Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATCTTTGCTCGAGAATTGGGAGTTCCTATCGTAATGCACGACTACTCCACAGGTGGATTCACTGCAAATACTAGCTTGGCTCATTATTGCCGAGATAATGGTCTACTTCTTCACATTCACCGTGCAATGCATGTCGTTATTCATAGATAGAAGAATCATGGTATGTGCTTCCCTTCTGTGTACTAGCTAAAGGGTTACGTTTGTCTGGTGGAGACCATATTCCCGCTGGTACCGTAGTAGGTAAACTTCAAGGGAAAGAGACATCACTTTCTTTAGGCTTTGTTGATTTATACTACGTGATGATTCTCTTGAAAAAGATCGAACGGTATTTATTTCACTCAAGATTGGGTCTCTTTCTTTACCAGGTGTTCTGTCAGTGGCTTCCGGTGGTATTCACATTTGGGATATGCCTGCTCTAACCGAGATGGAGATGATTCTGTACTCCAATTCGGCGGAGGAACTTTGGGGCTGGGGGGAATGCACCAGGTGCTGTAGCTAACCGAGTAGCTCTAGAAGGATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTGAATTATCGATGAGGCTAGTAACTGGAGTCCTGAACTAG
mRNA sequence
ATGGCTATCTTTGCTCGAGAATTGGGAGTTCCTATCGTAATGCACGACTACTCCACAGGTGGATTCACTGCAAATACTAGCTTGGCTCATTATTGCCGAGATAATGGTCTACTTCTTCACATTCACCGTGCAATGCATGTCATAGAAGAATCATGGTATGTGCTTCCCTTCTGTGTACTAGCTAAAGGGTTACGTTTGTCTGGTGGAGACCATATTCCCGCTGGTACCGTAGTAGGTAAACTTCAAGGGAAAGAGACATCACTTTCTTTAGGCTTTGTTGATTTATACTACGTGATGATTCTCTTGAAAAAGATCGAACGGAACTTTGGGGCTGGGGGGAATGCACCAGGTGCTGTAGCTAACCGAGTAGCTCTAGAAGGATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTGAATTATCGATGAGGCTAGTAACTGGAGTCCTGAACTAG
Coding sequence (CDS)
ATGGCTATCTTTGCTCGAGAATTGGGAGTTCCTATCGTAATGCACGACTACTCCACAGGTGGATTCACTGCAAATACTAGCTTGGCTCATTATTGCCGAGATAATGGTCTACTTCTTCACATTCACCGTGCAATGCATGTCATAGAAGAATCATGGTATGTGCTTCCCTTCTGTGTACTAGCTAAAGGGTTACGTTTGTCTGGTGGAGACCATATTCCCGCTGGTACCGTAGTAGGTAAACTTCAAGGGAAAGAGACATCACTTTCTTTAGGCTTTGTTGATTTATACTACGTGATGATTCTCTTGAAAAAGATCGAACGGAACTTTGGGGCTGGGGGGAATGCACCAGGTGCTGTAGCTAACCGAGTAGCTCTAGAAGGATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTGAATTATCGATGAGGCTAGTAACTGGAGTCCTGAACTAG
Protein sequence
MAIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVIEESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVMILLKKIERNFGAGGNAPGAVANRVALEGCVQARNEGRDLAREGELSMRLVTGVLN
Homology
BLAST of CmoCh12G007370 vs. ExPASy Swiss-Prot
Match:
Q8MD78 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Amorphophallus titanum OX=175755 GN=rbcL PE=3 SV=1)
HSP 1 Score: 183.3 bits (464), Expect = 2.0e-45
Identity = 107/194 (55.15%), Postives = 119/194 (61.34%), Query Frame = 0
Query: 2 AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCV 61
A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH + + ++ + F V
Sbjct: 248 AVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKYHGMHFRV 307
Query: 62 LAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVMILLKKIER------------ 121
LAK LR+SGGDHI AGTVVGKL+G E ++LGFVDL + K R
Sbjct: 308 LAKALRMSGGDHIHAGTVVGKLEG-EREMTLGFVDLLRDDYIEKDRSRGIFFTQDWVSMP 367
Query: 122 ----------------------------NFGAG------GNAPGAVANRVALEGCVQARN 148
FG G GNAPGAVANRVALE CVQARN
Sbjct: 368 GVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN 427
BLAST of CmoCh12G007370 vs. ExPASy Swiss-Prot
Match:
Q07209 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Ailanthus altissima OX=23810 GN=rbcL PE=3 SV=1)
HSP 1 Score: 182.2 bits (461), Expect = 4.5e-45
Identity = 108/194 (55.67%), Postives = 118/194 (60.82%), Query Frame = 0
Query: 2 AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCV 61
A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH + + + + F V
Sbjct: 244 AVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRV 303
Query: 62 LAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVMILLKKIER------------ 121
LAK LRLSGGDHI AGTVVGKL+G E ++LGFVDL + K R
Sbjct: 304 LAKALRLSGGDHIHAGTVVGKLEG-ERDITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLP 363
Query: 122 ----------------------------NFGAG------GNAPGAVANRVALEGCVQARN 148
FG G GNAPGAVANRVALE CVQARN
Sbjct: 364 GVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN 423
BLAST of CmoCh12G007370 vs. ExPASy Swiss-Prot
Match:
O19872 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Bixa orellana OX=66672 GN=rbcL PE=3 SV=2)
HSP 1 Score: 182.2 bits (461), Expect = 4.5e-45
Identity = 108/194 (55.67%), Postives = 118/194 (60.82%), Query Frame = 0
Query: 2 AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCV 61
A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH + + + + F V
Sbjct: 245 AVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRV 304
Query: 62 LAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVMILLKKIER------------ 121
LAK LRLSGGDHI AGTVVGKL+G E ++LGFVDL + K R
Sbjct: 305 LAKALRLSGGDHIHAGTVVGKLEG-ERDITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLP 364
Query: 122 ----------------------------NFGAG------GNAPGAVANRVALEGCVQARN 148
FG G GNAPGAVANRVALE CVQARN
Sbjct: 365 GVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN 424
BLAST of CmoCh12G007370 vs. ExPASy Swiss-Prot
Match:
P93913 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Liriope muscari OX=39529 GN=rbcL PE=3 SV=1)
HSP 1 Score: 182.2 bits (461), Expect = 4.5e-45
Identity = 107/194 (55.15%), Postives = 118/194 (60.82%), Query Frame = 0
Query: 2 AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCV 61
A+FARELG PIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH + + + + F V
Sbjct: 247 AVFARELGAPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRV 306
Query: 62 LAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVMILLKKIER------------ 121
LAKGLR+SGGDHI AGTVVGKL+G E ++LGFVDL + K R
Sbjct: 307 LAKGLRMSGGDHIHAGTVVGKLEG-EREITLGFVDLLRDDFIEKDRSRGIFFTQDWVSMP 366
Query: 122 ----------------------------NFGAG------GNAPGAVANRVALEGCVQARN 148
FG G GNAPGAVANRVALE CVQARN
Sbjct: 367 GVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN 426
BLAST of CmoCh12G007370 vs. ExPASy Swiss-Prot
Match:
P93869 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Tamarindus indica OX=58860 GN=rbcL PE=3 SV=1)
HSP 1 Score: 182.2 bits (461), Expect = 4.5e-45
Identity = 108/194 (55.67%), Postives = 118/194 (60.82%), Query Frame = 0
Query: 2 AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCV 61
A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH + + + + F V
Sbjct: 245 AVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRV 304
Query: 62 LAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVMILLKKIER------------ 121
LAK LRLSGGDHI AGTVVGKL+G E ++LGFVDL + K R
Sbjct: 305 LAKALRLSGGDHIHAGTVVGKLEG-EREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLP 364
Query: 122 ----------------------------NFGAG------GNAPGAVANRVALEGCVQARN 148
FG G GNAPGAVANRVALE CVQARN
Sbjct: 365 GVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN 424
BLAST of CmoCh12G007370 vs. ExPASy TrEMBL
Match:
O20319 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Pericopsis mooniana OX=53917 GN=rbcL PE=3 SV=1)
HSP 1 Score: 188.3 bits (477), Expect = 2.3e-44
Identity = 113/202 (55.94%), Postives = 123/202 (60.89%), Query Frame = 0
Query: 2 AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCV 61
A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH + + + + F V
Sbjct: 244 AVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRV 303
Query: 62 LAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVMILLKKIER------------ 121
LAK LRLSGGDHI AGTVVGKL+G E ++LGFVDL + K R
Sbjct: 304 LAKALRLSGGDHIHAGTVVGKLEG-EREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLP 363
Query: 122 ----------------------------NFGAG------GNAPGAVANRVALEGCVQARN 155
FG G GNAPGAVANRVALE CVQARN
Sbjct: 364 GVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN 423
BLAST of CmoCh12G007370 vs. ExPASy TrEMBL
Match:
A0A0J8B172 (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_029470 PE=4 SV=1)
HSP 1 Score: 188.3 bits (477), Expect = 2.3e-44
Identity = 102/149 (68.46%), Postives = 115/149 (77.18%), Query Frame = 0
Query: 2 AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCV 61
A+FARELGVPIVMHDY TGGFTANT+LAHY RDNGLLLHIHRAMH + + + + FCV
Sbjct: 20 AVFARELGVPIVMHDYLTGGFTANTTLAHYGRDNGLLLHIHRAMHAVIDRQKNHGMHFCV 79
Query: 62 LAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVMILLKKIERNFGAG------G 121
LAK LRLSGGDHI +GT+VGKL+G E ++LGFVDL +K E FG G G
Sbjct: 80 LAKALRLSGGDHIYSGTIVGKLEG-ERDITLGFVDLLR-DDYTEKTEVAFGGGTLGHPWG 139
Query: 122 NAPGAVANRVALEGCVQARNEGRDLAREG 143
NAPGAVANRVALE CVQARNEGR+LA EG
Sbjct: 140 NAPGAVANRVALEACVQARNEGRNLATEG 166
BLAST of CmoCh12G007370 vs. ExPASy TrEMBL
Match:
G7JG19 (Ribulose bisphosphate carboxylase large chain OS=Medicago truncatula OX=3880 GN=MTR_4g051270 PE=3 SV=1)
HSP 1 Score: 188.0 bits (476), Expect = 3.0e-44
Identity = 107/178 (60.11%), Postives = 119/178 (66.85%), Query Frame = 0
Query: 2 AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCV 61
A+FARELGVPIVMHDY TGGFTANT+LAHYCRDNGLLLHIHRAMH + + + + F V
Sbjct: 254 AVFARELGVPIVMHDYLTGGFTANTTLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRV 313
Query: 62 LAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVMILLKKIER------------ 121
LAK LR+SGGDHI AGTVVGKL+G E ++LGFVDL + K R
Sbjct: 314 LAKALRMSGGDHIHAGTVVGKLEG-ERDITLGFVDLLRDDFVEKDRSRGGIHVWHMPALT 373
Query: 122 ---------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMRLVT 151
FG G GNAPGAVANRVALE CVQARNEGRDLAREG +R T
Sbjct: 374 EIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEIIREAT 430
BLAST of CmoCh12G007370 vs. ExPASy TrEMBL
Match:
O20297 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cercis canadensis OX=49801 GN=rbcL PE=3 SV=1)
HSP 1 Score: 188.0 bits (476), Expect = 3.0e-44
Identity = 113/202 (55.94%), Postives = 123/202 (60.89%), Query Frame = 0
Query: 2 AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCV 61
A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH + + + + F V
Sbjct: 244 AVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRV 303
Query: 62 LAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVMILLKKIER------------ 121
LAK LRLSGGDHI AGTVVGKL+G E ++LGFVDL + K R
Sbjct: 304 LAKALRLSGGDHIHAGTVVGKLEG-EREITLGFVDLLRDDFVEKDRSRGIYFTQDWVSLP 363
Query: 122 ----------------------------NFGAG------GNAPGAVANRVALEGCVQARN 155
FG G GNAPGAVANRVALE CVQARN
Sbjct: 364 GVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN 423
BLAST of CmoCh12G007370 vs. ExPASy TrEMBL
Match:
A5BIT1 (Ribulose bisphosphate carboxylase large chain OS=Vitis vinifera OX=29760 GN=VITISV_025530 PE=3 SV=1)
HSP 1 Score: 188.0 bits (476), Expect = 3.0e-44
Identity = 108/178 (60.67%), Postives = 118/178 (66.29%), Query Frame = 0
Query: 2 AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCV 61
A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH + + + + F V
Sbjct: 244 AVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRV 303
Query: 62 LAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVMILLKKIER------------ 121
LAK LRLSGGDHI AGTVVGKL+G E ++LGFVDL + K R
Sbjct: 304 LAKALRLSGGDHIHAGTVVGKLEG-EREITLGFVDLLRDDFVEKDRSRGIYFTQDWVSLP 363
Query: 122 ------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR 148
FG G GNAPGAVANRVALE CVQARNEGRDLAREG +R
Sbjct: 364 GVLPIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEIIR 420
BLAST of CmoCh12G007370 vs. TAIR 10
Match:
ATCG00490.1 (ribulose-bisphosphate carboxylases )
HSP 1 Score: 175.6 bits (444), Expect = 3.0e-44
Identity = 106/194 (54.64%), Postives = 116/194 (59.79%), Query Frame = 0
Query: 2 AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCV 61
A+FARELGVPIVMHDY TGGFTANTSL+HYCRDNGLLLHIHRAMH + + + + F V
Sbjct: 254 AVFARELGVPIVMHDYLTGGFTANTSLSHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRV 313
Query: 62 LAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVMILLKKIER------------ 121
LAK LRLSGGDHI AGTVVGKL+G S +LGFVDL + K R
Sbjct: 314 LAKALRLSGGDHIHAGTVVGKLEGDRES-TLGFVDLLRDDYVEKDRSRGIFFTQDWVSLP 373
Query: 122 ----------------------------NFGAG------GNAPGAVANRVALEGCVQARN 148
FG G GNAPGAVANRVALE CVQARN
Sbjct: 374 GVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN 433
BLAST of CmoCh12G007370 vs. TAIR 10
Match:
AT2G07732.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )
HSP 1 Score: 60.5 bits (145), Expect = 1.4e-09
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0
Query: 2 AIFARELGVPIVMHDYSTGGFTANTSLAH 31
A+FARELGVPIVMHDY TGGFTANTSLAH
Sbjct: 86 AVFARELGVPIVMHDYLTGGFTANTSLAH 114
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q8MD78 | 2.0e-45 | 55.15 | Ribulose bisphosphate carboxylase large chain (Fragment) OS=Amorphophallus titan... | [more] |
Q07209 | 4.5e-45 | 55.67 | Ribulose bisphosphate carboxylase large chain (Fragment) OS=Ailanthus altissima ... | [more] |
O19872 | 4.5e-45 | 55.67 | Ribulose bisphosphate carboxylase large chain (Fragment) OS=Bixa orellana OX=666... | [more] |
P93913 | 4.5e-45 | 55.15 | Ribulose bisphosphate carboxylase large chain (Fragment) OS=Liriope muscari OX=3... | [more] |
P93869 | 4.5e-45 | 55.67 | Ribulose bisphosphate carboxylase large chain (Fragment) OS=Tamarindus indica OX... | [more] |
Match Name | E-value | Identity | Description | |
O20319 | 2.3e-44 | 55.94 | Ribulose bisphosphate carboxylase large chain (Fragment) OS=Pericopsis mooniana ... | [more] |
A0A0J8B172 | 2.3e-44 | 68.46 | Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_029470 ... | [more] |
G7JG19 | 3.0e-44 | 60.11 | Ribulose bisphosphate carboxylase large chain OS=Medicago truncatula OX=3880 GN=... | [more] |
O20297 | 3.0e-44 | 55.94 | Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cercis canadensis OX... | [more] |
A5BIT1 | 3.0e-44 | 60.67 | Ribulose bisphosphate carboxylase large chain OS=Vitis vinifera OX=29760 GN=VITI... | [more] |
Match Name | E-value | Identity | Description | |
ATCG00490.1 | 3.0e-44 | 54.64 | ribulose-bisphosphate carboxylases | [more] |
AT2G07732.1 | 1.4e-09 | 93.10 | Ribulose bisphosphate carboxylase large chain, catalytic domain | [more] |