CmoCh12G007500 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G007500
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	Cmo_Chr12: 5862182 .. 5862521 (-)
RNA-Seq Expression	CmoCh12G007500
Synteny	CmoCh12G007500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACATAATGGAGAAGCAGTACCACCAGTTCCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGATGGTAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAACCTAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAGTGGGAAAGAAAGATAG

mRNA sequence

ATGTCACATAATGGAGAAGCAGTACCACCAGTTCCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAGTGGGAAAGAAAGATAG

Coding sequence (CDS)

ATGTCACATAATGGAGAAGCAGTACCACCAGTTCCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAGTGGGAAAGAAAGATAG

Protein sequence

MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEEGWKEYMKIEMGELNSKSRPFVERQILRHTCSGKER

Homology

[Close]

BLAST of CmoCh12G007500 vs. ExPASy TrEMBL
Match: A0A6J1EVI6 (LOW QUALITY PROTEIN: uncharacterized protein LOC111438459 OS=Cucurbita moschata OX=3662 GN=LOC111438459 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.0e-14
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERT------LQEDEEG 54
          MSHNGEAVPPVPDLNTTILQAIQGMM+MMMEDRQERRAQQQRQERT      + ED +G
Sbjct: 1  MSHNGEAVPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTPRRMERVHEDRDG 59

[Close]

BLAST of CmoCh12G007500 vs. ExPASy TrEMBL
Match: A0A5A7UMH2 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00050 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE 52
          MSH+GE V  V DLN  ILQAIQGM+++M E+RQERRAQQQR+ R LQEDE
Sbjct: 1  MSHDGEEVSKVIDLNVAILQAIQGMLELMREERQERRAQQQREVRPLQEDE 51

[Close]

BLAST of CmoCh12G007500 vs. ExPASy TrEMBL
Match: A0A6J1DX75 (uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025303 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-07
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 6  EAVPPVP-DLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE 52
          + VP VP D NT ILQAIQGMM+MMMEDRQERRAQQQR+ER LQED+
Sbjct: 4  DGVPQVPQDPNTVILQAIQGMMEMMMEDRQERRAQQQREERALQEDD 50

[Close]

BLAST of CmoCh12G007500 vs. ExPASy TrEMBL
Match: A0A5A7VII0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00510 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.7e-07
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE 52
          MSH+GE VP V D N  ILQAIQGM+++M E+RQERRAQQQR+ R  QEDE
Sbjct: 1  MSHDGEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDE 51

[Close]

BLAST of CmoCh12G007500 vs. ExPASy TrEMBL
Match: A0A5D3DDM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00010 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.7e-07
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE 52
          MSH+GE VP V D N  ILQAIQGM+++M E+RQERRAQQQR+ R  QEDE
Sbjct: 1  MSHDGEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRLFQEDE 51

The following BLAST results are available for this feature:

BLAST of CmoCh12G007500 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh12G007500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EVI6	7.0e-14	81.36	LOW QUALITY PROTEIN: uncharacterized protein LOC111438459 OS=Cucurbita moschata ...	[more]
A0A5A7UMH2	1.7e-07	70.59	Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153...	[more]
A0A6J1DX75	2.9e-07	78.72	uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5A7VII0	3.7e-07	68.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DDM5	3.7e-07	68.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmoCh12G007500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G007500.1	CmoCh12G007500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding