Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACATAATGGAGAAGCAGTACCACCAGTACCAGATCTTAATACAGCCATTCTTCAAGCAATTCAAGGTATGATGGAAATGATGATGGAAGATAGACAAGAAAGAACGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGCACAAGAAAGACAAGTTGATG GTAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAACCTAGAAGGATGGAAAGAGTACATGAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAGTGGAAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTAGCTATTGCTGAATTTACCAATCATGCTGGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGGATCCAAAAGAGACATGGGAAGAACTTAAAGAAGCCATGAGAAAAAG GTATGTTCCAAAACATTATGAAAGAAATTTGAAAACTAAATTGCAAGGTTTGAGGCAAGGAACAAAAAGTGTGGCGGAATATTATCAAGAGATGGAGACTATGATGGAAAGAGCAAATGTTAGAGAAGAATAAGAAGATACCATGTTTAGATTCCTTGGAGGTTTGAATCGAGAAATTTCTCATCTTGTTGACAGAAATCCACCGCCATATCTGGAAGACATGTATCATTATGCTCTCAAAATTGAAGATCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAACACCTTTTCAAATTCTAAAACTTGGAACAAGGATAGTTTTGTGAATAGAAATGAATCAATGTCACCAAAAGAAGAGTTTGTGGCTGCTAAAAGAGTGGAGGCTGAGAGTTCCATTGGTAAAAAGAATGAAGCTTCAAAGACGGTAAAGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAAAGAGTGTTAA mRNA sequence
ATGTCACATAATGGAGAAGCAGTACCACCAGTACCAGATCTTAATACAGCCATTCTTCAAGCAATTCAAGGTATGATGGAAATGATGATGGAAGATAGACAAGAAAGAACGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGCACAAGAAAGACAAGTTGATGATTCTGAGGCATACTTGCAGTGGAAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTAGCTATTGCTGAATTTACCAATCATGCTGGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGGATCCAAAAGAGACATGGGAAGAACTTAAAGAAGCCATGAGAAAAAGAAATCCACCGCCATATCTGGAAGACATGTATCATTATGCTCTCAAAATTGAAGATCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAACACCTTTTCAAATTCTAAAACTTGGAACAAGGATAGTTTTGTGAATAGAAATGAATCAATGTCACCAAAAGAAGAGTTTGTGGCTGCTAAAAGAGTGGAGGCTGAGAGTTCCATTGGTAAAAAGAATGAAGCTTCAAAGACGGTAAAGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAAAGAGTGTTAA Coding sequence (CDS)
ATGTCACATAATGGAGAAGCAGTACCACCAGTACCAGATCTTAATACAGCCATTCTTCAAGCAATTCAAGGTATGATGGAAATGATGATGGAAGATAGACAAGAAAGAACGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGCACAAGAAAGACAAGTTGATGATTCTGAGGCATACTTGCAGTGGAAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTAGCTATTGCTGAATTTACCAATCATGCTGGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGGATCCAAAAGAGACATGGGAAGAACTTAAAGAAGCCATGAGAAAAAGAAATCCACCGCCATATCTGGAAGACATGTATCATTATGCTCTCAAAATTGAAGATCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAACACCTTTTCAAATTCTAAAACTTGGAACAAGGATAGTTTTGTGAATAGAAATGAATCAATGTCACCAAAAGAAGAGTTTGTGGCTGCTAAAAGAGTGGAGGCTGAGAGTTCCATTGGTAAAAAGAATGAAGCTTCAAAGACGGTAAAGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAAAGAGTGTTAA Protein sequence
MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIVAQERQVDDSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRKRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMSKEC
Homology
BLAST of CmoCh12G007450 vs. ExPASy TrEMBL
Match:
A0A6J1EVI6 (LOW QUALITY PROTEIN: uncharacterized protein LOC111438459 OS=Cucurbita moschata OX=3662 GN=LOC111438459 PE=4 SV=1)
HSP 1 Score: 360.9 bits (925), Expect = 4.0e-96
Identity = 213/313 (68.05%), Postives = 219/313 (69.97%), Query Frame = 0
Query: 1 MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIVAQERQ- 60 MSHNGEAVPPVPDLNT ILQAIQGMMEMMMEDRQER AQQQRQERT + E V ++R Sbjct: 1 MSHNGEAVPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTPRRMER-VHEDRDG 60 Query: 61 -----------VDDSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKS 120 DSEAYLQW+RKIEHVFDCNTYSENKKMRLAIAEFTNHA WYQHLKS Sbjct: 61 GVKLKIPPFCVTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHA-XWYQHLKS 120 Query: 121 ERRRKEEDPKETWEELKEAMRK-------------------------------------- 180 ERRRKEEDP ETWEELKEAMRK Sbjct: 121 ERRRKEEDPVETWEELKEAMRKRYVPKHYERNLKTKLQGLRQGTKSVAEYYQEMETMMER 180 Query: 181 ---------------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTS 237 RNPPPYLEDM HYALKIEDQLKEEKEHSKRYTS Sbjct: 181 ANVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMCHYALKIEDQLKEEKEHSKRYTS 240
BLAST of CmoCh12G007450 vs. ExPASy TrEMBL
Match:
A0A6J1DX75 (uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025303 PE=4 SV=1)
HSP 1 Score: 296.2 bits (757), Expect = 1.2e-76
Identity = 177/309 (57.28%), Postives = 196/309 (63.43%), Query Frame = 0
Query: 6 EAVPPVP-DLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEG--IVAQERQVD- 65 + VP VP D NT ILQAIQGMMEMMMEDRQER AQQQR+ER LQED+ + QERQV Sbjct: 4 DGVPQVPQDPNTVILQAIQGMMEMMMEDRQERRAQQQREERALQEDDAFDLAEQERQVGG 63 Query: 66 -------------------------------------------DSEAYLQWKRKIEHVFD 125 D +AY QW+RKI HVFD Sbjct: 64 RRNGRGRGRNNFANIMQPRRLEXLNENRDGGVKLKIPPFSGTADPDAYXQWERKIXHVFD 123 Query: 126 CNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK-------- 185 C TYSEN KMRLAIAEFTN AG+WYQ+LK ERRRKEEDP +TWEELKEAMR+ Sbjct: 124 CYTYSENTKMRLAIAEFTNXAGEWYQNLKLERRRKEEDPLDTWEELKEAMRRRYVPKHYE 183 Query: 186 -----------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNT 237 RNPP YLEDMYHYA+KIEDQ KEEKE+SKRYT + NT Sbjct: 184 REEEDTMSRFLGGLNREIAHAVDRNPPSYLEDMYHYAVKIEDQSKEEKEYSKRYTYKANT 243
BLAST of CmoCh12G007450 vs. ExPASy TrEMBL
Match:
A0A6J1DGU9 (uncharacterized protein LOC111020753 OS=Momordica charantia OX=3673 GN=LOC111020753 PE=4 SV=1)
HSP 1 Score: 295.0 bits (754), Expect = 2.7e-76
Identity = 180/343 (52.48%), Postives = 201/343 (58.60%), Query Frame = 0
Query: 6 EAVPPVP-DLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEG--IVAQERQV-- 65 + VP VP D N ILQAIQGMMEMMMEDRQER AQQQR+ER LQED+ + QERQV Sbjct: 4 DGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDDAFDLAEQERQVGG 63 Query: 66 ------------------------------------------DDSEAYLQWKRKIEHVFD 125 D +AYLQW+RKIEHVFD Sbjct: 64 RRNGRGRGRNNFANVMQPRRLERLNENRDXGVKLKIPPFSXTXDPDAYLQWERKIEHVFD 123 Query: 126 CNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK-------- 185 C TYSEN KMRLAIAEFTNH G+WYQ+LK ERRRKE DP +TWEELKEAMR+ Sbjct: 124 CYTYSENTKMRLAIAEFTNHXGEWYQNLKLERRRKEXDPLDTWEELKEAMRRRYVPKHYE 183 Query: 186 ---------------------------------------------------------RNP 237 RNP Sbjct: 184 RDLKTKLQALRQGTKSVAEYYQEMETLMLKTQIREEEEDTMSRFLGGLNREIAHAVDRNP 243
BLAST of CmoCh12G007450 vs. ExPASy TrEMBL
Match:
A0A5D3DRJ1 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 SV=1)
HSP 1 Score: 289.7 bits (740), Expect = 1.1e-74
Identity = 179/348 (51.44%), Postives = 204/348 (58.62%), Query Frame = 0
Query: 1 MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIV---AQE 60 MSH+GE VP V D N AILQAIQGM+E+M E+RQER AQQQR+ R QEDEG+ A E Sbjct: 1 MSHDGEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDLNAHE 60 Query: 61 RQVD--------------------------------------------DSEAYLQWKRKI 120 RQ+ DSE YLQW+RKI Sbjct: 61 RQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPFTGTADSETYLQWERKI 120 Query: 121 EHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK--- 180 EHVFDCNT+SENKKM+LAIAEFTN+A +WY +LKSERRRKEEDP ETWEELKEAMRK Sbjct: 121 EHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSERRRKEEDPIETWEELKEAMRKRFV 180 Query: 181 ------------------------------------------------------------ 237 Sbjct: 181 PKHYERDLKTKLQSLRQGTKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHL 240
BLAST of CmoCh12G007450 vs. ExPASy TrEMBL
Match:
A0A5D3C3D3 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001490 PE=4 SV=1)
HSP 1 Score: 289.7 bits (740), Expect = 1.1e-74
Identity = 179/348 (51.44%), Postives = 204/348 (58.62%), Query Frame = 0
Query: 1 MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIV---AQE 60 MSH+GE VP V D N AILQAIQGM+E+M E+RQER AQQQR+ R QEDEG+ A E Sbjct: 1 MSHDGEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDLNAHE 60 Query: 61 RQVD--------------------------------------------DSEAYLQWKRKI 120 RQ+ DSE YLQW+RKI Sbjct: 61 RQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPFTGTADSETYLQWERKI 120 Query: 121 EHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK--- 180 EHVFDCNT+SENKKM+LAIAEFTN+A +WY +LKSERRRKEEDP ETWEELKEAMRK Sbjct: 121 EHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSERRRKEEDPIETWEELKEAMRKRFV 180 Query: 181 ------------------------------------------------------------ 237 Sbjct: 181 PKHYERDLKTKLQSLRQGTKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHL 240
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A6J1EVI6 4.0e-96 68.05 LOW QUALITY PROTEIN: uncharacterized protein LOC111438459 OS=Cucurbita moschata ... [more]
A0A6J1DX75 1.2e-76 57.28 uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DGU9 2.7e-76 52.48 uncharacterized protein LOC111020753 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A5D3DRJ1 1.1e-74 51.44 F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 ... [more]
A0A5D3C3D3 1.1e-74 51.44 F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001490 PE=4... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
A T G T C A C A T A A T G G A G A A G C A G T A C C A C C A G T A C C A G A T C T T A A T A C A G C C A T T C T T C A A G C A A T T C A A G G T A T G A T G G A A A T G A T G A T G G A A G A T A G A C A A G A A A G A A C G G C G C A A C A A C A A A G A C A A G A A C G A A C A T T A C A A G A A G A T G A A G G T A T A G T A G C A C A A G A A A G A C A A G T T G A T G A T T C T G A G G C A T A C T T G C A G T G G A A A A G A A A G A T A G A G C A T G T G T T T G A T T G C A A C A C C T A T A G T G A A A A T A A G A A G A T G A G A C T A G C T A T T G C T G A A T T T A C C A A T C A T G C T G G T G A T T G G T A C C A A C A T C T C A A A T C C G A G A G A A G A A G A A A A G A G G A G G A T C C A A A A G A G A C A T G G G A A G A A C T T A A A G A A G C C A T G A G A A A A A G A A A T C C A C C G C C A T A T C T G G A A G A C A T G T A T C A T T A T G C T C T C A A A A T T G A A G A T C A A T T G A A G G A A G A A A A A G A G C A T T C A A A A A G G T A C A C A T C A C G A A C T A A C A C C T T T T C A A A T T C T A A A A C T T G G A A C A A G G A T A G T T T T G T G A A T A G A A A T G A A T C A A T G T C A C C A A A A G A A G A G T T T G T G G C T G C T A A A A G A G T G G A G G C T G A G A G T T C C A T T G G T A A A A A G A A T G A A G C T T C A A A G A C G G T A A A G G A G A A G T C T A G T T C T A T T C A A T G T T G G A A G T G C A A A G G G T T T G G A C A C A T G A G C A A A G A G T G T T A A 100 200 300 400 500 600 700 Score = Score = Score = Score = Score = Score = Score = Score = Score = 8.845061 Sequence mobidb-lite mobidb-lite mobidb-lite mobidb-lite PTHR35046 PTHR35046:SF6 PTHR35046:SF6 PTHR35046 PS50158
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 163..182
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 189..212
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 32..51
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 156..212
None No IPR available PANTHER PTHR35046 ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN coord: 32..136
None No IPR available PANTHER PTHR35046:SF6 ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN coord: 32..136
None No IPR available PANTHER PTHR35046:SF6 ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN coord: 137..236
None No IPR available PANTHER PTHR35046 ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN coord: 137..236
IPR001878 Zinc finger, CCHC-type PROSITE PS50158 ZF_CCHC coord: 223..236 score: 8.845061
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676
nucleic acid binding
molecular_function
GO:0008270
zinc ion binding