTTATCTCCACTAGGGCAGTCTAGTCTTCTGGTTGGTTCTTTGCCCCTAGTTTTTGTGTAGCTGCTATATTTCTATTCATCTTTTACAAGGATTTCATAATTGGACATTGAACCCCTTTCATATGATGTTGCAGGTGTATTGGGCGTGGCTATGTGTCATGGTGCTACTGTATAAAATCCCTTATTTGAAGATGGTGATGGATGGTGAAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGAGGTTTTCTAATAAAAAAAGGGGTTATTACATTTCTTTCTCTTATTTGTAACAGTAACTGCTTTATGGATGAGTGCTTGCTCTTGGAGTAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTTGATGGCGGCTCAAGCAAGATTAGCCTCATGAAAACACACCTTACTTATATTACCTGA ATGGATGATTGGTTACGGAGGGACCGGTTCGGTCTTGTAGGTTGGTCCGGGCTATTCCTCTTTCCTTGTGCCTATTGTGTCGTAGGAGGTTGGTTTACAGTACAGGTGTATTGGGCGTGGCTATGTGTCATGGTGCTACTGTATAAAATCCCTTATTTGAAGATGGTGATGGATGGTGAAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGAGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTTGATGGCGGCTCAAGCAAGATTAGCCTCATGAAAACACACCTTACTTATATTACCTGA ATGGATGATTGGTTACGGAGGGACCGGTTCGGTCTTGTAGGTTGGTCCGGGCTATTCCTCTTTCCTTGTGCCTATTGTGTCGTAGGAGGTTGGTTTACAGTACAGGTGTATTGGGCGTGGCTATGTGTCATGGTGCTACTGTATAAAATCCCTTATTTGAAGATGGTGATGGATGGTGAAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGAGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTTGATGGCGGCTCAAGCAAGATTAGCCTCATGAAAACACACCTTACTTATATTACCTGA MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYWAWLCVMVLLYKIPYLKMVMDGENRFLPGNPTQAEETYSMVTANRFWYQIFEEIRGKILNLRLSIYIHPKSSLNRRDSYFDGGSSKISLMKTHLTYIT Homology
BLAST of CmoCh12G007580 vs. ExPASy Swiss-Prot
Match: P69685 (Photosystem II D2 protein OS=Antirrhinum majus OX=4151 GN=psbD PE=1 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10 Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 0
HSP 2 Score: 55.5 bits (132), Expect = 5.6e-07 Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0
BLAST of CmoCh12G007580 vs. ExPASy Swiss-Prot
Match: Q8S8X8 (Photosystem II D2 protein OS=Atropa belladonna OX=33113 GN=psbD PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10 Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 0
HSP 2 Score: 55.5 bits (132), Expect = 5.6e-07 Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0
BLAST of CmoCh12G007580 vs. ExPASy Swiss-Prot
Match: B5LMM1 (Photosystem II D2 protein OS=Cicer arietinum OX=3827 GN=psbD PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10 Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 0
HSP 2 Score: 55.5 bits (132), Expect = 5.6e-07 Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0
BLAST of CmoCh12G007580 vs. ExPASy Swiss-Prot
Match: Q4VZN8 (Photosystem II D2 protein OS=Cucumis sativus OX=3659 GN=psbD PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10 Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 0
HSP 2 Score: 55.5 bits (132), Expect = 5.6e-07 Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0
BLAST of CmoCh12G007580 vs. ExPASy Swiss-Prot
Match: Q0G9W7 (Photosystem II D2 protein OS=Daucus carota OX=4039 GN=psbD PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10 Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 0
HSP 2 Score: 55.5 bits (132), Expect = 5.6e-07 Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0
BLAST of CmoCh12G007580 vs. ExPASy TrEMBL
Match: A0A078EKT7 (BnaC05g32120D protein OS=Brassica napus OX=3708 GN=BnaC05g32120D PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16 Identity = 58/128 (45.31%), Postives = 65/128 (50.78%), Query Frame = 0
BLAST of CmoCh12G007580 vs. ExPASy TrEMBL
Match: A0A3P6H6D7 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC45T60872H PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16 Identity = 58/128 (45.31%), Postives = 65/128 (50.78%), Query Frame = 0
BLAST of CmoCh12G007580 vs. ExPASy TrEMBL
Match: A0A3P6H9V0 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC29T60453H PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16 Identity = 58/128 (45.31%), Postives = 65/128 (50.78%), Query Frame = 0
BLAST of CmoCh12G007580 vs. ExPASy TrEMBL
Match: A0A078HPI2 (BnaC03g60960D protein OS=Brassica napus OX=3708 GN=BnaC03g60960D PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16 Identity = 58/128 (45.31%), Postives = 65/128 (50.78%), Query Frame = 0
BLAST of CmoCh12G007580 vs. ExPASy TrEMBL
Match: A0A3S3PBZ6 (Putative Photosystem II D2 protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02738200 PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16 Identity = 58/128 (45.31%), Postives = 65/128 (50.78%), Query Frame = 0
BLAST of CmoCh12G007580 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D ) HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11 Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0
HSP 2 Score: 55.5 bits (132), Expect = 4.0e-08 Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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