CmoCh12G006960 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G006960
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	Cmo_Chr12: 5335488 .. 5335960 (-)
RNA-Seq Expression	CmoCh12G006960
Synteny	CmoCh12G006960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCATGATTAGTAAGTCGATCCTTCACAGGTTGTTCGTAACTAGAGCTGGGTCAATTTACCGTTTTACCCCTAAAGTTACTTCTTGTTCCTTATGTCTCACTGATCCTCTAATGAACAATTGGTTTGTGGTCCAACCAGTAAACCGAATCCCTCTCAGGCCAATGAGAGGGTGGGGCCCCTTGTTCAAGACCTGGAGTCAGTGCTTAAGGGAACTACCTTTCTTCTATCCCTAAAAGTGGGTAGGAGTGAATTCCGTCTTGCACCCCACGTCTCTAGCCATTCACCCAGTCTTACCCCTGAAATGGGAGGCCTGTTGAGTCGGCGAACTAGAGCCACTCTCACCCATGCAAATCTAAGGATAATTCTGAATAAACAGGAGTTCATGGTTAGCTCAGGATTAAAACCGAGTTACCTAGGTTATCGAATGAAAAGAAAATCAGTCTCAACAGTAAACGACTTTATAAAGTGA

mRNA sequence

ATGACCATGATTAGTAAGTCGATCCTTCACAGTAAACCGAATCCCTCTCAGGCCAATGAGAGGGTGGGGCCCCTTGTTCAAGACCTGGAGTCAGTGCTTAAGGGAACTACCTTTCTTCTATCCCTAAAAGTGGGTAGGAGTGAATTCCGTCTTGCACCCCACGTCTCTAGCCATTCACCCAGTCTTACCCCTGAAATGGGAGGCCTGTTGAGTCGGCGAACTAGAGCCACTCTCACCCATGCAAATCTAAGGATAATTCTGAATAAACAGGAGTTCATGGTTAGCTCAGGATTAAAACCGAGTTACCTAGGTTATCGAATGAAAAGAAAATCAGTCTCAACAGTAAACGACTTTATAAAGTGA

Coding sequence (CDS)

ATGACCATGATTAGTAAGTCGATCCTTCACAGTAAACCGAATCCCTCTCAGGCCAATGAGAGGGTGGGGCCCCTTGTTCAAGACCTGGAGTCAGTGCTTAAGGGAACTACCTTTCTTCTATCCCTAAAAGTGGGTAGGAGTGAATTCCGTCTTGCACCCCACGTCTCTAGCCATTCACCCAGTCTTACCCCTGAAATGGGAGGCCTGTTGAGTCGGCGAACTAGAGCCACTCTCACCCATGCAAATCTAAGGATAATTCTGAATAAACAGGAGTTCATGGTTAGCTCAGGATTAAAACCGAGTTACCTAGGTTATCGAATGAAAAGAAAATCAGTCTCAACAGTAAACGACTTTATAAAGTGA

Protein sequence

MTMISKSILHSKPNPSQANERVGPLVQDLESVLKGTTFLLSLKVGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIILNKQEFMVSSGLKPSYLGYRMKRKSVSTVNDFIK

Homology

[Close]

BLAST of CmoCh12G006960 vs. ExPASy TrEMBL
Match: A0A5A7U348 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001380 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.3e-13
Identity = 49/93 (52.69%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 14  NPSQANERVGPLVQDLESVLKGTTFLLSLK-VGRSEFRLAPHVSSHSPSLTPEMGGLLSR 73
           NPS+ANE+VGPLVQDL+SVLKGTT+LLS K VG +       ++ HS  L+P+    L +
Sbjct: 49  NPSRANEKVGPLVQDLDSVLKGTTYLLSQKWVGVNSVLHPMSLAIHS-VLSPKWEA-LGQ 108

Query: 74  RTRATLTHANLRIILNKQEFMVSSGLKPSYLGY 106
           R +   T+ +LRI+ N+Q+F+VSSGL+ SYLG+
Sbjct: 109 RQKVARTYEDLRILSNEQKFIVSSGLRSSYLGH 139

[Close]

BLAST of CmoCh12G006960 vs. ExPASy TrEMBL
Match: A0A5D3CY86 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001000 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.1e-12
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 43  KVGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIILNKQEFMVSSGLKPSY 102
           K GRSEF  AP+V S+   LTPEMGGLL +R RA LT+A+LRI+LN+Q+F+VS GL+ SY
Sbjct: 808 KWGRSEFHFAPYVPSYPLDLTPEMGGLLGQRYRAALTYADLRILLNEQKFIVSLGLRSSY 867

Query: 103 LG 105
           LG
Sbjct: 868 LG 869

[Close]

BLAST of CmoCh12G006960 vs. ExPASy TrEMBL
Match: A0A5D3CRT6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00950 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.1e-07
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 23  GPLVQDLESVLKGTTFLLSLKVGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHAN 82
           GP VQDL+SVLKGTT+LL+LK       L P   +   SL+ +             T+A+
Sbjct: 5   GPYVQDLDSVLKGTTYLLTLKWVGVNSILLPMFPTIHLSLSLKWKAYWGNANELPFTYAD 64

Query: 83  LRIILNKQEFMVSSGLKPSYLGY 106
           LRII  +QEF VSSGL+ SYLG+
Sbjct: 65  LRIISCEQEFTVSSGLRLSYLGH 87

[Close]

BLAST of CmoCh12G006960 vs. ExPASy TrEMBL
Match: A0A5D3DRY2 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00550 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 14 NPSQANERVGPLVQDLESVLKGTTFLLSLKVGRSEFRLAPHVSSH 59
          NPS+ANE+VGPLVQDL+SVLKGTT+LLS K     F LAP+V S+
Sbjct: 36 NPSRANEKVGPLVQDLDSVLKGTTYLLSQKWVGVNFHLAPYVPSY 80

[Close]

BLAST of CmoCh12G006960 vs. ExPASy TrEMBL
Match: A0A5A7T9D5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00670 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 14  NPSQANERVGPLVQDLESVLKGTTFLLSLK-VGRSEFRLAPHVSSHSPSLTPEMGGLL 71
           NPS+ANE+VGPLVQDL+SVLKGTT+LLS K VG +       ++S+   L  EMGGLL
Sbjct: 49  NPSRANEKVGPLVQDLDSVLKGTTYLLSQKWVGVNSVLHPMSLTSYLLGLNLEMGGLL 106

The following BLAST results are available for this feature:

BLAST of CmoCh12G006960 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh12G006960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U348	6.3e-13	52.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CY86	4.1e-12	64.52	Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw...	[more]
A0A5D3CRT6	5.1e-07	46.99	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DRY2	1.1e-06	68.89	Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7T9D5	2.0e-06	60.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CmoCh12G006960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G006960.1	CmoCh12G006960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity