CmoCh12G007180 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G007180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr12: 5448390 .. 5450006 (+)
RNA-Seq Expression	CmoCh12G007180
Synteny	CmoCh12G007180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTATCTCTGTGTACGGAAGTTGCTGGCCGCTCAACTGTTCGAGCCTTTTCCTTTCTCCTATTATTAGAGTGGGGTGGTTGGTTCCGATTCGCCAAGGGTAGAATACCTGGTCGAAGGTCCAGTACAGTAGGTAGCCGGCGTTTTCGTTTTGGCTCCCGAGCGAGAACGAGAAATAGGCGATGCACCATCCTTGCTGCTACGTACGTTGACCTTGACTTGACAGATTCATCCAATGTAACCCACACTAAAAGGAGGACCACAAGCTCGGGGCTCGACGAAAGGTCAAGTATCACAGCATGTTGAAACTGATTGGGGTTAGCAGTGAAAGAAAGAGCCCGGCATTCATTTCTTCATTCATCTGAATAGCTTAGTCTACTAAAATCAAAGGGGGACCAGCCTCATCGTGGTAATTAATTAATTATAGGACATCTTTGATCGTTCACCTCTAATGTGACACGTTCCCTACCAGTTATATGATCAAGGGGATCAGTCGTCCAGCGCTTTCTTTTTCTTCCGGGGAGGCAAAGTAGTCCCCTCTACTGATCGAACCCCCTTTCTCTAATAGGAGGTCTTCGTAAACATGTTAAAGGGCTCCTGTCTTCGGCGGTCACCTTTCCAAGACTGAGAAGAACATCTGGGCAAGGGAAAGGGCAGTGCGCCTGGTGCAAATGGCTTGATTTTTTCATGATATACCAATCAGACAGAATGGAGGGCCCCCGTACATGATTGATATAATCACTACGTAGTGGTGGGGTTGATGCGAGAGAGGCATGAGTGCAGTTCGATCTTGTGGTGTATTCGTTTGCAGTGAGTAGGGCTTCTCGTTGATTAGTTCGCCTCCGCTCGAGGGAAAGGTCTCCATTCCTACGGCGGGTTTGTCAACGAACGCGTCTCGGGCCGGGAACTTGATCCCCCAAAAAGGAAGGGGTCTCTTTCCTCCCCCGATGATAGAGGGCCAATTCTCGTTGCACAAGACGGTGCCGTCTCACTTCGAGTGCCTTCCTTCGTAGTCAAATCAGATAATACGGGCGATGTTACCTACCAAATCAAAGGCCTGCTAGGTGATCGAAATCGCTCAGGGCAGTGAGGACTAACTCACCTACTCCACTCCAACTCTCTCGTTTTTATCTCGATAAGACTGATAGTTCATTCAAAAGGTGACCCGCCGGGCTATAAGATGAGATACTGCTGTTGTACTACTTGTTGACTGGTAATAAAAAGCTTACGTAAAAACGGGAAGACTCTTGTTAACCCTCTCCTACGCTACTGGTGGACTCTTGCACAGAAAGGCCGACGGAAGCAACCAACCTTTCTTAGCGCGCTTTTCAAGTGCTTAGCTTCTGCTAGCGGCGCAAGGCCATAAAGTCAGTTCAGTTGGAAGCCTAAGCCAAGAAGGTACGAACGAAGTGCCGGGCCCTTTTAGAGTTTGAGAGATAGATAGGGTAGGGGGGCGGCTTGATTGTGATAGTCATTTCGAACATCTCTCCCCTTCTTTTCTCTTAGCGTGCACAGTTTGCTTGCATGCCGCTTTAGGCACATCTCTCTTTCTTAGTTTCACGCTGTCCTACCGTCAGTCAGTCTTTTAGTAAGCGTATAGTTGCAGCTATTTAG

mRNA sequence

ATGAATCTATCTCTGTGTACGGAAGTTGCTGGCCGCTCAACTGTTCGAGCCTTTTCCTTTCTCCTATTATTAGAGTGGGGTGGTTGGTTCCGATTCGCCAAGGGTAGAATACCTGGTCGAAGGTCCAGTACAGTAGGAGGTCTTCGTAAACATGTTAAAGGGCTCCTGTCTTCGGCGGTCACCTTTCCAAGACTGAGAAGAACATCTGGGCAAGGGAAAGGGCAGTGCGCCTGGTGCAAATGGCTTGATTTTTTCATGATATACCAATCAGACAGAATGGAGGGCCCCCGTCTCCATTCCTACGGCGGGTTTGTCAACGAACGCGTCTCGGGCCGGGAACTTGATCCCCCAAAAAGGAAGGGGTCTCTTTCCTCCCCCGATGATAGAGGGCCAATTCTCGTTGCACAAGACGGTGCCGTCTCACTTCGAGTGCCTTCCTTCGTAGTCAAATCAGATAATACGGGCGATGTTACCTACCAAATCAAAGGCCTGCTAGTTTCACGCTGTCCTACCGTCAGTCAGTCTTTTAGTAAGCGTATAGTTGCAGCTATTTAG

Coding sequence (CDS)

ATGAATCTATCTCTGTGTACGGAAGTTGCTGGCCGCTCAACTGTTCGAGCCTTTTCCTTTCTCCTATTATTAGAGTGGGGTGGTTGGTTCCGATTCGCCAAGGGTAGAATACCTGGTCGAAGGTCCAGTACAGTAGGAGGTCTTCGTAAACATGTTAAAGGGCTCCTGTCTTCGGCGGTCACCTTTCCAAGACTGAGAAGAACATCTGGGCAAGGGAAAGGGCAGTGCGCCTGGTGCAAATGGCTTGATTTTTTCATGATATACCAATCAGACAGAATGGAGGGCCCCCGTCTCCATTCCTACGGCGGGTTTGTCAACGAACGCGTCTCGGGCCGGGAACTTGATCCCCCAAAAAGGAAGGGGTCTCTTTCCTCCCCCGATGATAGAGGGCCAATTCTCGTTGCACAAGACGGTGCCGTCTCACTTCGAGTGCCTTCCTTCGTAGTCAAATCAGATAATACGGGCGATGTTACCTACCAAATCAAAGGCCTGCTAGTTTCACGCTGTCCTACCGTCAGTCAGTCTTTTAGTAAGCGTATAGTTGCAGCTATTTAG

Protein sequence

MNLSLCTEVAGRSTVRAFSFLLLLEWGGWFRFAKGRIPGRRSSTVGGLRKHVKGLLSSAVTFPRLRRTSGQGKGQCAWCKWLDFFMIYQSDRMEGPRLHSYGGFVNERVSGRELDPPKRKGSLSSPDDRGPILVAQDGAVSLRVPSFVVKSDNTGDVTYQIKGLLVSRCPTVSQSFSKRIVAAI

Homology

[Close]

BLAST of CmoCh12G007180 vs. ExPASy TrEMBL
Match: A0A4D6LXD6 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g2612 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.2e-04
Identity = 33/54 (61.11%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 1  MNLSLCTE----VAGRSTVRA-FSFLLLLEWGGWFRFAKGRIPGRRSSTVGGLR 50
          MNL LCT       GRSTVRA +S       GGWFRF KGR+PGRRSSTVG  R
Sbjct: 1  MNLYLCTVRKLLAGGRSTVRAQYS-------GGWFRFDKGRMPGRRSSTVGSRR 47

[Close]

BLAST of CmoCh12G007180 vs. ExPASy TrEMBL
Match: A0A4D6L008 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g2291 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.2e-04
Identity = 33/54 (61.11%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 1  MNLSLCTE----VAGRSTVRA-FSFLLLLEWGGWFRFAKGRIPGRRSSTVGGLR 50
          MNL LCT       GRSTVRA +S       GGWFRF KGR+PGRRSSTVG  R
Sbjct: 1  MNLYLCTVRKLLAGGRSTVRAQYS-------GGWFRFDKGRMPGRRSSTVGSRR 47

The following BLAST results are available for this feature:

BLAST of CmoCh12G007180 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh12G007180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D6LXD6	8.2e-04	61.11	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g2612 PE=4 SV=...	[more]
A0A4D6L008	8.2e-04	61.11	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g2291 PE=4 SV=1	[more]

BLAST of CmoCh12G007180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G007180.1	CmoCh12G007180.1	mRNA