CmoCh12G007130 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G007130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Cytochrome c biogenesis B
Location	Cmo_Chr12: 5418002 .. 5420131 (+)
RNA-Seq Expression	CmoCh12G007130
Synteny	CmoCh12G007130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTCGAAACACGTAAGTCCATGGCTGTGTTTTTAAGTTAAAGGTTATGTTTTATGGAATTTAAATGAAGTCTTCCGCATTCAATGTTTATGGTATGTATACAGTAGCGACCTTAAATTAAGTGGAAAATTTCGGGTCGTTACACCTCTGTGTTTTCCTTTTCCTCCTGCACCCTTTCCTCGAAATGAGAAAGAAGATGGTACACTCGAATTGTATTATTTAAGTGCTTATTGCTTGGCAAAGATACTTCTACAATTGGTAGGTCACCGGGTTATTCAAATAAGTTGTGTTTTCTCTGGTTTTCCTATGTTCAAACTTCTGTACCAATTTGGTCGATCCGGAATGGATCGGTTAAACATTCTATTAGGGAGCCAGGTCTTGACTCTGTTGTGTGGTATTCATTCTCGTTCGGCTCTTGGAATCAATTCTATTAGGGAGCCAGGTCTTGACTCTGTTGTGTGGTATTCATTCTCGTTCGGCTCTTGGAATCACATCCAGTCGTGGTTGGAATAGCTCGAAAAATCCAACCACTTCACCTACTTCATTGCCCCAACCCTTTCTCGTACCTCTATTGAAACAGAATGGTTTCATGTTCCTTTATCGATTGGTTATTCCTCCCCGTTCGTCTCTCTTTTTCCAATTGCGGTCTCGATTAGTTTACAAGATTGAATGGCTAATTTGCCTCCGGACCCTAGATTCGATTGTTTGCCAAGAATGTTGAGCGGGGTATGTAAGCTGTGTATCTGGGAGGAAGTGAAAATCGGGGCTTTCGCTTTTTTGCATCCTGTTCTATTTTGGCAGCTACTGAAATGAAATAGGAATCTCTTTCCCACACCGAATCAAGATTGAATATATGTCAAATCTCTAGTGGTGTTGAAACCAACCAAGATGTCTGTCGTCCGGCCCGACCTCAGACTCTTTCTTCCCGACCTATTTGACCCTCTGGCTGCTGTTATTTAGGTGGTATCCCGAGATAGATGGAATTCCTCCCGGGAACACACGAAAGAAATATATGAACTGGGTAAATAGAAATGGAAAAGAGATGTTTCCAATTCATTCAAATCCAAAGCTTTTTCTACATCCATATGATCTACTAAAGTCGATCGGTATTGTCTATATAATGAAAGTAGATCTTGGTCTATAGAGTTCCAAGAAGGTAATAACTCCATCCTGTCCGATGCTTCTTGGGCCAAATACAATATACAAGTGGGACCTGCACTATGAGCAAGCTGTGCGAAAAACCGCTGATTTTTGCCAGGTTCGCAACAACTTGGGCCAAATGGGGTTCTACCGGGAAACTAGGGATTTTTGAGTTTGCGCCATTGGTTACTGGTCGAGCCACTGGAATGGAATGAGACCGCTGAGCATTTCTGTCTTCACAACTCTAAATTACTCTAAATTGTAACCCACCCAAAATTTATAACAATCAAACTTCATTCTTCTTCAATGTGGCATGAATTGAAACATCTTTTGATAATTTTGACAACCTTTTCTTCACATCTTCATTAAAGTATATTGTATGATTGATGTTTTTTGGTTCATATCAAAATCATTCTATTTTCTTTCATAGAATCCCGACAGGTGAATTAGAAGAAAGCATGGAGTTTGATTTGTGTGCATTAAAGTCCTTAGGCGCCTAAGATAATTGAAAGTGAAACAAAGCATGAGTTGGGGGAAAAAAACAAAATCAAGAGCTCAATCTAAAGGACAAGCTTAACGAATAAGAGAAAGAGAAAGAAAGTTTCTACTTTATCCCCTCCTTCATCAGATCTTGTAGAGACAGCAAGGACAGGGGGCGATCTCTATAGTCTTTCACCTGCGTTTTTCACTTATTTGACTTTGAGGTTATTCCCNNNNNNNNNNGGTACACGTCCACGATTACCTGTTAGGATTACACCGTTGGGAAAATGAAATGAAACGAAACGAAAAAGAAACGGAACGAAACGAAAGTTAGGTCCCATCATTTCATTGCATGTGATTGTTGCATTTAACCCCAATAGTGGGGTCACTTACTGAGTATTTCTTTAAATACTCAGGCCATGTGCTACTACATTTTTCAGGTTAAGGCAAGGCATTCCTGTACGGCTGACGACGGCATCGCAACTCGAGATCATGGCACATGCATAG

mRNA sequence

ATGTTTTCGAAACACGTCTTGACTCTGTTGTGTGGTATTCATTCTCGTTCGGCTCTTGGAATCACATCCAGTCGTGGTTGGAATAGCTCGAAAAATCCAACCACTTCACCTACTTCATTGCCCCAACCCTTTCTCGTACCTCTATTGAAACAGAATGGTTTCATGTTCCTTTATCGATTGGTTATTCCTCCCCGTTCGTCTCTCTTTTTCCAATTGCGGTGGTATCCCGAGATAGATGGAATTCCTCCCGGGAACACACGAAAGAAATATATGAACTGGAGTTCCAAGAAGGTAATAACTCCATCCTGTCCGATGCTTCTTGGGCCAAATACAATATACAAGTGGGACCTGCACTATGAGCAAGCTGTGCGAAAAACCGCTGATTTTTGCCAGGTTCGCAACAACTTGGGCCAAATGGGAATCCCGACAGGTGAATTAGAAGAAAGCATGGAGTTTGATTTGTGTGCATTAAAGCCATGTGCTACTACATTTTTCAGGTTAAGGCAAGGCATTCCTGTACGGCTGACGACGGCATCGCAACTCGAGATCATGGCACATGCATAG

Coding sequence (CDS)

ATGTTTTCGAAACACGTCTTGACTCTGTTGTGTGGTATTCATTCTCGTTCGGCTCTTGGAATCACATCCAGTCGTGGTTGGAATAGCTCGAAAAATCCAACCACTTCACCTACTTCATTGCCCCAACCCTTTCTCGTACCTCTATTGAAACAGAATGGTTTCATGTTCCTTTATCGATTGGTTATTCCTCCCCGTTCGTCTCTCTTTTTCCAATTGCGGTGGTATCCCGAGATAGATGGAATTCCTCCCGGGAACACACGAAAGAAATATATGAACTGGAGTTCCAAGAAGGTAATAACTCCATCCTGTCCGATGCTTCTTGGGCCAAATACAATATACAAGTGGGACCTGCACTATGAGCAAGCTGTGCGAAAAACCGCTGATTTTTGCCAGGTTCGCAACAACTTGGGCCAAATGGGAATCCCGACAGGTGAATTAGAAGAAAGCATGGAGTTTGATTTGTGTGCATTAAAGCCATGTGCTACTACATTTTTCAGGTTAAGGCAAGGCATTCCTGTACGGCTGACGACGGCATCGCAACTCGAGATCATGGCACATGCATAG

Protein sequence

MFSKHVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLPQPFLVPLLKQNGFMFLYRLVIPPRSSLFFQLRWYPEIDGIPPGNTRKKYMNWSSKKVITPSCPMLLGPNTIYKWDLHYEQAVRKTADFCQVRNNLGQMGIPTGELEESMEFDLCALKPCATTFFRLRQGIPVRLTTASQLEIMAHA

Homology

[Close]

BLAST of CmoCh12G007130 vs. ExPASy Swiss-Prot
Match: P93280 (Putative cytochrome c biogenesis ccmB-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMB PE=2 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-07
Identity = 35/74 (47.30%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 6   VLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLPQPFLVPLLKQN--------GFMFL 65
           VLTLLCGIHS  ALGITSS GWNSS+N TT PT LP       ++          G+ FL
Sbjct: 132 VLTLLCGIHSCLALGITSSSGWNSSQNLTTLPTLLPLTVFCTSIETEWFHVLLLIGYFFL 191

Query: 66  YRLVIPPRSSLFFQ 72
           +  + P   S+  Q
Sbjct: 192 FVSLFPISVSISLQ 205

[Close]

BLAST of CmoCh12G007130 vs. ExPASy Swiss-Prot
Match: P38454 (Putative cytochrome c biogenesis ccmB-like mitochondrial protein OS=Marchantia polymorpha OX=3197 GN=CCMB PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.1e-04
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 1   MFSKHVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP 42
           +    + TL+CGIHS  ALGITS+ GWNS +N TT PT LP
Sbjct: 195 IIGSQIFTLMCGIHSCLALGITSN-GWNSLQNLTTLPTLLP 234

[Close]

BLAST of CmoCh12G007130 vs. ExPASy TrEMBL
Match: A0A444X2Y8 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g102999 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 5.7e-29
Identity = 79/136 (58.09%), Postives = 89/136 (65.44%), Query Frame = 0


Query: 6   VLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLPQPFLVPLLKQNGFMFLYRLVIPPR 65
           V TLLCGIHSR ALGITSS GWNSS+NPTTSPTS P       ++   F  L  +     
Sbjct: 24  VFTLLCGIHSRLALGITSSSGWNSSQNPTTSPTSFPPTVSRTSIETEWFHVLSSI---GY 83

Query: 66  SSLFFQLRWYPEIDGIPPGNTRKKYMN-WSSKKVITPSCPMLLGPNTIYKWDLHYEQAVR 125
           SS F  L  +P    I   +  K  +  WS KKV TP+CPMLL PNTIYKWDLHYEQAVR
Sbjct: 84  SSPFVSL--FP--IAIDIAHIMKADLGPWSPKKVRTPTCPMLLRPNTIYKWDLHYEQAVR 143

Query: 126 KTADFCQVRNNLGQMG 141
           KTA F + RNNLG+MG
Sbjct: 144 KTASFFRFRNNLGEMG 152

[Close]

BLAST of CmoCh12G007130 vs. ExPASy TrEMBL
Match: A0A6S7MXW4 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS21098 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.0e-21
Identity = 57/68 (83.82%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 6   VLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLPQPFLVPLLKQNGFMFLYRLVIPPR 65
           VLT LCGIHSRSALGITSS G NSS+NP+TSPTSLPQPFLVPLLKQNGFMF +RLVIP R
Sbjct: 164 VLTFLCGIHSRSALGITSSSGGNSSQNPSTSPTSLPQPFLVPLLKQNGFMFFHRLVIPFR 223

Query: 66  SSLFFQLR 74
           S LF Q R
Sbjct: 224 SYLFLQFR 231

[Close]

BLAST of CmoCh12G007130 vs. ExPASy TrEMBL
Match: A0A6N2N4H3 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS398266 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.8e-21
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 6   VLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLPQPFLVPLLKQNGFMFLYRLVIPPR 65
           VLTL+CGIHSRSALGITSS GWNSS+NPTTSPT LPQ FLVPLLKQN FMF +RLVI  R
Sbjct: 474 VLTLMCGIHSRSALGITSSSGWNSSQNPTTSPTLLPQRFLVPLLKQNCFMFFHRLVISLR 533

Query: 66  SSLFFQLR 74
           S LFFQ R
Sbjct: 534 SYLFFQFR 541

[Close]

BLAST of CmoCh12G007130 vs. ExPASy TrEMBL
Match: A0A6J5VVW0 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49776 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-14
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 94  SSKKVITPSCPMLLGPNTIYKWDLHYEQAVRKTADFCQVRNNLGQMGIPTGELEESMEFD 153
           S KKV TP+CPMLL PNTIYKWDLHYEQAVRKTA F + RNNLG+MG       E+M+F 
Sbjct: 9   SPKKVRTPTCPMLLRPNTIYKWDLHYEQAVRKTASFFRFRNNLGEMGF----YRETMDFL 68

Query: 154 LCAL 158
           + A+
Sbjct: 69  VFAI 68

[Close]

BLAST of CmoCh12G007130 vs. ExPASy TrEMBL
Match: A0A453P263 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 6   VLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLPQPFLVPL 49
           VLTLLCGIHSRSALGITSS GWNSS+NPTTSPT LPQPF VPL
Sbjct: 98  VLTLLCGIHSRSALGITSSSGWNSSQNPTTSPTLLPQPFPVPL 140

[Close]

BLAST of CmoCh12G007130 vs. TAIR 10
Match: ATMG00110.1 (cytochrome C biogenesis 206 )

HSP 1 Score: 68.9 bits (167), Expect = 4.8e-12
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 6   VLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP 42
           VLTLLCGIHSRSALGITSS GWNSS+NPTTSPT LP
Sbjct: 132 VLTLLCGIHSRSALGITSSSGWNSSQNPTTSPTLLP 167

The following BLAST results are available for this feature:

BLAST of CmoCh12G007130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93280	1.2e-07	47.30	Putative cytochrome c biogenesis ccmB-like mitochondrial protein OS=Arabidopsis ...	[more]
P38454	2.1e-04	58.54	Putative cytochrome c biogenesis ccmB-like mitochondrial protein OS=Marchantia p...	[more]

BLAST of CmoCh12G007130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A444X2Y8	5.7e-29	58.09	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g102999 PE=3 SV=1	[more]
A0A6S7MXW4	2.0e-21	83.82	Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS21098 PE=3 SV=1	[more]
A0A6N2N4H3	9.8e-21	82.35	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS398266 PE=3 SV=...	[more]
A0A6J5VVW0	3.0e-14	65.63	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49776 PE=4 S...	[more]
A0A453P263	1.1e-11	90.70	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 S...	[more]

BLAST of CmoCh12G007130 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00110.1	4.8e-12	91.67	cytochrome C biogenesis 206	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003544	Cytochrome c-type biogenesis protein CcmB	PANTHER	PTHR30070	HEME EXPORTER PROTEIN B	coord: 6..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G007130.1	CmoCh12G007130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0015886	heme transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0016020	membrane
molecular_function	GO:0015232	heme transmembrane transporter activity