CmoCh12G006480 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G006480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	single-stranded DNA-binding protein WHY1, chloroplastic-like
Location	Cmo_Chr12: 4168500 .. 4171625 (+)
RNA-Seq Expression	CmoCh12G006480
Synteny	CmoCh12G006480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCTCCCTAACCCTCGCCGAGATAGAATAGCCGCGAGGACAAAGCCGAAACCATGCTGCGTCTTCAATGGCTGTCTTCTTCCTTGCTTCCGCCATTAAACCCCCCCGAGCTCTGCGCACAACCCTGTAAGAACCCCAGACGATGCGGTTTCAACTCCTCTCGCCAACTCTTCACTCTCACCGCTACACGAAAACCTTCTCCAAAATGCCAGTACGCGTCCTGGAACACGCAGCAGCCTGCCTTCGAACCAGCCTCTCAGACCGATTCATTTTCGCCACAAACAAGCGCCGGCGGTACTTGCTTATCTGTTTTCTTTCTCTTTTTTTTTTTTTTTTGGAAGAACTTCGTATATCCTGTCGGTCATGGTGGCGGTGGAGAGGTGGATTTGATGCTATTAGGAAATTTGGTTTATGTTGGAACCAAAATGAAGTATATAGATCCGTTTGTGACATTGACGACATGCACGGTCGAATTATTATGACCTTGTTCGGTGTTTGTTTCTCTTCTCTCCCTCAAAGCTGGGATTATTTAGACATGGTTCAATTTCGAAGGGTTTCTCCCAATCCGAGGGGCTTTTTGAAGTTCCTTGTGTATTCTGTAACAGTTGTTTTTGATTTCTCGGGTTCTGAAGTATTATGGTTTGGCTTGTTTGTAGCTGCCGCGGCTTTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGAAAGGCTGCCCTGTCCATCGAGCCTAGGCCACCAGAGTTTACACCTATAGATGTATGTTTGACATGGATTCTATATTCATCACAAGAATATGTTCTTGCACTTAGTCATAGTACATTACAGGTCATTTTCTTTGTTTTTTTAGCATTGTAAGGTTATTAATCTCTTCCAAATTTTTCAGTCGGGGGCGTTCAAAGTATCCAGGCAAGGATTTGTAATGCTTCAGCTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTGTTCATTAAAACAGGCTGATATTTAACTCCTAAAGTTATTGAAGTTTCTGACTTAATGAGCTAAACTGAAATTCTAGCTTATGCTGATTACTATTCCACAGGCTTCATATTTGCCATCATAGATATGTGAAAATGTAGTATCATTTCCATTACTATGATGGAGTAGATGATATTGAAAATACTACAATCATTTTTCTGTTTACTAAAATCAAACTATTTTGATGAACTATAATTAGATGATGTCTTGAAAAGGTTAAAGTCATTGTGGATTTGAAATCACAATCTTCCTACTGTGAGAATGAGCTAAATTAGATTATACTTTCTTTTGTATATAGGTATTTTCATTATCACTGACAGAATTGGGAAGTTTAGTCGCCCTTGGCCCACGGGAGTCTTGCGAATTTTTCCATGATCCCTACAAGGGAAAAAGGTACTATCTGTTTACAATCTCAATCAAAATCTATACCATTAGTTTCTTCTGTTGTGCCATGCTCATGTTTATGTGTATTCCTTGGTTACCCCAAACATTTATACAGTCTGCCCAAGCGTGTTTTCTTAGTTCTTAGAATTGTATGATTGCATCACATTGAACATTGAAATTTGAAAACAATGATGTCTTGATCCCTGTAGGCTTTAGTAACCAAATACCACCTCCTCTCGCGGGTACATGCCGGCCGTTTCTCTTTACTAGCCAAACAAAATGTTTTTTACGTCATAAGTTATTTGTAAGGAAAGATTTGCAGGTTTGAAAACACACTATTTTATGATAACAAGAAATGGCAAAATATTTGTTCTACAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTCGAGCCTCTTCCAGATGGTTCTGGACATTTCTTCAATCTCAGTAAGTCTTGAATTGAAACCTCTATGATGCATTTGAGTTGAATATAAAGCTGAATTTGGCTACATCTCCATGTCCAACACGTGTCAGATACTTAGCCACCACAAATAGAATGCTAGCATAATAGAGATATGCATTAGACCCTAGTTGGACAAAGCAACCAATATTTCTTTGAGTGGAATGATGCTTGAGAAAGTGTTTCATTTTTTCCTTACCTTTTCTGTTCTATTTTGTTGCACAAGGCGTTCAGAACAAGCTAATCAACGTAGATGAGAGCATTTATATTCCCATCACCAAAGCCGAGTATACTGTACTTGTTGAGGCTTTCAAGGTAAAGTTCTTTCTTGTTTACTTTCTTTTCATGATTGTTTGGTTCATTCAGTATCAGTGATTGAGATTAAAGGAGAGAAAAGCTGTGTGTATGATTTGGATCAGGACAGTGGAAACTGCAAAAATTGAGAAAAAAGAACCTACTTAACTCACCAAAACTGAATTGGTCCGGTTGGTTTCAAGAACTCTTATTTGCTTGTTCAGTTTCATTAAGTTAAGAACTGAAGATTAGACAGTTAATTTGGGATCGGTCACTTTTTGTAACGGCCCAAGCCCATCGCTAGCCAGATATTATCCTCTTTGTGCTTTTCCTTTTTGGGTTCCCATCAAAGTTTTTAAAACGCTTCTTCTAGGTAGATGTTTCACACTTTTATAAAGAATGTTTCATTTTCCTCCCCAATCGATATGGGATCCAAGCTGAACTGACGAACTCTTGTACTCTTACTTGTGATGACCCTTTTGTTTTCTCCAAATTATATTCCCAAACTGAACTGACGAACTCTTGTACTCTTACTTGTGATAACCCTTTCGTTTTCTCCAAATTATATTCCTTTCGTTTTCTCCAAATTATGTGAATATAATTGATGAATTGGATGTTTAAGGTTGGGTTTGTGATAGGGTTGAATTCACTGATTTGCAGTTTATCTTGCCGCACCTCATGGGATGGCATACCATTGCGAACACCACGATGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCGAATCCCAGATATGGTGGTGAGTCGGGTGGCTTCGAATGGAGTAGATAGTTTCTACTTTTCCTTAGGCTGAAGATGATGATTGTAGTTTATTTCAGTTATCCTGATCTTTCACTAGTTATGATAGTTTAGTCGCTTTTTTTTTTTTTTTTTATCTATGGGTCTACATTTTCCTAATATATCTCTAAACCCAAATATTTTAATATTATATATGTTTTTTGTA

mRNA sequence

TGTCTCCCTAACCCTCGCCGAGATAGAATAGCCGCGAGGACAAAGCCGAAACCATGCTGCGTCTTCAATGGCTGTCTTCTTCCTTGCTTCCGCCATTAAACCCCCCCGAGCTCTGCGCACAACCCTGTAAGAACCCCAGACGATGCGGTTTCAACTCCTCTCGCCAACTCTTCACTCTCACCGCTACACGAAAACCTTCTCCAAAATGCCAGTACGCGTCCTGGAACACGCAGCAGCCTGCCTTCGAACCAGCCTCTCAGACCGATTCATTTTCGCCACAAACAAGCGCCGGCGCTGCCGCGGCTTTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGAAAGGCTGCCCTGTCCATCGAGCCTAGGCCACCAGAGTTTACACCTATAGATTCGGGGGCGTTCAAAGTATCCAGGCAAGGATTTGTAATGCTTCAGCTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTTTCATTATCACTGACAGAATTGGGAAGTTTAGTCGCCCTTGGCCCACGGGAGTCTTGCGAATTTTTCCATGATCCCTACAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTCGAGCCTCTTCCAGATGGTTCTGGACATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTAGATGAGAGCATTTATATTCCCATCACCAAAGCCGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGATGGCATACCATTGCGAACACCACGATGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCGAATCCCAGATATGGTGGTGAGTCGGGTGGCTTCGAATGGAGTAGATAGTTTCTACTTTTCCTTAGGCTGAAGATGATGATTGTAGTTTATTTCAGTTATCCTGATCTTTCACTAGTTATGATAGTTTAGTCGCTTTTTTTTTTTTTTTTTATCTATGGGTCTACATTTTCCTAATATATCTCTAAACCCAAATATTTTAATATTATATATGTTTTTTGTA

Coding sequence (CDS)

ATGCTGCGTCTTCAATGGCTGTCTTCTTCCTTGCTTCCGCCATTAAACCCCCCCGAGCTCTGCGCACAACCCTGTAAGAACCCCAGACGATGCGGTTTCAACTCCTCTCGCCAACTCTTCACTCTCACCGCTACACGAAAACCTTCTCCAAAATGCCAGTACGCGTCCTGGAACACGCAGCAGCCTGCCTTCGAACCAGCCTCTCAGACCGATTCATTTTCGCCACAAACAAGCGCCGGCGCTGCCGCGGCTTTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGAAAGGCTGCCCTGTCCATCGAGCCTAGGCCACCAGAGTTTACACCTATAGATTCGGGGGCGTTCAAAGTATCCAGGCAAGGATTTGTAATGCTTCAGCTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTTTCATTATCACTGACAGAATTGGGAAGTTTAGTCGCCCTTGGCCCACGGGAGTCTTGCGAATTTTTCCATGATCCCTACAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTCGAGCCTCTTCCAGATGGTTCTGGACATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTAGATGAGAGCATTTATATTCCCATCACCAAAGCCGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGATGGCATACCATTGCGAACACCACGATGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCGAATCCCAGATATGGTGGTGAGTCGGGTGGCTTCGAATGGAGTAGATAG

Protein sequence

MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR

Homology

[Close]

BLAST of CmoCh12G006480 vs. ExPASy Swiss-Prot
Match: Q9M9S3 (Single-stranded DNA-binding protein WHY1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WHY1 PE=1 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 5.5e-86
Identity = 158/244 (64.75%), Postives = 191/244 (78.28%), Query Frame = 0


Query: 32  GFNSSRQLFTLTATRKPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFV 91
           GF   R  F L  T K        S  T    FE     DS S   S   A  LP RF+V
Sbjct: 29  GFAVKRHGFALKPTTKTVKLFSVKSRQTDY--FEKQRFGDSSS---SPSPAEGLPARFYV 88

Query: 92  GHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLS 151
           GHSIYKGKAAL+++PR PEF  +DSGAFK+S+ GF++LQ AP+AGVRQYDWS+KQVFSLS
Sbjct: 89  GHSIYKGKAALTVDPRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYDWSKKQVFSLS 148

Query: 152 LTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINV 211
           +TE+G+LV+LGPRESCEFFHDP+KGKSDEGKVRK+LKVEPLPDGSGHFFNLSVQNKL+NV
Sbjct: 149 VTEIGTLVSLGPRESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNV 208

Query: 212 DESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGF 271
           DESIYIPIT+AE+ VL+ AF F+LP+L+GWH  AN +++PE++SRVNNA+P YGG+   +
Sbjct: 209 DESIYIPITRAEFAVLISAFNFVLPYLIGWHAFAN-SIKPEETSRVNNASPNYGGD---Y 263

Query: 272 EWSR 276
           EW+R
Sbjct: 269 EWNR 263

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BLAST of CmoCh12G006480 vs. ExPASy Swiss-Prot
Match: Q66GR6 (Single-stranded DNA-binding protein WHY3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WHY3 PE=1 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 3.9e-84
Identity = 153/230 (66.52%), Postives = 188/230 (81.74%), Query Frame = 0


Query: 47  KPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEP 106
           KP+ + +    + Q   FE     DS S Q     A    PRF+VGHSIYKGKAAL+IEP
Sbjct: 47  KPTARLKLTVKSRQSDYFEKQRFGDSSSSQN----AEVSSPRFYVGHSIYKGKAALTIEP 106

Query: 107 RPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRES 166
           R PEF  ++SGAFK++++GF++LQ APAAGVRQYDWSRKQVFSLS+TE+G+LV+LGPRES
Sbjct: 107 RAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRES 166

Query: 167 CEFFHDPYKGK-SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYT 226
           CEFFHDP+KGK SDEGKVRK+LKVEPLPDGSG FFNLSVQNKL+NVDES+YIPITKAE+ 
Sbjct: 167 CEFFHDPFKGKGSDEGKVRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFA 226

Query: 227 VLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           VL+ AF F+LPHL+GW   AN +++PEDS+R+NNA+P+YGG+   +EWSR
Sbjct: 227 VLISAFNFVLPHLIGWSAFAN-SIKPEDSNRLNNASPKYGGD---YEWSR 268

[Close]

BLAST of CmoCh12G006480 vs. ExPASy Swiss-Prot
Match: Q9LL85 (Single-stranded DNA-binding protein WHY1, chloroplastic OS=Solanum tuberosum OX=4113 GN=WHY1 PE=1 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 4.8e-82
Identity = 145/212 (68.40%), Postives = 175/212 (82.55%), Query Frame = 0


Query: 64  FEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSR 123
           FEP  Q      Q       A  P+ FVG+SIYKGKAAL++EPR PEF+P+DSGAFK+SR
Sbjct: 71  FEPQQQQQQQQQQPQ----GASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSR 130

Query: 124 QGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKV 183
           +G VMLQ APAAGVRQYDWSRKQVFSLS+TE+GS+++LG ++SCEFFHDP KG+SDEG+V
Sbjct: 131 EGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSDEGRV 190

Query: 184 RKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHT 243
           RK+LKVEPLPDGSGHFFNLSVQNKLIN+DE+IYIP+TKAE+ VLV AF F++P+L+GWHT
Sbjct: 191 RKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGWHT 250

Query: 244 IANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
             N + +PED+SR NNANPR G E    EW+R
Sbjct: 251 AVN-SFKPEDASRSNNANPRSGAE---LEWNR 274

[Close]

BLAST of CmoCh12G006480 vs. ExPASy Swiss-Prot
Match: B2LXS7 (Single-stranded DNA-binding protein WHY1, chloroplastic OS=Zea mays OX=4577 GN=WHY1 PE=2 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.6e-67
Identity = 116/188 (61.70%), Postives = 149/188 (79.26%), Query Frame = 0


Query: 88  RFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQV 147
           R F  +SIYKGKAALS +PRPP F P+DSGA+KV+++GFV+LQ APA   RQYDW+RKQV
Sbjct: 85  RVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQV 144

Query: 148 FSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNK 207
           FSLS+ E+G+L+ LGP +SCEFFHDP+KG+S+EGKVRK+LK+EP PDG+G FFNLSVQN+
Sbjct: 145 FSLSVWEIGTLLTLGPTDSCEFFHDPFKGRSEEGKVRKVLKIEPTPDGNGRFFNLSVQNR 204

Query: 208 LINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGE 267
           LINVDESIYIPITK E+ V+V  F +I+PHLMGW T   ++++PE+S   +         
Sbjct: 205 LINVDESIYIPITKGEFAVIVSTFNYIIPHLMGWSTFV-SSIKPEESRPYSRPQ-----S 264

Query: 268 SGGFEWSR 276
           +  +EW R
Sbjct: 265 TSEYEWRR 266

[Close]

BLAST of CmoCh12G006480 vs. ExPASy Swiss-Prot
Match: Q8VYF7 (Single-stranded DNA-binding protein WHY2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WHY2 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.8e-44
Identity = 88/180 (48.89%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 67  ASQTDSFSP-QTSAGAAAALPP-RFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQ 126
           AS ++S +P +   G  AA P  R F  +SI+KGKAALS+EP  P FT IDSG  ++ R+
Sbjct: 30  ASWSNSSTPGRGFPGKDAAKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRR 89

Query: 127 GFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKVR 186
           G +M+   PA G R+YDW +KQ F+LS TE+GSL+++G ++S EFFHDP    S+ G+VR
Sbjct: 90  GSLMMTFMPAIGERKYDWEKKQKFALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVR 149

Query: 187 KILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTI 245
           K L V+P  DGSG+F +LSV N ++  ++   +P+TKAE+ V+  AF F LPH+MGW+ +
Sbjct: 150 KSLSVKPHADGSGYFISLSVNNSILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGWNRL 209

[Close]

BLAST of CmoCh12G006480 vs. ExPASy TrEMBL
Match: A0A6J1GJ86 (single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111454358 PE=3 SV=1)

HSP 1 Score: 566.6 bits (1459), Expect = 5.6e-158
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0


Query: 1   MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNTQ 60
           MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNTQ
Sbjct: 1   MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNTQ 60

Query: 61  QPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFK 120
           QPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFK
Sbjct: 61  QPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFK 120

Query: 121 VSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDE 180
           VSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDE
Sbjct: 121 VSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDE 180

Query: 181 GKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMG 240
           GKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMG
Sbjct: 181 GKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMG 240

Query: 241 WHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           WHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR
Sbjct: 241 WHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 275

[Close]

BLAST of CmoCh12G006480 vs. ExPASy TrEMBL
Match: A0A6J1KPI3 (single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111496070 PE=3 SV=1)

HSP 1 Score: 548.5 bits (1412), Expect = 1.6e-152
Identity = 269/275 (97.82%), Postives = 270/275 (98.18%), Query Frame = 0


Query: 1   MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNTQ 60
           MLRLQWLSSSLLPPLN PELCAQPCKNPRRC FNSSRQLFTLTATRKPSPKCQYASWNTQ
Sbjct: 1   MLRLQWLSSSLLPPLN-PELCAQPCKNPRRCRFNSSRQLFTLTATRKPSPKCQYASWNTQ 60

Query: 61  QPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFK 120
           QPAFEPASQTDS+SPQT AGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFK
Sbjct: 61  QPAFEPASQTDSYSPQTRAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFK 120

Query: 121 VSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDE 180
           VSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDE
Sbjct: 121 VSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDE 180

Query: 181 GKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMG 240
           GKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMG
Sbjct: 181 GKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMG 240

Query: 241 WHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           WHTIANT MRPEDSSRVNNANPRYGGESG FEWSR
Sbjct: 241 WHTIANTMMRPEDSSRVNNANPRYGGESGDFEWSR 274

[Close]

BLAST of CmoCh12G006480 vs. ExPASy TrEMBL
Match: A0A5D3BP35 (Single-stranded DNA-binding protein WHY1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00810 PE=3 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.7e-128
Identity = 233/278 (83.81%), Postives = 247/278 (88.85%), Query Frame = 0


Query: 1   MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNT- 60
           MLRLQWLSSSLLP  N PEL  +   NPR C  N  R L TLT TRKPSPKCQY SWNT 
Sbjct: 1   MLRLQWLSSSLLPTFN-PELSPETLSNPRLCSLNFRRPLLTLTTTRKPSPKCQY-SWNTH 60

Query: 61  --QQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSG 120
             QQ +FEPASQTDSFSPQ+ AGAAAALPPRFFVGHSIYKGKAAL++EPRPPEFTP+DSG
Sbjct: 61  QHQQSSFEPASQTDSFSPQSRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSG 120

Query: 121 AFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGK 180
           AFK+SR+G VMLQ APAAGVRQYDWSRKQVFSLS+TELGSL+ALGPRE+CEFFHDPYKGK
Sbjct: 121 AFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKGK 180

Query: 181 SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPH 240
           SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPH
Sbjct: 181 SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPH 240

Query: 241 LMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           LMGWHTIANT  +PEDSSR N ANPRYGG+   FEW+R
Sbjct: 241 LMGWHTIANTMTKPEDSSRGNTANPRYGGD---FEWNR 273

[Close]

BLAST of CmoCh12G006480 vs. ExPASy TrEMBL
Match: A0A1S3C3B0 (single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103496412 PE=3 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.7e-128
Identity = 233/278 (83.81%), Postives = 247/278 (88.85%), Query Frame = 0


Query: 1   MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNT- 60
           MLRLQWLSSSLLP  N PEL  +   NPR C  N  R L TLT TRKPSPKCQY SWNT 
Sbjct: 1   MLRLQWLSSSLLPTFN-PELSPETLSNPRLCSLNFRRPLLTLTTTRKPSPKCQY-SWNTH 60

Query: 61  --QQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSG 120
             QQ +FEPASQTDSFSPQ+ AGAAAALPPRFFVGHSIYKGKAAL++EPRPPEFTP+DSG
Sbjct: 61  QHQQSSFEPASQTDSFSPQSRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSG 120

Query: 121 AFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGK 180
           AFK+SR+G VMLQ APAAGVRQYDWSRKQVFSLS+TELGSL+ALGPRE+CEFFHDPYKGK
Sbjct: 121 AFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKGK 180

Query: 181 SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPH 240
           SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPH
Sbjct: 181 SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPH 240

Query: 241 LMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           LMGWHTIANT  +PEDSSR N ANPRYGG+   FEW+R
Sbjct: 241 LMGWHTIANTMTKPEDSSRGNTANPRYGGD---FEWNR 273

[Close]

BLAST of CmoCh12G006480 vs. ExPASy TrEMBL
Match: A0A6J1DD66 (single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111019296 PE=3 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 1.8e-124
Identity = 229/281 (81.49%), Postives = 244/281 (86.83%), Query Frame = 0


Query: 1   MLRLQWLSSSLLPPLNPPELCAQP---CKNPRRCGFNSSRQLFTLTATRKPSPKCQYASW 60
           MLRLQWLSSSLLPPL  PEL  +    C N R C  NSSR L TLTATRKPSPKCQY SW
Sbjct: 1   MLRLQWLSSSLLPPLLNPELSPETSHLCPNRRLCTLNSSRPLLTLTATRKPSPKCQY-SW 60

Query: 61  NTQQ---PAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPI 120
           +TQQ   P  EP SQ  SFSPQT AGAA ALPPRFFVGHSIYKGKA L++EPRPPEFTP+
Sbjct: 61  STQQQQPPPSEPGSQAHSFSPQTRAGAAGALPPRFFVGHSIYKGKAVLTVEPRPPEFTPL 120

Query: 121 DSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPY 180
           DSGAFK+SR+GFV+LQ APAAGVRQYDWSRKQVFSLS+TELGSL+ALG R+SCEFFHDPY
Sbjct: 121 DSGAFKLSREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGLRDSCEFFHDPY 180

Query: 181 KGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFI 240
           KGKS+EGKVRKILKVEPLPDGSGHFFNLSVQNKLIN+DESIYIPITKAEYTVLVEAFKFI
Sbjct: 181 KGKSEEGKVRKILKVEPLPDGSGHFFNLSVQNKLINMDESIYIPITKAEYTVLVEAFKFI 240

Query: 241 LPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           LPHLMGWH I+NT  R EDS RVNNANPRYGG+   FEWSR
Sbjct: 241 LPHLMGWHMISNTMTRAEDSGRVNNANPRYGGD---FEWSR 277

[Close]

BLAST of CmoCh12G006480 vs. TAIR 10
Match: AT1G14410.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 318.9 bits (816), Expect = 3.9e-87
Identity = 158/244 (64.75%), Postives = 191/244 (78.28%), Query Frame = 0


Query: 32  GFNSSRQLFTLTATRKPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFV 91
           GF   R  F L  T K        S  T    FE     DS S   S   A  LP RF+V
Sbjct: 29  GFAVKRHGFALKPTTKTVKLFSVKSRQTDY--FEKQRFGDSSS---SPSPAEGLPARFYV 88

Query: 92  GHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLS 151
           GHSIYKGKAAL+++PR PEF  +DSGAFK+S+ GF++LQ AP+AGVRQYDWS+KQVFSLS
Sbjct: 89  GHSIYKGKAALTVDPRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYDWSKKQVFSLS 148

Query: 152 LTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINV 211
           +TE+G+LV+LGPRESCEFFHDP+KGKSDEGKVRK+LKVEPLPDGSGHFFNLSVQNKL+NV
Sbjct: 149 VTEIGTLVSLGPRESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNV 208

Query: 212 DESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGF 271
           DESIYIPIT+AE+ VL+ AF F+LP+L+GWH  AN +++PE++SRVNNA+P YGG+   +
Sbjct: 209 DESIYIPITRAEFAVLISAFNFVLPYLIGWHAFAN-SIKPEETSRVNNASPNYGGD---Y 263

Query: 272 EWSR 276
           EW+R
Sbjct: 269 EWNR 263

[Close]

BLAST of CmoCh12G006480 vs. TAIR 10
Match: AT2G02740.2 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 315.8 bits (808), Expect = 3.3e-86
Identity = 152/229 (66.38%), Postives = 187/229 (81.66%), Query Frame = 0


Query: 47  KPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEP 106
           KP+ + +    + Q   FE     DS S Q     A    PRF+VGHSIYKGKAAL+IEP
Sbjct: 47  KPTARLKLTVKSRQSDYFEKQRFGDSSSSQN----AEVSSPRFYVGHSIYKGKAALTIEP 106

Query: 107 RPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRES 166
           R PEF  ++SGAFK++++GF++LQ APAAGVRQYDWSRKQVFSLS+TE+G+LV+LGPRES
Sbjct: 107 RAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRES 166

Query: 167 CEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTV 226
           CEFFHDP+KGK DEGKVRK+LKVEPLPDGSG FFNLSVQNKL+NVDES+YIPITKAE+ V
Sbjct: 167 CEFFHDPFKGKGDEGKVRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFAV 226

Query: 227 LVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           L+ AF F+LPHL+GW   AN +++PEDS+R+NNA+P+YGG+   +EWSR
Sbjct: 227 LISAFNFVLPHLIGWSAFAN-SIKPEDSNRLNNASPKYGGD---YEWSR 267

[Close]

BLAST of CmoCh12G006480 vs. TAIR 10
Match: AT2G02740.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 312.8 bits (800), Expect = 2.8e-85
Identity = 153/230 (66.52%), Postives = 188/230 (81.74%), Query Frame = 0


Query: 47  KPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEP 106
           KP+ + +    + Q   FE     DS S Q     A    PRF+VGHSIYKGKAAL+IEP
Sbjct: 47  KPTARLKLTVKSRQSDYFEKQRFGDSSSSQN----AEVSSPRFYVGHSIYKGKAALTIEP 106

Query: 107 RPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRES 166
           R PEF  ++SGAFK++++GF++LQ APAAGVRQYDWSRKQVFSLS+TE+G+LV+LGPRES
Sbjct: 107 RAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRES 166

Query: 167 CEFFHDPYKGK-SDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYT 226
           CEFFHDP+KGK SDEGKVRK+LKVEPLPDGSG FFNLSVQNKL+NVDES+YIPITKAE+ 
Sbjct: 167 CEFFHDPFKGKGSDEGKVRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFA 226

Query: 227 VLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 276
           VL+ AF F+LPHL+GW   AN +++PEDS+R+NNA+P+YGG+   +EWSR
Sbjct: 227 VLISAFNFVLPHLIGWSAFAN-SIKPEDSNRLNNASPKYGGD---YEWSR 268

[Close]

BLAST of CmoCh12G006480 vs. TAIR 10
Match: AT1G71260.1 (WHIRLY 2 )

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-45
Identity = 88/180 (48.89%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 67  ASQTDSFSP-QTSAGAAAALPP-RFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQ 126
           AS ++S +P +   G  AA P  R F  +SI+KGKAALS+EP  P FT IDSG  ++ R+
Sbjct: 30  ASWSNSSTPGRGFPGKDAAKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRR 89

Query: 127 GFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKVR 186
           G +M+   PA G R+YDW +KQ F+LS TE+GSL+++G ++S EFFHDP    S+ G+VR
Sbjct: 90  GSLMMTFMPAIGERKYDWEKKQKFALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVR 149

Query: 187 KILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTI 245
           K L V+P  DGSG+F +LSV N ++  ++   +P+TKAE+ V+  AF F LPH+MGW+ +
Sbjct: 150 KSLSVKPHADGSGYFISLSVNNSILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGWNRL 209

The following BLAST results are available for this feature:

BLAST of CmoCh12G006480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9S3	5.5e-86	64.75	Single-stranded DNA-binding protein WHY1, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q66GR6	3.9e-84	66.52	Single-stranded DNA-binding protein WHY3, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q9LL85	4.8e-82	68.40	Single-stranded DNA-binding protein WHY1, chloroplastic OS=Solanum tuberosum OX=...	[more]
B2LXS7	2.6e-67	61.70	Single-stranded DNA-binding protein WHY1, chloroplastic OS=Zea mays OX=4577 GN=W...	[more]
Q8VYF7	1.8e-44	48.89	Single-stranded DNA-binding protein WHY2, mitochondrial OS=Arabidopsis thaliana ...	[more]

BLAST of CmoCh12G006480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJ86	5.6e-158	100.00	single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A6J1KPI3	1.6e-152	97.82	single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A5D3BP35	2.7e-128	83.81	Single-stranded DNA-binding protein WHY1 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3C3B0	2.7e-128	83.81	single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucumis melo OX=...	[more]
A0A6J1DD66	1.8e-124	81.49	single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Momordica charan...	[more]

BLAST of CmoCh12G006480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14410.1	3.9e-87	64.75	ssDNA-binding transcriptional regulator	[more]
AT2G02740.2	3.3e-86	66.38	ssDNA-binding transcriptional regulator	[more]
AT2G02740.1	2.8e-85	66.52	ssDNA-binding transcriptional regulator	[more]
AT1G71260.1	1.3e-45	48.89	WHIRLY 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013742	Whirly transcription factor	PFAM	PF08536	Whirly	coord: 95..229 e-value: 2.3E-59 score: 199.1
IPR013742	Whirly transcription factor	PANTHER	PTHR31745	SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL	coord: 68..275
IPR009044	ssDNA-binding transcriptional regulator	GENE3D	2.30.31.10	Transcriptional Coactivator Pc4; Chain A	coord: 80..254 e-value: 9.0E-76 score: 255.4
IPR009044	ssDNA-binding transcriptional regulator	SUPERFAMILY	54447	ssDNA-binding transcriptional regulator domain	coord: 87..267
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..275
None	No IPR available	PANTHER	PTHR31745:SF3	SINGLE-STRANDED DNA-BINDING PROTEIN WHY3, CHLOROPLASTIC	coord: 68..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G006480.1	CmoCh12G006480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003677	DNA binding