CmoCh12G007550 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G007550
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Cytochrome b
Location	Cmo_Chr12: 5935470 .. 5938318 (-)
RNA-Seq Expression	CmoCh12G007550
Synteny	CmoCh12G007550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATACATAGCAATTCACTGCAAGAATCACATACATAAACATAGCATGCATAGCATTTCACTGCAAGAAACATCCAACCTAGCATACTGCAATAACATATGGTGCATGCAAGAGCCACAGGGCATGCACCAACATACATACATAACTAACGCCAACAGTAAGGTTACTTACCTCTTGGCCTTGGCCGAAGTCACCCACAACACTAACTCTAGCGCCCAACTACCTCCTATAAGATAACATGATATACTTAGAGCGCTTTCACAACTATCCCTCATGCCTAGCTACCAAGATATGTCCCTATCGCAAGCTATTTGTCAAAATGGGGTTATACTGACCTCAGATGGTTGAAACAAGGGTGGGAATGGCTCTAGAATGGTCGAAAACCTAGGAATCGGTATACTATTCGGATGTCGAGCCGCCAAGCCGCCCCACCAAGCCACACTTAGCCGAGCTGGAGGTTCGCAAAGTCGCCGATGGAGCCGAAATCGATGGCTGCGACGAACACCGCCGGCGCAGGGTTTCTGGCGCACCTCCAATTTGGGCCAAAAAGGGAACGAGGCCCCGGGGTGGTGTCCGAACGCGGCCTGCAAAGGGTGGGCTGCACGCTGGCCGAGACGTCTCGCGGAATGCCGAGGGTCGACCCACGCCTGCCACTGCATCTTCCTTGTCTGAAGGTCCCTATAGTCCTAATCGCAGAGGATATAGATATGAAAAAGGTAACCGCCTGTTCGGTTTTGTATTAGTTTTGAAGCAGAATGTGAATTATGATGAGTTGTAGTTGATTAGGAGAACTGCTATCTCACTACGGGGATTACTCTTACTCATCTTTCATTATTCATCTTTTACGTCCTGGGACCGAGATATTCATTATGAATCGCCAAAGTCTTCCTACTTCTCCATTGTTCCAATCAGATCCCCAAAATGAGAAAGAAGGACCAAAATTGAATCATGACTATCCTTATAAGCTATTCTGATATTCAGATTCGATATAGATCAAATCGTGTAAGCCGACCTTTTCCTTCCTTGGCCCATGTAAGAATTCGTCGTCTGATTTCATCTTCTTCTTCCTCGATGCTCCATAGGAATACATCGCTATTCCTTTTCTTACACCGAGAAAGGGTCATTCCGAATCACAAGAGTTTCATTCATTTTGATTTGAGGATGAGGCATTAGCAGACTGACTCGCCTTACCACCTTTCCCTCTTCGAGTAACCCTATTCAGTCAGAAAAAGAGGAAGTGGGGTTGAGACGAGAGCTACGGAACCTTAATTACCAGATTGAACAGGGGAAACTAGCCGATTCTTCTTTCATGAGGTAAATGGATGGGTTGGTTAAAGCATCTTCCGGCCTTCCTGTCCTTTACAGTCGAGTCGAGCTACTTACTCATTCAGTCTTCTCTCTCTACACCCTTTGAAGTCAGAAAAAGAGAAAGGTCAGTGGTTGAGACTTTCGCTCGTCAACCTTTGACTGATTGAACAAGGTAAAGTCTCAGTGATTGACTTCCCTTCCGGTTGGTTCAGTAGCTCAGGGAGAGGGTTGAGGTTTCCTCTTTTACCTTGTTCCATCTGGTTCAGGATTTGATTCTCGACCGTAAGTAAAGGACAAGAAGGAAGATGAATGAACGAACCCATTTACCGAGTCTTTCAGAAGTTCAAGAATAGAAATAGGTGAAAAGGGGAATTAAGAGGAAAGGGGCGAAGCAAGCAGCTCGACGAGAAGAGTGAAAGAAGGTGTGAAGTCAGTCTCTTTTCATTTACTCGACTGTAAAAGGGAATATCGTATCAAGGGAGCTTCTCTGTCTTTCCTTCCCCGGAGTAAGTAGCTCGACAGTAAAGGGGCTAATTCATTGATTCTTCTATCACTAGGGACTATTCTTTCACAAGGGAAATAGGGTCAGGGAATATAGGGGCCGGAAGTAGCGAAGGTAAGGGGGAGGGTGAAGTAGCGTCTTCATTTACTCGACTGGGTAAGGTCAGGAGCGAAGACTCAGACTGAGTGTTTGAAGGTGAATGAGGTTACAGTGAAAGAAGGGACCAAGGAGCGAAGCGGTGAGCCCGAGTTTACGAGGCGAACGAGTGAAAGAGCTCGACAGTAAGTAAAGGTTCCGGAGTTCAGGAGTCAGAGGAGCGAAGGGAAGTCTCATTCATCTTGTTCTTGTCTTGCTTTCTCAAGGATAGGTTGGTTGAGTCTAACGAATAAGGAGTTGGGTGTTTCCTGTTCCTGTTCCGGAAGGTATTGAATGAATTTACTCGACTGGAAAGTTCAAGGGCATATGGGTTCCGGTTCCGGGGCAGGCTCATGAGCTTGACCTTCAAGAATAGGTTACGGTTCAGTAGTTCAGGTCATATCGGTTCATGAAATTCAATTGTTCAACCTTGTTTACGAGGTGAGGGAAATGNGAATCGCCAAAGTCTTCCTACTTCTCCATTGTTCCAATCAGATCCCCAAAATGAGAAAGAAGGACCAAAATTGAATCATGACTATGCTTATAAGCTATTCTGATATTCAGATTCGATATAGATCAAATCATGTAAGCCGACCTTTTCCTTCCTTGGCCCATGTAAGAACTCGTCGTCTGATTTCATCTTCTTCTTCCTGGATGTTCCATAGGAATCCATCGCTATTCCTTTTCTTACACCAAGAAAGGATCATTCCGAATCACAAGAGTTTCATTCATTTTGATTTGAGGATGAGGCATTAGCAGACTGACTCTCCTTACCACCTTTCCCTCTTCGAGTAACCCTATTCAGTCAGAAAAAGAGGAAGTGGGGTTGACACGAGAGCTACGGAACCTTAATTACCAGATTGAACAGGGTAAACTAGCCGATTCTTCTTTCATGAGGTAA

mRNA sequence

ATGACATACATAGCAATTCACTGCAAGAATCACATACATAAACATAGCATGCATAGCATTTCACTGCAAGAAACATCCAACCTAGCATACTGCAATAACATATGGTGCATGCAAGAGCCACAGGGCATGCACCAACATACATACATAACTAACGCCAACAGTAAGGAATCGGTATACTATTCGGATGTCGAGCCGCCAAGCCGCCCCACCAAGCCACACTTAGCCGAGCTGGAGGTTCGCAAAGTCGCCGATGGAGCCGAAATCGATGGCTGCGACGAACACCGCCGGCGCAGGGTTTCTGGCGCACCTCCAATTTGGGCCAAAAAGGGAACGAGGCCCCGGGGTGGTGTCCGAACGCGGCCTGCAAAGGGTGGGCTGCACGCTGGCCGAGACGTCTCGCGGAATGCCGAGGGTCGACCCACGCCTGCCACTGCATCTTCCTTGTCTGAAGGTCCCTATAGTCCTAATCGCAGAGGATATAGATATGAAAAAGGTAACCGCCTGTTCGGTTTTGTATTAGTTTTGAAGCAGAATATTCGATATAGATCAAATCGTGTAAGCCGACCTTTTCCTTCCTTGGCCCATTCAGAAAAAGAGGAAGTGGGGTTGAGACGAGAGCTACGGAACCTTAATTACCAGATTGAACAGGGGAAACTAGCCGATTCTTCTTTCATGAGGGACTATTCTTTCACAAGGGAAATAGGGTCAGGGAATATAGGGGCCGGAAGTAGCGAAGGAGCGAAGACTCAGACTGAGTGTTTGAAGGTGAATGAGGTTACAGTGAAAGAAGGGACCAAGGAGCGAAGCGGTGAGCCCGAGTTTACGAGGCGAACGAGTGAAAGAGCTCGACAATTCGATATAGATCAAATCATACTGACTCTCCTTACCACCTTTCCCTCTTCGAGTAACCCTATTCAGTCAGAAAAAGAGGAAGTGGGGTTGACACGAGAGCTACGGAACCTTAATTACCAGATTGAACAGGGTAAACTAGCCGATTCTTCTTTCATGAGGTAA

Coding sequence (CDS)

ATGACATACATAGCAATTCACTGCAAGAATCACATACATAAACATAGCATGCATAGCATTTCACTGCAAGAAACATCCAACCTAGCATACTGCAATAACATATGGTGCATGCAAGAGCCACAGGGCATGCACCAACATACATACATAACTAACGCCAACAGTAAGGAATCGGTATACTATTCGGATGTCGAGCCGCCAAGCCGCCCCACCAAGCCACACTTAGCCGAGCTGGAGGTTCGCAAAGTCGCCGATGGAGCCGAAATCGATGGCTGCGACGAACACCGCCGGCGCAGGGTTTCTGGCGCACCTCCAATTTGGGCCAAAAAGGGAACGAGGCCCCGGGGTGGTGTCCGAACGCGGCCTGCAAAGGGTGGGCTGCACGCTGGCCGAGACGTCTCGCGGAATGCCGAGGGTCGACCCACGCCTGCCACTGCATCTTCCTTGTCTGAAGGTCCCTATAGTCCTAATCGCAGAGGATATAGATATGAAAAAGGTAACCGCCTGTTCGGTTTTGTATTAGTTTTGAAGCAGAATATTCGATATAGATCAAATCGTGTAAGCCGACCTTTTCCTTCCTTGGCCCATTCAGAAAAAGAGGAAGTGGGGTTGAGACGAGAGCTACGGAACCTTAATTACCAGATTGAACAGGGGAAACTAGCCGATTCTTCTTTCATGAGGGACTATTCTTTCACAAGGGAAATAGGGTCAGGGAATATAGGGGCCGGAAGTAGCGAAGGAGCGAAGACTCAGACTGAGTGTTTGAAGGTGAATGAGGTTACAGTGAAAGAAGGGACCAAGGAGCGAAGCGGTGAGCCCGAGTTTACGAGGCGAACGAGTGAAAGAGCTCGACAATTCGATATAGATCAAATCATACTGACTCTCCTTACCACCTTTCCCTCTTCGAGTAACCCTATTCAGTCAGAAAAAGAGGAAGTGGGGTTGACACGAGAGCTACGGAACCTTAATTACCAGATTGAACAGGGTAAACTAGCCGATTCTTCTTTCATGAGGTAA

Protein sequence

MTYIAIHCKNHIHKHSMHSISLQETSNLAYCNNIWCMQEPQGMHQHTYITNANSKESVYYSDVEPPSRPTKPHLAELEVRKVADGAEIDGCDEHRRRRVSGAPPIWAKKGTRPRGGVRTRPAKGGLHAGRDVSRNAEGRPTPATASSLSEGPYSPNRRGYRYEKGNRLFGFVLVLKQNIRYRSNRVSRPFPSLAHSEKEEVGLRRELRNLNYQIEQGKLADSSFMRDYSFTREIGSGNIGAGSSEGAKTQTECLKVNEVTVKEGTKERSGEPEFTRRTSERARQFDIDQIILTLLTTFPSSSNPIQSEKEEVGLTRELRNLNYQIEQGKLADSSFMR

Homology

[Close]

BLAST of CmoCh12G007550 vs. ExPASy TrEMBL
Match: A0A6J1FGM4 (Cytochrome b OS=Cucurbita moschata OX=3662 GN=LOC111443842 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 7.6e-56
Identity = 113/119 (94.96%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 53  NSKESVYYSDVEPPSRPTKPHLAELEVRKVADGAEIDGCDEHRRRRVSGAPPIWAKKGTR 112
           +S ESVYYSDVEPPSRPTKPHLAELEVRKVADGAEIDGCDEHRRRRVSGAPPIWAKKGTR
Sbjct: 46  DSSESVYYSDVEPPSRPTKPHLAELEVRKVADGAEIDGCDEHRRRRVSGAPPIWAKKGTR 105

Query: 113 PRGGVRTRPAKGGLHAGRDVSRNAEGRPTPATASSLSEGPYSPNRRGYRYEKG--NRLF 170
           PRGGVRTRPAKGGLHAGRDVSRNAEGRPTPATASSLSEGPYSPNRRGYRYEK   NR F
Sbjct: 106 PRGGVRTRPAKGGLHAGRDVSRNAEGRPTPATASSLSEGPYSPNRRGYRYEKATLNRFF 164

The following BLAST results are available for this feature:

BLAST of CmoCh12G007550 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh12G007550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGM4	7.6e-56	94.96	Cytochrome b OS=Cucurbita moschata OX=3662 GN=LOC111443842 PE=4 SV=1	[more]

BLAST of CmoCh12G007550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G007550.1	CmoCh12G007550.1	mRNA