CmoCh12G007430 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G007430
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionCytochrome c oxidase subunit 1
LocationCmo_Chr12: 5846877 .. 5848905 (-)
RNA-Seq ExpressionCmoCh12G007430
SyntenyCmoCh12G007430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCCAACAACTGATCACGTGCATGTACCCGAAGGACCGATTACAAGAAGCAAGGTTAAGAAGATTCAAGAGGCCTATACATTGCATCTTCAAAAGCTAGCTAGTGTACCGGTTGAAACAAGGACTTTTGTGCCCAAAAATCTTTATAACATTCGCATATCAAATCAAGAAGATAATGGAGTGGCTGATATTGGAAAATAATTAGAAGACTTGCCTTTGGTAGTTGAATTACCAATTAAGGAAATTATTAATGCTTTATTTGCTTCCTTTTATATTTAATAGCATTTATTAGCATTTATTAGTGGTTGGTGGCTGAACTTTATTTTGTTAGGGTTATCTTTTAGACCTATTTAAAGGCATGTAATACTCATGTTTGAGAGATTTTAGTTGAATACAGAAAAAACCTTTGTGTTTTCTTGATACCCTTTTGGTGTTATTCTTTTTCAAATCTTGCTTTAGGTTTGATGTTAAACCGATTCATTGAATTAGTTTTGATCAAGCTAATTCTGGAGTGAATTGTCTTGGTATCTAAGAGTGACCATCATAGATTCCAAGTTCGATCTAAGAGTCATTCATCTTCTAACCAGCTCTTGGTTGGAATCAATCCGTTAAGTTAGCTTTCTCTGTGAGCGTTTTGCAAGGATTCTAGAAGGACCTCTAGCTTTGCAAATTCCAGCATTGTAGGCGCTTATCAAGAAGGGTACTCAATGTTCAAATCAAGGAAGAGAAATTTGAAGATCAAAGGGAAAACTTGTTCCACACAAGATGTTTGGTCAAAGGAAACCCATGCAGCTTGGTGATTGATAGTGGAAGTTGCACAAATGTGGTAAGCAGCTTCCTTGTAAAAAGACTTCAACTTTCTGTCCATCCCCATCCAAAACCATACAAACTTCATTGGTTAACAAACAAAGAAGAAATTAAGGTGAACTCCCAAGCTCTTATTTCTTTTACACTTGGAAGATATAAAGATGAAGTTCTTTGTGATGCCGTACCAATGCATGCGGGGGACATCTTATTCGGCCGACCCCTTGGCAATATGATAGAAAGGTAACATTTGATGGTTTGATGAACAAGTATACTTTTACTTTGTGTGGGAAGAAATTTACTTTACTTCCATTATCTCCATATGAAGTACATTGTGACCAATTGAAATTAGAGAAAAAAAGAAAAGAATATGAAAAACAACCGGGGAGAAAAGAAACTAAGGTAAAAGAGAGATAAGAGTGAAATAAAAGAGAAAAGTGAGGGGCAAAGGATGAGTGAAAACCAAGAGAGAAAAAAAAAATGATTTTGGTTGAATACAGAAAAAAACCTTTGTGTTTTCTTGATACCCTTTTGGTGTTATTCTTTTTCAAACCTTGCTTTAGGGTTGATGTTTAAACCGACTTATTGAATTAGTTTTGATCAAGCTAATTCTGGAGTGAATTGTCTTGGCATCTAAGAGTGACCATCATAGATTCCAAGTTCGATCTAAGAGCCATTCATCTTCTAACCCCCATGTTATTTGCTGTAGGGTTCATCTTTTTGTTCACCATAGGAGGACTCACTGGAATAGTCCCGGCAAATTCAGGGCTAGACATTGCTCTACATGATACTTATTATGTGGTTGTGCATTTCCATTATGTACTTTCTATTGGGTGGGTAAAATCTTTGGTCGGACATACCCTGAGACTTTAGGGCAAATCCATTTTTGGATCACTTTTTTGGGGTTAATTCGACCCTCTTTCCCATGCATTTCCTAGGGCTTTCGGGTATGCCACGACATATTCCAGATTATCCAGATGCTTACGCGGGATGGTATGCCCTTAGCAGTTTTGGCTCTTATATATTCGTAGTTGGGATTCGTCGTTTCTTCGTGGTCGTCACAATCACTTCAAGCAGTGGAAATAACAAAAGATGTGCTCCAAGTCCTTGGGCTGTTGAACAGAATTCAACCACACTGGAATGGATGGTACAAAGTCCTCCTGCTTTTCATACTTTTGGAGAACTTCCAGCTATCAAGGAGACGAAAAGCTATGTGAAGTAA

mRNA sequence

ATGAATCCAACAACTGATCACGTGCATGTACCCGAAGGACCGATTACAAGAAGCAAGGTTAAGAAGATTCAAGAGGCCTATACATTGCATCTTCAAAAGCTAGCTAGTGTACCGCATTGTAGGCGCTTATCAAGAAGGGTACTCAATGTTCAAATCAAGGAAGAGAAATTTGAAGATCAAAGGGAAAACTTGTTCCACACAAGATGTTTGGTCAAAGGAAACCCATGCAGCTTGGTGATTGATAGTGGAAGTTGCACAAATGTGGTAAGCAGCTTCCTTGTAAAAAGACTTCAACTTTCTGTCCATCCCCATCCAAAACCATACAAACTTCATTGGTTAACAAACAAAGAAGAAATTAAGGTGAACTCCCAAGCTCTTATTTCTTTTACACTTGGAAGATATAAAGATGAAGTTCTTTGTGATGCCGTACCAATGCATGCGGGGGACATCTTATTCGGCCGACCCCTTGGCAATATGATAGAAAGAGTGACCATCATAGATTCCAAGTTCGATCTAAGAGCCATTCATCTTCTAACCCCCATGTTATTTGCTGTAGGGTTCATCTTTTTGTTCACCATAGGAGGACTCACTGGAATAGTCCCGGCAAATTCAGGGCTAGACATTGCTCTACATGATACTTATTATGTGGTTGTGCATTTCCATTATGTACTTTCTATTGGGGCAAATCCATTTTTGGATCACTTTTTTGGGGTTAATTCGACCCTCTTTCCCATGCATTTCCTAGGGCTTTCGGGTATGCCACGACATATTCCAGATTATCCAGATGCTTACGCGGGATGGTATGCCCTTAGCAGTTTTGGCTCTTATATATTCGTAGTTGGGATTCGTCGTTTCTTCGTGGTCGTCACAATCACTTCAAGCAGTGGAAATAACAAAAGATGTGCTCCAAGTCCTTGGGCTGTTGAACAGAATTCAACCACACTGGAATGGATGGTACAAAGTCCTCCTGCTTTTCATACTTTTGGAGAACTTCCAGCTATCAAGGAGACGAAAAGCTATGTGAAGTAA

Coding sequence (CDS)

ATGAATCCAACAACTGATCACGTGCATGTACCCGAAGGACCGATTACAAGAAGCAAGGTTAAGAAGATTCAAGAGGCCTATACATTGCATCTTCAAAAGCTAGCTAGTGTACCGCATTGTAGGCGCTTATCAAGAAGGGTACTCAATGTTCAAATCAAGGAAGAGAAATTTGAAGATCAAAGGGAAAACTTGTTCCACACAAGATGTTTGGTCAAAGGAAACCCATGCAGCTTGGTGATTGATAGTGGAAGTTGCACAAATGTGGTAAGCAGCTTCCTTGTAAAAAGACTTCAACTTTCTGTCCATCCCCATCCAAAACCATACAAACTTCATTGGTTAACAAACAAAGAAGAAATTAAGGTGAACTCCCAAGCTCTTATTTCTTTTACACTTGGAAGATATAAAGATGAAGTTCTTTGTGATGCCGTACCAATGCATGCGGGGGACATCTTATTCGGCCGACCCCTTGGCAATATGATAGAAAGAGTGACCATCATAGATTCCAAGTTCGATCTAAGAGCCATTCATCTTCTAACCCCCATGTTATTTGCTGTAGGGTTCATCTTTTTGTTCACCATAGGAGGACTCACTGGAATAGTCCCGGCAAATTCAGGGCTAGACATTGCTCTACATGATACTTATTATGTGGTTGTGCATTTCCATTATGTACTTTCTATTGGGGCAAATCCATTTTTGGATCACTTTTTTGGGGTTAATTCGACCCTCTTTCCCATGCATTTCCTAGGGCTTTCGGGTATGCCACGACATATTCCAGATTATCCAGATGCTTACGCGGGATGGTATGCCCTTAGCAGTTTTGGCTCTTATATATTCGTAGTTGGGATTCGTCGTTTCTTCGTGGTCGTCACAATCACTTCAAGCAGTGGAAATAACAAAAGATGTGCTCCAAGTCCTTGGGCTGTTGAACAGAATTCAACCACACTGGAATGGATGGTACAAAGTCCTCCTGCTTTTCATACTTTTGGAGAACTTCCAGCTATCAAGGAGACGAAAAGCTATGTGAAGTAA

Protein sequence

MNPTTDHVHVPEGPITRSKVKKIQEAYTLHLQKLASVPHCRRLSRRVLNVQIKEEKFEDQRENLFHTRCLVKGNPCSLVIDSGSCTNVVSSFLVKRLQLSVHPHPKPYKLHWLTNKEEIKVNSQALISFTLGRYKDEVLCDAVPMHAGDILFGRPLGNMIERVTIIDSKFDLRAIHLLTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVVHFHYVLSIGANPFLDHFFGVNSTLFPMHFLGLSGMPRHIPDYPDAYAGWYALSSFGSYIFVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Homology
[Close]
BLAST of CmoCh12G007430 vs. ExPASy Swiss-Prot
Match: P12786 (Cytochrome c oxidase subunit 1 OS=Pisum sativum OX=3888 GN=COX1 PE=3 SV=2)

HSP 1 Score: 279.6 bits (714), Expect = 4.6e-74
Identity = 148/195 (75.90%), Postives = 151/195 (77.44%), Query Frame = 0 

Query: 174 AIHLLTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVVHFHYVLSIGA----- 233
           +I   TPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVV HFHYVLS+GA     
Sbjct: 333 SIQYKTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVAHFHYVLSMGAVFALF 392

Query: 234 ---------------------NPFLDHFFGVNSTLFPMHFLGLSGMPRHIPDYPDAYAGW 293
                                  F   FFGVN TLFPMHFLGLSGMPR IPDYPDAYAGW
Sbjct: 393 AGFHYWVGKIFGRTYPETLGKIHFWITFFGVNLTLFPMHFLGLSGMPRRIPDYPDAYAGW 452

Query: 294 YALSSFGSYIFVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHT 343
            ALSSFGSYI VVGIRRFFVVVTITSSSGNN   A  PWAVEQNSTTLEW+VQSPPAFHT
Sbjct: 453 NALSSFGSYISVVGIRRFFVVVTITSSSGNNITRANIPWAVEQNSTTLEWLVQSPPAFHT 512

[Close]
BLAST of CmoCh12G007430 vs. ExPASy Swiss-Prot
Match: P60620 (Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 7.9e-74
Identity = 147/195 (75.38%), Postives = 150/195 (76.92%), Query Frame = 0 

Query: 174 AIHLLTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVVHFHYVLSIGA----- 233
           +I   TPMLFAVGFIFLFTIGGLTGIV ANSGLDIALHDTYYVV HFHYVLS+GA     
Sbjct: 333 SIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFALF 392

Query: 234 ---------------------NPFLDHFFGVNSTLFPMHFLGLSGMPRHIPDYPDAYAGW 293
                                  F   FFGVN T FPMHFLGLSGMPR IPDYPDAYAGW
Sbjct: 393 AGFYYWVGKIFGRTYPETLGQIHFWITFFGVNLTFFPMHFLGLSGMPRRIPDYPDAYAGW 452

Query: 294 YALSSFGSYIFVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHT 343
            ALSSFGSYI VVGI  FFVVVTIT SSGNNKRCAPSPWA+E NSTTLEWMVQSPPAFHT
Sbjct: 453 NALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWALELNSTTLEWMVQSPPAFHT 512

[Close]
BLAST of CmoCh12G007430 vs. ExPASy Swiss-Prot
Match: P60621 (Cytochrome c oxidase subunit 1 OS=Raphanus sativus OX=3726 GN=COX1 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 7.9e-74
Identity = 147/195 (75.38%), Postives = 150/195 (76.92%), Query Frame = 0 

Query: 174 AIHLLTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVVHFHYVLSIGA----- 233
           +I   TPMLFAVGFIFLFTIGGLTGIV ANSGLDIALHDTYYVV HFHYVLS+GA     
Sbjct: 333 SIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFALF 392

Query: 234 ---------------------NPFLDHFFGVNSTLFPMHFLGLSGMPRHIPDYPDAYAGW 293
                                  F   FFGVN T FPMHFLGLSGMPR IPDYPDAYAGW
Sbjct: 393 AGFYYWVGKIFGRTYPETLGQIHFWITFFGVNLTFFPMHFLGLSGMPRRIPDYPDAYAGW 452

Query: 294 YALSSFGSYIFVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHT 343
            ALSSFGSYI VVGI  FFVVVTIT SSGNNKRCAPSPWA+E NSTTLEWMVQSPPAFHT
Sbjct: 453 NALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWALELNSTTLEWMVQSPPAFHT 512

[Close]
BLAST of CmoCh12G007430 vs. ExPASy Swiss-Prot
Match: P08743 (Cytochrome c oxidase subunit 1 OS=Oenothera berteroana OX=3950 GN=COX1 PE=3 SV=2)

HSP 1 Score: 275.8 bits (704), Expect = 6.6e-73
Identity = 143/195 (73.33%), Postives = 149/195 (76.41%), Query Frame = 0 

Query: 174 AIHLLTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVVHFHYVLSIGA----- 233
           +I   TPMLFAVG IFLFT+GGL GIVPANSGLDIALHDTYY   HFHYVLS+GA     
Sbjct: 333 SIQYKTPMLFAVGSIFLFTVGGLAGIVPANSGLDIALHDTYYAGAHFHYVLSMGAVFALF 392

Query: 234 ---------------------NPFLDHFFGVNSTLFPMHFLGLSGMPRHIPDYPDAYAGW 293
                                  F   FFGVN T FPMHFLGLSGMPR IPDYP++YAGW
Sbjct: 393 AGFRYWVGKIFGRTYPETLGQIHFWITFFGVNPTFFPMHFLGLSGMPRPIPDYPESYAGW 452

Query: 294 YALSSFGSYIFVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHT 343
            ALSSFGSYI VVGIR FFVVVTITSSSGNNKRCAPSPWAVE+NSTTLEWMVQSPPAFHT
Sbjct: 453 NALSSFGSYISVVGIRCFFVVVTITSSSGNNKRCAPSPWAVEKNSTTLEWMVQSPPAFHT 512

[Close]
BLAST of CmoCh12G007430 vs. ExPASy Swiss-Prot
Match: P07506 (Cytochrome c oxidase subunit 1 OS=Glycine max OX=3847 GN=COX1 PE=3 SV=3)

HSP 1 Score: 275.8 bits (704), Expect = 6.6e-73
Identity = 147/195 (75.38%), Postives = 150/195 (76.92%), Query Frame = 0 

Query: 174 AIHLLTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVVHFHYVLSIGA----- 233
           +I   TPMLFAVGFIFLFTIGGLTGIV ANSGLDIALHDTYYVV HFHYVLS+GA     
Sbjct: 333 SIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFALF 392

Query: 234 ---------------------NPFLDHFFGVNSTLFPMHFLGLSGMPRHIPDYPDAYAGW 293
                                  F   FFGVN TLFPMHFLGLSGMPR IPDYPDAYAGW
Sbjct: 393 AGFHYWVGKIFGRTYPETLGQIHFWITFFGVNLTLFPMHFLGLSGMPRRIPDYPDAYAGW 452

Query: 294 YALSSFGSYIFVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHT 343
            ALSSFGSYI VVGIRRFFVVVTITSSSGNN   A  PWAVEQNSTTLEW+VQSPPAFHT
Sbjct: 453 NALSSFGSYISVVGIRRFFVVVTITSSSGNNITRANIPWAVEQNSTTLEWLVQSPPAFHT 512

[Close]
BLAST of CmoCh12G007430 vs. ExPASy TrEMBL
Match: A0A0X8GIK9 (Cytochrome c oxidase subunit 1 OS=Croton texensis OX=504260 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 3.0e-76
Identity = 153/195 (78.46%), Postives = 155/195 (79.49%), Query Frame = 0 

Query: 174 AIHLLTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVVHFHYVLSIGA----- 233
           +I   TPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVV HFHYVLS+GA     
Sbjct: 333 SIQYKTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVAHFHYVLSMGAVFALF 392

Query: 234 ---------------------NPFLDHFFGVNSTLFPMHFLGLSGMPRHIPDYPDAYAGW 293
                                  F   FFGVN T FPMHFLGLSGMPR IPDYPDAYAGW
Sbjct: 393 AGFHYWVGKIFGRTYPETLGQIHFWITFFGVNPTFFPMHFLGLSGMPRRIPDYPDAYAGW 452

Query: 294 YALSSFGSYIFVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHT 343
            ALSSFGSYI VVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHT
Sbjct: 453 NALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHT 512

[Close]
BLAST of CmoCh12G007430 vs. ExPASy TrEMBL
Match: B9U3L8 (Cytochrome c oxidase subunit 1 OS=Carica papaya OX=3649 GN=cox1 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 6.7e-76
Identity = 153/195 (78.46%), Postives = 155/195 (79.49%), Query Frame = 0 

Query: 174 AIHLLTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVVHFHYVLSIGA----- 233
           +I   TPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVV HFHYVLS+GA     
Sbjct: 333 SIQYKTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVAHFHYVLSMGAVFALF 392

Query: 234 ---------------------NPFLDHFFGVNSTLFPMHFLGLSGMPRHIPDYPDAYAGW 293
                                  F   FFGVN TLFPMHFLGLSGMPR IPDYPDAYAGW
Sbjct: 393 AGFHYWVGKIFGRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGW 452

Query: 294 YALSSFGSYIFVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHT 343
            ALSSFGSYI VVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTT EWMVQSPPAFHT
Sbjct: 453 NALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTPEWMVQSPPAFHT 512

[Close]
BLAST of CmoCh12G007430 vs. ExPASy TrEMBL
Match: A0A109RUC7 (Cytochrome c oxidase subunit 1 OS=Senna marilandica OX=1789066 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 6.7e-76
Identity = 152/195 (77.95%), Postives = 155/195 (79.49%), Query Frame = 0 

Query: 174 AIHLLTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVVHFHYVLSIGA----- 233
           +I   TPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYY V HFHYVLS+GA     
Sbjct: 333 SIQYKTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYAVAHFHYVLSMGAVFALF 392

Query: 234 ---------------------NPFLDHFFGVNSTLFPMHFLGLSGMPRHIPDYPDAYAGW 293
                                  F   FFGVN TLFPMHFLGLSGMPR IPDYPDAYAGW
Sbjct: 393 AGFHYWVGKIFGRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGW 452

Query: 294 YALSSFGSYIFVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHT 343
            ALSSFGSYI VVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEW+VQSPPAFHT
Sbjct: 453 NALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWLVQSPPAFHT 512

[Close]
BLAST of CmoCh12G007430 vs. ExPASy TrEMBL
Match: A0A2Z4HGM6 (Cytochrome c oxidase subunit 1 OS=Senna occidentalis OX=126820 GN=cox1 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 6.7e-76
Identity = 152/195 (77.95%), Postives = 155/195 (79.49%), Query Frame = 0 

Query: 174 AIHLLTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVVHFHYVLSIGA----- 233
           +I   TPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYY V HFHYVLS+GA     
Sbjct: 333 SIQYKTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYAVAHFHYVLSMGAVFALF 392

Query: 234 ---------------------NPFLDHFFGVNSTLFPMHFLGLSGMPRHIPDYPDAYAGW 293
                                  F   FFGVN TLFPMHFLGLSGMPR IPDYPDAYAGW
Sbjct: 393 AGFHYWVGKIFGRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGW 452

Query: 294 YALSSFGSYIFVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHT 343
            ALSSFGSYI VVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEW+VQSPPAFHT
Sbjct: 453 NALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWLVQSPPAFHT 512

[Close]
BLAST of CmoCh12G007430 vs. ExPASy TrEMBL
Match: A0A2Z4HGL6 (Cytochrome c oxidase subunit 1 OS=Senna tora OX=362788 GN=cox1 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 6.7e-76
Identity = 152/195 (77.95%), Postives = 155/195 (79.49%), Query Frame = 0 

Query: 174 AIHLLTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVVHFHYVLSIGA----- 233
           +I   TPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYY V HFHYVLS+GA     
Sbjct: 333 SIQYKTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYAVAHFHYVLSMGAVFALF 392

Query: 234 ---------------------NPFLDHFFGVNSTLFPMHFLGLSGMPRHIPDYPDAYAGW 293
                                  F   FFGVN TLFPMHFLGLSGMPR IPDYPDAYAGW
Sbjct: 393 AGFHYWVGKIFGRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGW 452

Query: 294 YALSSFGSYIFVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHT 343
            ALSSFGSYI VVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEW+VQSPPAFHT
Sbjct: 453 NALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWLVQSPPAFHT 512

[Close]
BLAST of CmoCh12G007430 vs. TAIR 10
Match: ATMG01360.1 (cytochrome oxidase )

HSP 1 Score: 278.9 bits (712), Expect = 5.6e-75
Identity = 147/195 (75.38%), Postives = 150/195 (76.92%), Query Frame = 0 

Query: 174 AIHLLTPMLFAVGFIFLFTIGGLTGIVPANSGLDIALHDTYYVVVHFHYVLSIGA----- 233
           +I   TPMLFAVGFIFLFTIGGLTGIV ANSGLDIALHDTYYVV HFHYVLS+GA     
Sbjct: 333 SIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFALF 392

Query: 234 ---------------------NPFLDHFFGVNSTLFPMHFLGLSGMPRHIPDYPDAYAGW 293
                                  F   FFGVN T FPMHFLGLSGMPR IPDYPDAYAGW
Sbjct: 393 AGFYYWVGKIFGRTYPETLGQIHFWITFFGVNLTFFPMHFLGLSGMPRRIPDYPDAYAGW 452

Query: 294 YALSSFGSYIFVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHT 343
            ALSSFGSYI VVGI  FFVVVTIT SSGNNKRCAPSPWA+E NSTTLEWMVQSPPAFHT
Sbjct: 453 NALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWALELNSTTLEWMVQSPPAFHT 512

The following BLAST results are available for this feature:
BLAST of CmoCh12G007430 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P127864.6e-7475.90Cytochrome c oxidase subunit 1 OS=Pisum sativum OX=3888 GN=COX1 PE=3 SV=2[more]
P606207.9e-7475.38Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1[more]
P606217.9e-7475.38Cytochrome c oxidase subunit 1 OS=Raphanus sativus OX=3726 GN=COX1 PE=3 SV=1[more]
P087436.6e-7373.33Cytochrome c oxidase subunit 1 OS=Oenothera berteroana OX=3950 GN=COX1 PE=3 SV=2[more]
P075066.6e-7375.38Cytochrome c oxidase subunit 1 OS=Glycine max OX=3847 GN=COX1 PE=3 SV=3[more]
BLAST of CmoCh12G007430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0X8GIK93.0e-7678.46Cytochrome c oxidase subunit 1 OS=Croton texensis OX=504260 PE=3 SV=1[more]
B9U3L86.7e-7678.46Cytochrome c oxidase subunit 1 OS=Carica papaya OX=3649 GN=cox1 PE=3 SV=1[more]
A0A109RUC76.7e-7677.95Cytochrome c oxidase subunit 1 OS=Senna marilandica OX=1789066 PE=3 SV=1[more]
A0A2Z4HGM66.7e-7677.95Cytochrome c oxidase subunit 1 OS=Senna occidentalis OX=126820 GN=cox1 PE=3 SV=1[more]
A0A2Z4HGL66.7e-7677.95Cytochrome c oxidase subunit 1 OS=Senna tora OX=362788 GN=cox1 PE=3 SV=1[more]
BLAST of CmoCh12G007430 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG01360.15.6e-7575.38cytochrome oxidase [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000883Cytochrome c oxidase subunit IPRINTSPR01165CYCOXIDASEIcoord: 183..201
score: 69.71
coord: 211..230
score: 75.14
IPR000883Cytochrome c oxidase subunit IPFAMPF00115COX1coord: 174..227
e-value: 4.3E-14
score: 52.2
IPR000883Cytochrome c oxidase subunit IPANTHERPTHR10422CYTOCHROME C OXIDASE SUBUNIT 1coord: 234..337
coord: 175..228
IPR036927Cytochrome c oxidase-like, subunit I superfamilyGENE3D1.20.210.10coord: 231..342
e-value: 7.3E-29
score: 102.4
IPR036927Cytochrome c oxidase-like, subunit I superfamilyGENE3D1.20.210.10coord: 166..230
e-value: 1.7E-18
score: 68.2
IPR036927Cytochrome c oxidase-like, subunit I superfamilySUPERFAMILY81442Cytochrome c oxidase subunit I-likecoord: 175..334
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 44..165
e-value: 1.6E-7
score: 33.0
NoneNo IPR availablePANTHERPTHR10422:SF18CYTOCHROME C OXIDASE SUBUNIT 1coord: 234..337
coord: 175..228
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 67..155
e-value: 3.88588E-13
score: 62.354
IPR023616Cytochrome c oxidase-like, subunit I domainPROSITEPS50855COX1coord: 164..335
score: 21.940161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G007430.1CmoCh12G007430.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0015990 electron transport coupled proton transport
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0009060 aerobic respiration
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0045277 respiratory chain complex IV
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0020037 heme binding
molecular_function GO:0046872 metal ion binding