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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCACATAATGGAGAAGCAGTACCACCAGTACCAGATCTTAATACAGCCATTCTTCAAGCAATTCAAGGTATGATGGAAATGATGATGGAAGATAGACAAGAAAGAACGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGCACAAGAAAGACAAGTTGATGGTAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAACCTAGAAGGATGGAAAGAGTACATGAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAGTGGAAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTAGCTATTGCTGAATTTACCAATCATGCTGGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGGATCCAAAAGAGACATGGGAAGAACTTAAAGAAGCCATGAGAAAAAGGTATGTTCCAAAACATTATGAAAGAAATTTGAAAACTAAATTGCAAGGTTTGAGGCAAGGAACAAAAAGTGTGGCGGAATATTATCAAGAGATGGAGACTATGATGGAAAGAGCAAATGTTAGAGAAGAATAAGAAGATACCATGTTTAGATTCCTTGGAGGTTTGAATCGAGAAATTTCTCATCTTGTTGACAGAAATCCACCGCCATATCTGGAAGACATGTATCATTATGCTCTCAAAATTGAAGATCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAACACCTTTTCAAATTCTAAAACTTGGAACAAGGATAGTTTTGTGAATAGAAATGAATCAATGTCACCAAAAGAAGAGTTTGTGGCTGCTAAAAGAGTGGAGGCTGAGAGTTCCATTGGTAAAAAGAATGAAGCTTCAAAGACGGTAAAGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAAAGAGTGTTAA mRNA sequence ATGTCACATAATGGAGAAGCAGTACCACCAGTACCAGATCTTAATACAGCCATTCTTCAAGCAATTCAAGGTATGATGGAAATGATGATGGAAGATAGACAAGAAAGAACGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGCACAAGAAAGACAAGTTGATGATTCTGAGGCATACTTGCAGTGGAAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTAGCTATTGCTGAATTTACCAATCATGCTGGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGGATCCAAAAGAGACATGGGAAGAACTTAAAGAAGCCATGAGAAAAAGAAATCCACCGCCATATCTGGAAGACATGTATCATTATGCTCTCAAAATTGAAGATCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAACACCTTTTCAAATTCTAAAACTTGGAACAAGGATAGTTTTGTGAATAGAAATGAATCAATGTCACCAAAAGAAGAGTTTGTGGCTGCTAAAAGAGTGGAGGCTGAGAGTTCCATTGGTAAAAAGAATGAAGCTTCAAAGACGGTAAAGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAAAGAGTGTTAA Coding sequence (CDS) ATGTCACATAATGGAGAAGCAGTACCACCAGTACCAGATCTTAATACAGCCATTCTTCAAGCAATTCAAGGTATGATGGAAATGATGATGGAAGATAGACAAGAAAGAACGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGCACAAGAAAGACAAGTTGATGATTCTGAGGCATACTTGCAGTGGAAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTAGCTATTGCTGAATTTACCAATCATGCTGGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGGATCCAAAAGAGACATGGGAAGAACTTAAAGAAGCCATGAGAAAAAGAAATCCACCGCCATATCTGGAAGACATGTATCATTATGCTCTCAAAATTGAAGATCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAACACCTTTTCAAATTCTAAAACTTGGAACAAGGATAGTTTTGTGAATAGAAATGAATCAATGTCACCAAAAGAAGAGTTTGTGGCTGCTAAAAGAGTGGAGGCTGAGAGTTCCATTGGTAAAAAGAATGAAGCTTCAAAGACGGTAAAGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAAAGAGTGTTAA Protein sequence MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIVAQERQVDDSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRKRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMSKEC
Homology
BLAST of CmoCh12G007450 vs. ExPASy TrEMBL
Match: A0A6J1EVI6 (LOW QUALITY PROTEIN: uncharacterized protein LOC111438459 OS=Cucurbita moschata OX=3662 GN=LOC111438459 PE=4 SV=1) HSP 1 Score: 360.9 bits (925), Expect = 4.0e-96 Identity = 213/313 (68.05%), Postives = 219/313 (69.97%), Query Frame = 0
Query: 1 MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIVAQERQ- 60
MSHNGEAVPPVPDLNT ILQAIQGMMEMMMEDRQER AQQQRQERT + E V ++R
Sbjct: 1 MSHNGEAVPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTPRRMER-VHEDRDG 60
Query: 61 -----------VDDSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKS 120
DSEAYLQW+RKIEHVFDCNTYSENKKMRLAIAEFTNHA WYQHLKS
Sbjct: 61 GVKLKIPPFCVTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHA-XWYQHLKS 120
Query: 121 ERRRKEEDPKETWEELKEAMRK-------------------------------------- 180
ERRRKEEDP ETWEELKEAMRK
Sbjct: 121 ERRRKEEDPVETWEELKEAMRKRYVPKHYERNLKTKLQGLRQGTKSVAEYYQEMETMMER 180
Query: 181 ---------------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTS 237
RNPPPYLEDM HYALKIEDQLKEEKEHSKRYTS
Sbjct: 181 ANVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMCHYALKIEDQLKEEKEHSKRYTS 240
BLAST of CmoCh12G007450 vs. ExPASy TrEMBL
Match: A0A6J1DX75 (uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025303 PE=4 SV=1) HSP 1 Score: 296.2 bits (757), Expect = 1.2e-76 Identity = 177/309 (57.28%), Postives = 196/309 (63.43%), Query Frame = 0
Query: 6 EAVPPVP-DLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEG--IVAQERQVD- 65
+ VP VP D NT ILQAIQGMMEMMMEDRQER AQQQR+ER LQED+ + QERQV
Sbjct: 4 DGVPQVPQDPNTVILQAIQGMMEMMMEDRQERRAQQQREERALQEDDAFDLAEQERQVGG 63
Query: 66 -------------------------------------------DSEAYLQWKRKIEHVFD 125
D +AY QW+RKI HVFD
Sbjct: 64 RRNGRGRGRNNFANIMQPRRLEXLNENRDGGVKLKIPPFSGTADPDAYXQWERKIXHVFD 123
Query: 126 CNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK-------- 185
C TYSEN KMRLAIAEFTN AG+WYQ+LK ERRRKEEDP +TWEELKEAMR+
Sbjct: 124 CYTYSENTKMRLAIAEFTNXAGEWYQNLKLERRRKEEDPLDTWEELKEAMRRRYVPKHYE 183
Query: 186 -----------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNT 237
RNPP YLEDMYHYA+KIEDQ KEEKE+SKRYT + NT
Sbjct: 184 REEEDTMSRFLGGLNREIAHAVDRNPPSYLEDMYHYAVKIEDQSKEEKEYSKRYTYKANT 243
BLAST of CmoCh12G007450 vs. ExPASy TrEMBL
Match: A0A6J1DGU9 (uncharacterized protein LOC111020753 OS=Momordica charantia OX=3673 GN=LOC111020753 PE=4 SV=1) HSP 1 Score: 295.0 bits (754), Expect = 2.7e-76 Identity = 180/343 (52.48%), Postives = 201/343 (58.60%), Query Frame = 0
Query: 6 EAVPPVP-DLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEG--IVAQERQV-- 65
+ VP VP D N ILQAIQGMMEMMMEDRQER AQQQR+ER LQED+ + QERQV
Sbjct: 4 DGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDDAFDLAEQERQVGG 63
Query: 66 ------------------------------------------DDSEAYLQWKRKIEHVFD 125
D +AYLQW+RKIEHVFD
Sbjct: 64 RRNGRGRGRNNFANVMQPRRLERLNENRDXGVKLKIPPFSXTXDPDAYLQWERKIEHVFD 123
Query: 126 CNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK-------- 185
C TYSEN KMRLAIAEFTNH G+WYQ+LK ERRRKE DP +TWEELKEAMR+
Sbjct: 124 CYTYSENTKMRLAIAEFTNHXGEWYQNLKLERRRKEXDPLDTWEELKEAMRRRYVPKHYE 183
Query: 186 ---------------------------------------------------------RNP 237
RNP
Sbjct: 184 RDLKTKLQALRQGTKSVAEYYQEMETLMLKTQIREEEEDTMSRFLGGLNREIAHAVDRNP 243
BLAST of CmoCh12G007450 vs. ExPASy TrEMBL
Match: A0A5D3DRJ1 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 SV=1) HSP 1 Score: 289.7 bits (740), Expect = 1.1e-74 Identity = 179/348 (51.44%), Postives = 204/348 (58.62%), Query Frame = 0
Query: 1 MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIV---AQE 60
MSH+GE VP V D N AILQAIQGM+E+M E+RQER AQQQR+ R QEDEG+ A E
Sbjct: 1 MSHDGEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDLNAHE 60
Query: 61 RQVD--------------------------------------------DSEAYLQWKRKI 120
RQ+ DSE YLQW+RKI
Sbjct: 61 RQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPFTGTADSETYLQWERKI 120
Query: 121 EHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK--- 180
EHVFDCNT+SENKKM+LAIAEFTN+A +WY +LKSERRRKEEDP ETWEELKEAMRK
Sbjct: 121 EHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSERRRKEEDPIETWEELKEAMRKRFV 180
Query: 181 ------------------------------------------------------------ 237
Sbjct: 181 PKHYERDLKTKLQSLRQGTKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHL 240
BLAST of CmoCh12G007450 vs. ExPASy TrEMBL
Match: A0A5D3C3D3 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001490 PE=4 SV=1) HSP 1 Score: 289.7 bits (740), Expect = 1.1e-74 Identity = 179/348 (51.44%), Postives = 204/348 (58.62%), Query Frame = 0
Query: 1 MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIV---AQE 60
MSH+GE VP V D N AILQAIQGM+E+M E+RQER AQQQR+ R QEDEG+ A E
Sbjct: 1 MSHDGEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDLNAHE 60
Query: 61 RQVD--------------------------------------------DSEAYLQWKRKI 120
RQ+ DSE YLQW+RKI
Sbjct: 61 RQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPFTGTADSETYLQWERKI 120
Query: 121 EHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK--- 180
EHVFDCNT+SENKKM+LAIAEFTN+A +WY +LKSERRRKEEDP ETWEELKEAMRK
Sbjct: 121 EHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSERRRKEEDPIETWEELKEAMRKRFV 180
Query: 181 ------------------------------------------------------------ 237
Sbjct: 181 PKHYERDLKTKLQSLRQGTKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHL 240
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1EVI6 | 4.0e-96 | 68.05 | LOW QUALITY PROTEIN: uncharacterized protein LOC111438459 OS=Cucurbita moschata ... | [more] |
| A0A6J1DX75 | 1.2e-76 | 57.28 | uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
| A0A6J1DGU9 | 2.7e-76 | 52.48 | uncharacterized protein LOC111020753 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
| A0A5D3DRJ1 | 1.1e-74 | 51.44 | F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 ... | [more] |
| A0A5D3C3D3 | 1.1e-74 | 51.44 | F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001490 PE=4... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 163..182 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 189..212 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 32..51 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 156..212 |
| None | No IPR available | PANTHER | PTHR35046 | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN | coord: 32..136 |
| None | No IPR available | PANTHER | PTHR35046:SF6 | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN | coord: 32..136 |
| None | No IPR available | PANTHER | PTHR35046:SF6 | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN | coord: 137..236 |
| None | No IPR available | PANTHER | PTHR35046 | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN | coord: 137..236 |
| IPR001878 | Zinc finger, CCHC-type | PROSITE | PS50158 | ZF_CCHC | coord: 223..236
score: 8.845061 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
|
