CmoCh12G006930 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G006930
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Retrotransposable element Tf2
Location	Cmo_Chr12: 5329472 .. 5330488 (-)
RNA-Seq Expression	CmoCh12G006930
Synteny	CmoCh12G006930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCTTTTGCGTATACTTTCAAATTCCTTGGATTTTAACTTGGAATTTTCAAATTAAAAAAACCGAAGACCAAATAAAACAAGTCTTCAAAACTATCAAAATCAAATGGTGGGATAAATATACTTATACCCACGCAGAAATCAAAGCGGTAAAGGTCTGGCTATCTGAGAATGGCCACCTTCAGGATTTATCCAAGAAGAGGACCTCCGAATTCCTTAATTCAAAGTCGAAGCTACTCGCTGCATTAGCCTAGACAACTTCTGAAGCTGATTTTCAAAAGCTTCTTCAAGAGGCCGCATCAGTCGGTTCGACGTCTTCTCCTTCTATTGTAGAAGAAGAAGATGAAGACACGATTTATGATCTCAATGATCCATTTTTGGATTCTCAACCACCTTTGTAAATATCATCATCTCAATGACTGAATAGTCGTTGAACTATTTAAAAAAAAAATCGTAAGTGAAATATGTCTCCTGACATATTCTCACTTTGCTTCTTCAACTTTCCATCTTTTGGATTTTTATTATTTTGGTTTTTCCTCTATTATTGATGTATCTTTTTCCTACTTTCATCATATTTTGGATGAATATGGCCTTCCTCTTTCATCAAGTTATTGATGTAAAAGGAGTTCCTATTTTCATTGAGAAATTGATGAATATGGAAAATGTAAAGCAATAACTTGATCCAAAAATCTTGCTTCTAAATCTTCAATCGTAAGAGGTAATCTAATTCTAGCCTTATCTCTTGGTTGATCCAAATTTCGTATAAGGAGGTGTTAATTACTTTGATTCAAAGGTTCTAGCTTCAACAAAAGCTTGGATCATTGGGCTGATGATTGGGGTTGTCTTATCACAAGTGCTTAAGTTTATCGAGTTGAATCAGTCAAAAGGGTTCGGTTGAGGAAGTAGGGACAGGAGAAAGATCTAGAATGTTTCATCTTGAGTTGAGTGTTTACAGGAGAAGTGAAAGAAGAAATAAGGATAAGGTTATGGAGAGAAGCAATGAGACCATAAGGTTC

mRNA sequence

ATGCGCTTTTGCGTATACTTTCAAATTCCTTGGATTTTAACTTGGAATTTTCAAATTAAAAAAACCGAAGACCAAATAAAACAAGTCTTCAAAACTATCAAAATCAAATGGTGGGATAAATATACTTATACCCACGCAGAAATCAAAGCGGTAAAGACAACTTCTGAAGCTGATTTTCAAAAGCTTCTTCAAGAGGCCGCATCAGTCGGTTCGACGTCTTCTCCTTCTATTGTAGAAGAAGAAGATGAAGACACGATTTATGATCTCAATGATCCATTTTTGGATTCTCAACCACCTTTGAGAAGTGAAAGAAGAAATAAGGATAAGGTTATGGAGAGAAGCAATGAGACCATAAGGTTC

Coding sequence (CDS)

ATGCGCTTTTGCGTATACTTTCAAATTCCTTGGATTTTAACTTGGAATTTTCAAATTAAAAAAACCGAAGACCAAATAAAACAAGTCTTCAAAACTATCAAAATCAAATGGTGGGATAAATATACTTATACCCACGCAGAAATCAAAGCGGTAAAGACAACTTCTGAAGCTGATTTTCAAAAGCTTCTTCAAGAGGCCGCATCAGTCGGTTCGACGTCTTCTCCTTCTATTGTAGAAGAAGAAGATGAAGACACGATTTATGATCTCAATGATCCATTTTTGGATTCTCAACCACCTTTGAGAAGTGAAAGAAGAAATAAGGATAAGGTTATGGAGAGAAGCAATGAGACCATAAGGTTC

Protein sequence

MRFCVYFQIPWILTWNFQIKKTEDQIKQVFKTIKIKWWDKYTYTHAEIKAVKTTSEADFQKLLQEAASVGSTSSPSIVEEEDEDTIYDLNDPFLDSQPPLRSERRNKDKVMERSNETIRF

Homology

[Close]

BLAST of CmoCh12G006930 vs. ExPASy TrEMBL
Match: A0A5A7U3G5 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 43/143 (30.07%), Postives = 66/143 (46.15%), Query Frame = 0


Query: 2   RFCVYFQIPWILTWNFQIKKTEDQIKQVFKTIKIKWWDKYTYTHAEIKAVK--------- 61
           RF +YFQIPWI  WNFQ+  +E+  K + K+++IKWW+K+ Y+H E+  +K         
Sbjct: 331 RFALYFQIPWIFCWNFQLGPSEN-FKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHL 390

Query: 62  --TTSEADFQKLLQEAASVGSTSSPSIVEE-------------EDEDTI----------- 99
              T + D   LL + A + + +  S  +E             +D D +           
Sbjct: 391 QDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNYVVNNVVVNRSDDNDDLPEDASPASVND 450

[Close]

BLAST of CmoCh12G006930 vs. ExPASy TrEMBL
Match: A0A5A7TBK1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00520 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 42/143 (29.37%), Postives = 65/143 (45.45%), Query Frame = 0


Query: 2   RFCVYFQIPWILTWNFQIKKTEDQIKQVFKTIKIKWWDKYTYTHAEIKAVK--------- 61
           RF +YFQIPWI  WNFQ+ ++    K + K+++IKWW+K+ Y+H E+  +K         
Sbjct: 331 RFALYFQIPWIFCWNFQL-ESSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHL 390

Query: 62  --TTSEADFQKLLQEAASVGSTSSPSIVEE-------------EDEDTI----------- 99
              T + D   LL + A + + +  S  +E             +D D +           
Sbjct: 391 QDMTRQEDEAFLLTKNAVISTLAGASTQQELNSVVNNVVVNLSDDNDDLLEDASPASVND 450

[Close]

BLAST of CmoCh12G006930 vs. ExPASy TrEMBL
Match: A0A5D3D2Q6 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00560 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 42/143 (29.37%), Postives = 65/143 (45.45%), Query Frame = 0


Query: 2   RFCVYFQIPWILTWNFQIKKTEDQIKQVFKTIKIKWWDKYTYTHAEIKAVK--------- 61
           RF +YFQIPWI  WNFQ+ ++    K + K+++IKWW+K+ Y+H E+  +K         
Sbjct: 331 RFALYFQIPWIFCWNFQL-ESSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHL 390

Query: 62  --TTSEADFQKLLQEAASVGSTSSPSIVEE-------------EDEDTI----------- 99
              T + D   LL + A + + +  S  +E             +D D +           
Sbjct: 391 QDMTRQEDEAFLLTKNAVISTLAGASTQQELNSVVNNVVVNLSDDNDDLLEDASPASVND 450

[Close]

BLAST of CmoCh12G006930 vs. ExPASy TrEMBL
Match: A0A5A7SS94 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003480 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.8e-07
Identity = 42/143 (29.37%), Postives = 65/143 (45.45%), Query Frame = 0


Query: 2   RFCVYFQIPWILTWNFQIKKTEDQIKQVFKTIKIKWWDKYTYTHAEIKAVK--------- 61
           RF +YFQIPWI  WNFQ+  +    K + K+++IKWW+K+ Y+H E+  +K         
Sbjct: 277 RFALYFQIPWIFCWNFQLGPS-GNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHL 336

Query: 62  --TTSEADFQKLLQEAASVGSTSSPSIVEE-------------EDEDTI----------- 99
              T++ D   LL + A + + +  S  +E             +D D +           
Sbjct: 337 QDMTTQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASLASVND 396

[Close]

BLAST of CmoCh12G006930 vs. ExPASy TrEMBL
Match: A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 42/143 (29.37%), Postives = 64/143 (44.76%), Query Frame = 0


Query: 2   RFCVYFQIPWILTWNFQIKKTEDQIKQVFKTIKIKWWDKYTYTHAEIKAVK--------- 61
           RF +YFQIPWI  WNFQ+  +    K + K+++IKWW+K+ Y+H E+  +K         
Sbjct: 277 RFALYFQIPWIFCWNFQLGPS-GNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHL 336

Query: 62  --TTSEADFQKLLQEAASVGSTSSPSIVEE-------------EDEDTI----------- 99
              T + D   LL + A + + +  S  +E             +D D +           
Sbjct: 337 QDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNN 396

The following BLAST results are available for this feature:

BLAST of CmoCh12G006930 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh12G006930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3G5	1.8e-07	30.07	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE...	[more]
A0A5A7TBK1	2.3e-07	29.37	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3D2Q6	2.3e-07	29.37	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SS94	8.8e-07	29.37	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7UVN1	1.5e-06	29.37	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of CmoCh12G006930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G006930.1	CmoCh12G006930.1	mRNA