CmoCh12G007490 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G007490
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein S19
LocationCmo_Chr12: 5856410 .. 5856953 (-)
RNA-Seq ExpressionCmoCh12G007490
SyntenyCmoCh12G007490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACGACGATCTATATGGAAGGGCAGTTTTGTTGATGCATTCCTGTTGAGAATGAAGAAGAAGAGAGATCCTCTTTTGAACAGGAAAATTTGGTCACGTAGATCTTCGATTTTGCCGAAATTCGTTGATAGCTCCGTACGAATTTACAATGGAAAAACTTCTGTTCGTTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCATCGACACGGAAACGAAGACTTTCGAGAACAAATATTGGACAGGGAAAAAAAAGGGGAGAAAGTCAAGGTGCATATATGGCACGAAAAGGAAATCTGATTGAGCATTTCATATTCACTTTGATTTGAGAATCCAGTTTCTAGTAAAATCAGATATCTTATTCTATCAGAATCAGACGAGCCGCCTGACGCATTTACATTTCACCATTCAGAGCGCAATACATACATTCCTAAGAAGACGAAGAGGGGATCTCTCTCGATCTCAATTGAGACTCGCACCCACCCATTGGGGCAGGCTCGGGGGAACCTGTACCCCCATCTCCTTTGA

mRNA sequence

ATGCCACGACGATCTATATGGAAGGGCAGTTTTGTTGATGCATTCCTGTTGAGAATGAAGAAGAAGAGAGATCCTCTTTTGAACAGGAAAATTTGGTCACGTAGATCTTCGATTTTGCCGAAATTCGTTGATAGCTCCGTACGAATTTACAATGGAAAAACTTCTGTTCGTTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCATCGACACGGAAACGAAGACTTTCGAGAACAAATATTGGACAGGGAAAAAAAAGGGGAGAAAGTCAAGAATCAGACGAGCCGCCTGACGCATTTACATTTCACCATTCAGAGCGCAATACATACATTCCTAAGAAGACGAAGAGGGGATCTCTCTCGATCTCAATTGAGACTCGCACCCACCCATTGGGGCAGGCTCGGGGGAACCTGTACCCCCATCTCCTTTGA

Coding sequence (CDS)

ATGCCACGACGATCTATATGGAAGGGCAGTTTTGTTGATGCATTCCTGTTGAGAATGAAGAAGAAGAGAGATCCTCTTTTGAACAGGAAAATTTGGTCACGTAGATCTTCGATTTTGCCGAAATTCGTTGATAGCTCCGTACGAATTTACAATGGAAAAACTTCTGTTCGTTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCATCGACACGGAAACGAAGACTTTCGAGAACAAATATTGGACAGGGAAAAAAAAGGGGAGAAAGTCAAGAATCAGACGAGCCGCCTGACGCATTTACATTTCACCATTCAGAGCGCAATACATACATTCCTAAGAAGACGAAGAGGGGATCTCTCTCGATCTCAATTGAGACTCGCACCCACCCATTGGGGCAGGCTCGGGGGAACCTGTACCCCCATCTCCTTTGA

Protein sequence

MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQESDEPPDAFTFHHSERNTYIPKKTKRGSLSISIETRTHPLGQARGNLYPHLL
Homology
[Close]
BLAST of CmoCh12G007490 vs. ExPASy Swiss-Prot
Match: P27527 (Ribosomal protein S19, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS19 PE=2 SV=2)

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-39
Identity = 81/93 (87.10%), Postives = 85/93 (91.40%), Query Frame = 0 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRD L NRKIWSRRSSILP+FVD  VRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDLLFNRKIWSRRSSILPEFVDCFVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGE 94
          TEG+VGHKFGEFA TRKRR SRTNIG G+KRG+
Sbjct: 61 TEGKVGHKFGEFAFTRKRRPSRTNIGPGRKRGK 93

[Close]
BLAST of CmoCh12G007490 vs. ExPASy Swiss-Prot
Match: P39697 (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS19 PE=1 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-25
Identity = 57/77 (74.03%), Postives = 66/77 (85.71%), Query Frame = 0 

Query: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
           M  RS+WK  FVDAFL+   KK++  LNRKIWSRRS+ILP++VDS+VRIYNGKT VRCKI
Sbjct: 131 MMSRSVWKDPFVDAFLM---KKKNAALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 61  TEGRVGHKFGEFASTRK 78
           TEG+VGHKFGEFA TRK
Sbjct: 191 TEGKVGHKFGEFAFTRK 204

[Close]
BLAST of CmoCh12G007490 vs. ExPASy Swiss-Prot
Match: P26874 (Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS19 PE=3 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-16
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 0 

Query: 4  RSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEG 63
          RSIWKG FVD  L + KK     +  +IWSRRS ILP+FV    +IYNGK  V  KITE 
Sbjct: 3  RSIWKGPFVDTCLFKQKK-----IRWRIWSRRSCILPQFVGCYAQIYNGKGFVGLKITEE 62

Query: 64 RVGHKFGEFASTRK 78
           VGHKFGEFASTRK
Sbjct: 63 MVGHKFGEFASTRK 71

[Close]
BLAST of CmoCh12G007490 vs. ExPASy Swiss-Prot
Match: Q2RQW4 (30S ribosomal protein S19 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=rpsS PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 0 

Query: 4  RSIWKGSFVDAFLL-RMKKKRDPLLNR--KIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 63
          RS+WKG F+D +LL + +K R    N   KIWSRRS+I+P+FV  +  +YNG+  V   +
Sbjct: 3  RSVWKGPFIDGYLLNKAEKARSSGRNEVIKIWSRRSTIMPQFVGLTFGVYNGQKFVPVLV 62

Query: 64 TEGRVGHKFGEFASTR 77
          TE  VGHKFGEFA TR
Sbjct: 63 TEQMVGHKFGEFAPTR 78

[Close]
BLAST of CmoCh12G007490 vs. ExPASy Swiss-Prot
Match: Q8UE22 (30S ribosomal protein S19 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=rpsS PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-13
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 4  RSIWKGSFVDAFLL-RMKKKRDPLLNR--KIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 63
          RS+WKG FVD +LL + +K R+   N   KIWSRRS+ILP+FV  +  +YNG   V   +
Sbjct: 3  RSVWKGPFVDGYLLTKAEKVRESGRNEVIKIWSRRSTILPQFVGLTFGVYNGSKHVPVSV 62

Query: 64 TEGRVGHKFGEFASTR 77
           E  VGHKFGEF+ TR
Sbjct: 63 NEDMVGHKFGEFSPTR 78

[Close]
BLAST of CmoCh12G007490 vs. ExPASy TrEMBL
Match: D5I3F0 (Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-1 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 9.3e-43
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQ 96
          TEGRVGHKFGEFA TRKRRLSRTNIG GKKRGESQ
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGESQ 95

[Close]
BLAST of CmoCh12G007490 vs. ExPASy TrEMBL
Match: D5I3G6 (Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 9.3e-43
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQ 96
          TEGRVGHKFGEFA TRKRRLSRTNIG GKKRGESQ
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGESQ 95

[Close]
BLAST of CmoCh12G007490 vs. ExPASy TrEMBL
Match: D5I3A0 (Ribosomal protein S19 OS=Citrullus lanatus OX=3654 GN=rps19-1 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 7.9e-42
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 0 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKTSVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTSVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG 93
          TEGR+GHKFGEFASTRKRRLSRTNIG GKK G
Sbjct: 61 TEGRIGHKFGEFASTRKRRLSRTNIGPGKKGG 92

[Close]
BLAST of CmoCh12G007490 vs. ExPASy TrEMBL
Match: A0A7D6C0E4 (Ribosomal protein S19 OS=Luffa acutangula OX=56866 GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.3e-41
Identity = 88/92 (95.65%), Postives = 89/92 (96.74%), Query Frame = 0 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKG FVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKTSVRCKI
Sbjct: 1  MPRRSIWKGCFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTSVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG 93
          TEGRVGHKFGEFASTRKRRLSRTNIG GKK G
Sbjct: 61 TEGRVGHKFGEFASTRKRRLSRTNIGPGKKGG 92

[Close]
BLAST of CmoCh12G007490 vs. ExPASy TrEMBL
Match: D5I3D4 (Ribosomal protein S19 OS=Citrullus lanatus OX=3654 GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.5e-40
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 0 

Query: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
          MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG 93
          TEGRVGHKFGEFA TRKRRLSRTNIG GKK G
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPGKKGG 92

[Close]
BLAST of CmoCh12G007490 vs. TAIR 10
Match: AT5G47320.1 (ribosomal protein S19 )

HSP 1 Score: 117.9 bits (294), Expect = 7.1e-27
Identity = 57/77 (74.03%), Postives = 66/77 (85.71%), Query Frame = 0 

Query: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKI 60
           M  RS+WK  FVDAFL+   KK++  LNRKIWSRRS+ILP++VDS+VRIYNGKT VRCKI
Sbjct: 131 MMSRSVWKDPFVDAFLM---KKKNAALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 61  TEGRVGHKFGEFASTRK 78
           TEG+VGHKFGEFA TRK
Sbjct: 191 TEGKVGHKFGEFAFTRK 204

[Close]
BLAST of CmoCh12G007490 vs. TAIR 10
Match: ATCG00820.1 (ribosomal protein S19 )

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 0 

Query: 4  RSIWKGSFVDAFLLRMKKKRDPLLNRKI---WSRRSSILPKFVDSSVRIYNGKTSVRCKI 63
          RS+ K  FV   LLR  +K +    ++I   WSR S+I+P  +  ++ I+NG+  +   I
Sbjct: 3  RSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYI 62

Query: 64 TEGRVGHKFGEFAST 76
           +  VGHK GEF+ T
Sbjct: 63 IDLMVGHKLGEFSPT 77

The following BLAST results are available for this feature:
BLAST of CmoCh12G007490 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P275271.6e-3987.10Ribosomal protein S19, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS19 PE=2 SV... [more]
P396971.0e-2574.0340S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS1... [more]
P268741.9e-1662.16Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS19 P... [more]
Q2RQW41.1e-1352.6330S ribosomal protein S19 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.... [more]
Q8UE221.5e-1352.6330S ribosomal protein S19 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=1... [more]
BLAST of CmoCh12G007490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
D5I3F09.3e-4395.79Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-1 PE=3 SV=1[more]
D5I3G69.3e-4395.79Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-2 PE=3 SV=1[more]
D5I3A07.9e-4295.65Ribosomal protein S19 OS=Citrullus lanatus OX=3654 GN=rps19-1 PE=3 SV=1[more]
A0A7D6C0E42.3e-4195.65Ribosomal protein S19 OS=Luffa acutangula OX=56866 GN=rps19-2 PE=3 SV=1[more]
D5I3D41.5e-4094.57Ribosomal protein S19 OS=Citrullus lanatus OX=3654 GN=rps19-2 PE=3 SV=1[more]
BLAST of CmoCh12G007490 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G47320.17.1e-2774.03ribosomal protein S19 [more]
ATCG00820.11.1e-0637.33ribosomal protein S19 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002222Ribosomal protein S19/S15PRINTSPR00975RIBOSOMALS19coord: 63..78
score: 55.24
coord: 51..63
score: 38.96
coord: 31..50
score: 39.68
IPR002222Ribosomal protein S19/S15PFAMPF00203Ribosomal_S19coord: 4..78
e-value: 1.8E-21
score: 75.8
IPR002222Ribosomal protein S19/S15PANTHERPTHR11880RIBOSOMAL PROTEIN S19P FAMILY MEMBERcoord: 2..89
IPR002222Ribosomal protein S19/S15HAMAPMF_00531Ribosomal_S19coord: 2..90
score: 18.076313
IPR023575Ribosomal protein S19/S15, superfamilyGENE3D3.30.860.1030s Ribosomal Protein S19; Chain Acoord: 1..90
e-value: 4.5E-24
score: 86.2
IPR023575Ribosomal protein S19/S15, superfamilySUPERFAMILY54570Ribosomal protein S19coord: 3..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..117
NoneNo IPR availablePANTHERPTHR11880:SF3640S RIBOSOMAL PROTEIN S19, MITOCHONDRIALcoord: 2..89
IPR020934Ribosomal protein S19 conserved sitePROSITEPS00323RIBOSOMAL_S19coord: 51..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G007490.1CmoCh12G007490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome