Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTCAGCCGATTGCTAAGCTCTGGGACGCCTCGTAATGTAGGCGACTACTTTACCATGATATATGTCTATGAGCTGATCCTGTTTTCGTGCTATGAATTGATTATTGCTGTTACGTTCAATATGTAGCGATTTGATTTGTTCTTTCAACTTTTGTTACTCTACAGTCAACAAAGAGTATTTGATGTTCAAGTGTTCGAATTGCATAGACTTATCAAGGTAAAGTGATCTAATTTCTTCAAATAGCAGCTTTTGTGATCGAATTGTTCACACTCTCTAAACTTGTCTATGCAAACAGGTCCAACGCTTAATTGCTGGATCACCTCATCTTTTATTTGAAGATGGGATTTTTCTGGACAATTCTCCTCCAAGTCGTCTTCCTACGAAGAAACTTAGCTCAGATTACGCCATCAAATCGCACGTCGAGCTTAAGCACAATGATGACCCGAAGAAGCCAAAACACAATGTGGAATGTTCAGCAGAGAACGCTGTTGGGAAGACTTCTCTTTCTCCTGCACCGGTTGCACCGGTCTGTTGTCAGCCTTCAACGAACGGGCCTTACAAAGTAAATCGACAGCCAACGTCTGTTTCCGCTGATAATAAATTAAGCAGTTGGTACCAGCCATCTGCAGCACATCAGTGGCTGGTCCCGGTATTGTCTCCTTCTGAAGGACTCGTATATAAGCCTTACCCTGCGCCCGGATTCATGTATGGAGGATGTGCACCTTATGGTCCGATGACTCCAATCATGAATCCGTCCTACGGATTTCCAGCTTCTGCTCATCATGGAATTGGGGCGCTTCCTAGTACTCCCATGGTTGGTGGTACTTACTTCCACCCTTATGGCATGCCGGTGATGAATCCTGGTATGTCGGGTTTGCCCCTCGATCAAGTTAACTGGTATACGGGAGATCAGAATCAGTTATCGGGAGGTGTGGCTGCTTACTATATGCAGCATCAAACATCATATGATGTTTCAACACAGAGAGACAGAGATGAAAATCAAGAAACTGTTTCACTAACTGCAAAGTCTCAAGCACCAAAAAGCAATGAGCTACAAGCAAGTACTGCAAGTAGTCCTCCTGGAAAACTGCAAGGAAACGAAGCGAATCGAACCGCTGAAAGCCACGACGTGCTTCCACTTTTCCCTATAGCTCAGCCACTTACAGAGGAAGGCCCTCAACCTTCAGACTCCGACCAAACGAAACGGGTGATTCGAGTCGTGCCACACAATCGGAGATCGGCGAACGAATCAGCTGCTCGTATTTTCCAATCGATTCAAAATGAGAGAAAACAGTATGACTCAATTTAGCCAGTTCTTGTCCCCTCCTTTTTGCTCTCTGTTACCTTAATTTTCTTTGAATTGTCTCACTATGTTGCTTTTTTGGTTCATTTTACAAAACCTCAGCACAGTTTAGTTTATTCATATGTGTATATATATATCTGGAGATTTACATGTCAATGCACTGGGAAACATGAGTGAGGTATCTATGAATGTTGATTTCAAACCCAGTTGTTCATTTCATGTGTGATTATTA
mRNA sequence
ATGTCGGTTCAGCCGATTGCTAAGCTCTGGGACGCCTCTCAACAAAGAGTATTTGATGTTCAAGTGTTCGAATTGCATAGACTTATCAAGGTCCAACGCTTAATTGCTGGATCACCTCATCTTTTATTTGAAGATGGGATTTTTCTGGACAATTCTCCTCCAAGTCGTCTTCCTACGAAGAAACTTAGCTCAGATTACGCCATCAAATCGCACGTCGAGCTTAAGCACAATGATGACCCGAAGAAGCCAAAACACAATGTGGAATGTTCAGCAGAGAACGCTGTTGGGAAGACTTCTCTTTCTCCTGCACCGGTTGCACCGGTCTGTTGTCAGCCTTCAACGAACGGGCCTTACAAAGTAAATCGACAGCCAACGTCTGTTTCCGCTGATAATAAATTAAGCAGTTGGTACCAGCCATCTGCAGCACATCAGTGGCTGGTCCCGGTATTGTCTCCTTCTGAAGGACTCGTATATAAGCCTTACCCTGCGCCCGGATTCATGTATGGAGGATGTGCACCTTATGGTCCGATGACTCCAATCATGAATCCGTCCTACGGATTTCCAGCTTCTGCTCATCATGGAATTGGGGCGCTTCCTAGTACTCCCATGGTTGGTGGTACTTACTTCCACCCTTATGGCATGCCGGTGATGAATCCTGGTATGTCGGGTTTGCCCCTCGATCAAGTTAACTGGTATACGGGAGATCAGAATCAGTTATCGGGAGGTGTGGCTGCTTACTATATGCAGCATCAAACATCATATGATGTTTCAACACAGAGAGACAGAGATGAAAATCAAGAAACTGTTTCACTAACTGCAAAGTCTCAAGCACCAAAAAGCAATGAGCTACAAGCAAGTACTGCAAGTAGTCCTCCTGGAAAACTGCAAGGAAACGAAGCGAATCGAACCGCTGAAAGCCACGACGTGCTTCCACTTTTCCCTATAGCTCAGCCACTTACAGAGGAAGGCCCTCAACCTTCAGACTCCGACCAAACGAAACGGGTGATTCGAGTCGTGCCACACAATCGGAGATCGGCGAACGAATCAGCTGCTCGTATTTTCCAATCGATTCAAAATGAGAGAAAACAGTATGACTCAATTTAGCCAGTTCTTGTCCCCTCCTTTTTGCTCTCTGTTACCTTAATTTTCTTTGAATTGTCTCACTATGTTGCTTTTTTGGTTCATTTTACAAAACCTCAGCACAGTTTAGTTTATTCATATGTGTATATATATATCTGGAGATTTACATGTCAATGCACTGGGAAACATGAGTGAGGTATCTATGAATGTTGATTTCAAACCCAGTTGTTCATTTCATGTGTGATTATTA
Coding sequence (CDS)
ATGTCGGTTCAGCCGATTGCTAAGCTCTGGGACGCCTCTCAACAAAGAGTATTTGATGTTCAAGTGTTCGAATTGCATAGACTTATCAAGGTCCAACGCTTAATTGCTGGATCACCTCATCTTTTATTTGAAGATGGGATTTTTCTGGACAATTCTCCTCCAAGTCGTCTTCCTACGAAGAAACTTAGCTCAGATTACGCCATCAAATCGCACGTCGAGCTTAAGCACAATGATGACCCGAAGAAGCCAAAACACAATGTGGAATGTTCAGCAGAGAACGCTGTTGGGAAGACTTCTCTTTCTCCTGCACCGGTTGCACCGGTCTGTTGTCAGCCTTCAACGAACGGGCCTTACAAAGTAAATCGACAGCCAACGTCTGTTTCCGCTGATAATAAATTAAGCAGTTGGTACCAGCCATCTGCAGCACATCAGTGGCTGGTCCCGGTATTGTCTCCTTCTGAAGGACTCGTATATAAGCCTTACCCTGCGCCCGGATTCATGTATGGAGGATGTGCACCTTATGGTCCGATGACTCCAATCATGAATCCGTCCTACGGATTTCCAGCTTCTGCTCATCATGGAATTGGGGCGCTTCCTAGTACTCCCATGGTTGGTGGTACTTACTTCCACCCTTATGGCATGCCGGTGATGAATCCTGGTATGTCGGGTTTGCCCCTCGATCAAGTTAACTGGTATACGGGAGATCAGAATCAGTTATCGGGAGGTGTGGCTGCTTACTATATGCAGCATCAAACATCATATGATGTTTCAACACAGAGAGACAGAGATGAAAATCAAGAAACTGTTTCACTAACTGCAAAGTCTCAAGCACCAAAAAGCAATGAGCTACAAGCAAGTACTGCAAGTAGTCCTCCTGGAAAACTGCAAGGAAACGAAGCGAATCGAACCGCTGAAAGCCACGACGTGCTTCCACTTTTCCCTATAGCTCAGCCACTTACAGAGGAAGGCCCTCAACCTTCAGACTCCGACCAAACGAAACGGGTGATTCGAGTCGTGCCACACAATCGGAGATCGGCGAACGAATCAGCTGCTCGTATTTTCCAATCGATTCAAAATGAGAGAAAACAGTATGACTCAATTTAG
Protein sequence
MSVQPIAKLWDASQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHVELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNKLSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAHHGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQTSYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPLFPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI
Homology
BLAST of CmoCh12G005650 vs. ExPASy Swiss-Prot
Match:
Q9SNQ6 (Protein HEADING DATE 3B OS=Oryza sativa subsp. japonica OX=39947 GN=HD3B PE=2 SV=1)
HSP 1 Score: 151.0 bits (380), Expect = 2.6e-35
Identity = 138/380 (36.32%), Postives = 183/380 (48.16%), Query Frame = 0
Query: 13 SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 72
+QQRVF VQVFELH+L+KVQ+LIA SPH+L E L N + L +K + +K+
Sbjct: 416 NQQRVFAVQVFELHKLVKVQKLIAASPHVLIESDPCLGN---ALLGSKNKLVEENLKAQP 475
Query: 73 ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCC--------QPSTNGPYKVNRQP 132
L D +P + V K + +P +P Q +TNG K NR+
Sbjct: 476 LLVATIDDVEPS-----LQQPEVSKENTEDSPPSPHDTGLGSGQRDQAATNGVSKSNRRA 535
Query: 133 TSVSADNKLSSW---YQPSAAHQWLVPVLSPSEGLVYKPYPAP--------GFMYGGCAP 192
T V++DNK ++W QP +QWLVPV+SP EGLVYKPY P Y C P
Sbjct: 536 TPVASDNKQNNWGVQLQP-PQNQWLVPVMSPLEGLVYKPYSGPCPPAGSILAPFYANCTP 595
Query: 193 YG-PMT--PIMNPSYGFP---ASAHHGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLD 252
P T MN +YG P H G PS PM YF P+ +PVMNP ++
Sbjct: 596 LSLPSTAGDFMNSAYGVPMPHQPQHMGAPGPPSMPM---NYFPPFSIPVMNPTAPAPVVE 655
Query: 253 QVNWYTGDQNQLSGGVAAYYMQHQTSYDVSTQRDRDENQETVSLTAKSQAPKSNELQAST 312
Q G + + Q S ++S S + A + +E QAS+
Sbjct: 656 Q-----GRHPSMPQPYGNFEQQSWISCNMSHP----------SGIWRFHASRDSEAQASS 715
Query: 313 ASSPPGKLQGNEANRTAESHDVLPLFPIAQPLTEEGPQPSDS--DQTKRVIRVVPHNRRS 366
ASSP + Q + FP + PQPS S D VI+VVPHN R+
Sbjct: 716 ASSPFDRFQ-------CSGSGPVSAFPTVSAQNNQ-PQPSYSSRDNQTNVIKVVPHNSRT 760
BLAST of CmoCh12G005650 vs. ExPASy Swiss-Prot
Match:
O82804 (Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana OX=3702 GN=ELF3 PE=1 SV=1)
HSP 1 Score: 148.3 bits (373), Expect = 1.7e-34
Identity = 140/385 (36.36%), Postives = 183/385 (47.53%), Query Frame = 0
Query: 12 ASQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKK-LSSDYAIK- 71
A+QQRVF VQ+FELHRLIKVQ+LIA SP LL ++ FL P KK L S++ +K
Sbjct: 338 ANQQRVFAVQLFELHRLIKVQKLIAASPDLLLDEISFLGKVSAKSYPVKKLLPSEFLVKP 397
Query: 72 --SHVELKHNDDPKK-PKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTS 131
HV +K D +K +H +E SAEN VG+ S Q S P+ N P +
Sbjct: 398 PLPHVVVKQRGDSEKTDQHKMESSAENVVGRLSNQGHH------QQSNYMPFANN--PPA 457
Query: 132 VSADNKLSSWYQPSAA---HQWLVPVLSPSEGLVYKPYPAPGFM--YGGCAPYGPMTPIM 191
A N QP + QWL+PV+SPSEGL+YKP+P YGG + TP++
Sbjct: 458 SPAPNGYCFPPQPPPSGNHQQWLIPVMSPSEGLIYKPHPGMAHTGHYGGYYGHYMPTPMV 517
Query: 192 NPSYGFPASAHHGIGALPSTPMVGGTYFHPYGM--PVMNPGMSG------LPLDQVNWYT 251
P Y H G+G P G YF PYGM +MNP S P +Q+N +
Sbjct: 518 MPQY------HPGMG----FPPPGNGYFPPYGMMPTIMNPYCSSQQQQQQQPNEQMNQF- 577
Query: 252 GDQNQLSGGVAAYYMQHQTSYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPG 311
G L Q + + D + + KS Q ST SSP G
Sbjct: 578 GHPGNL-----------QNTQQQQQRSDNEPAPQQQQQPTKSYPRARKSRQGSTGSSPSG 637
Query: 312 K--LQGNEANRTAESHDVLPLFPIAQPLTEEGPQPS----------DSDQTKRVIRVVPH 367
+ G+++ R + D A T + D RVI+VVPH
Sbjct: 638 PQGISGSKSFRPFAAVDEDSNINNAPEQTMTTTTTTTRTTVTQTTRDGGGVTRVIKVVPH 692
BLAST of CmoCh12G005650 vs. ExPASy Swiss-Prot
Match:
Q657D6 (ELF3-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ELF3-2 PE=2 SV=2)
HSP 1 Score: 147.5 bits (371), Expect = 2.9e-34
Identity = 136/375 (36.27%), Postives = 184/375 (49.07%), Query Frame = 0
Query: 13 SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSH- 72
+QQRVF QVFELH+L+KVQ+LIA SPH+L E L N + L +KK ++ +K+
Sbjct: 396 NQQRVFAAQVFELHKLVKVQKLIAASPHVLIEGDPCLGN---ALLASKKKMAEENLKAQP 455
Query: 73 VELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVC---CQPSTNGPYKVNRQPTSVS 132
V + NDD + E S EN+ + SP APV Q + G K N + T V+
Sbjct: 456 VLVATNDDVQPSLQEPELSKENS-EENPPSPRDTAPVSGHHDQTAKIGASKSNLRATPVA 515
Query: 133 ADNKLSS---WYQPSAAHQWLVPVLSPSEGLVYKPYPAP--------GFMYGGCAPYG-P 192
+DN+ ++ QP +QWL+PV+SPSEGLVYKPY P Y C P P
Sbjct: 516 SDNRQNNCGVQLQP-PQNQWLIPVMSPSEGLVYKPYSGPCPPAGSILAPFYANCTPLRLP 575
Query: 193 MT--PIMNPSYGFPASAHHGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTG 252
T MN +YG P P TP + YF P+ +PVMNP ++Q
Sbjct: 576 STTGDFMNSAYGVPIPHQPQHMGAPGTPTMPMNYFPPFSVPVMNPVALASAVEQ------ 635
Query: 253 DQNQLSGGVAAYYMQHQTSYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGK 312
+ Q ++ N S + A + +E QAS+ASSP +
Sbjct: 636 ---------GRHPSMPQPYGNLEQHSRMSCNMSHPSGIWRFHASRDSEAQASSASSPFDR 695
Query: 313 LQGNEANRTAESHDVLPLFPIAQPLTEEGPQPSDS--DQTKRVIRVVPHNR-RSANESAA 367
LQ + + FP A + PQPS D VIRV+PHN ++A+ESAA
Sbjct: 696 LQCGGSGPVS-------AFPTASAQNTQ-PQPSSGSRDNQTNVIRVIPHNNSQTASESAA 742
BLAST of CmoCh12G005650 vs. ExPASy TrEMBL
Match:
A0A6J1GHR3 (protein EARLY FLOWERING 3-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111454283 PE=4 SV=1)
HSP 1 Score: 715.7 bits (1846), Expect = 1.0e-202
Identity = 354/355 (99.72%), Postives = 355/355 (100.00%), Query Frame = 0
Query: 13 SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 72
+QQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV
Sbjct: 352 NQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 411
Query: 73 ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 132
ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK
Sbjct: 412 ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 471
Query: 133 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 192
LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH
Sbjct: 472 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 531
Query: 193 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 252
HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT
Sbjct: 532 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 591
Query: 253 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 312
SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL
Sbjct: 592 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 651
Query: 313 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 368
FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI
Sbjct: 652 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 706
BLAST of CmoCh12G005650 vs. ExPASy TrEMBL
Match:
A0A6J1GIW1 (protein EARLY FLOWERING 3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454283 PE=4 SV=1)
HSP 1 Score: 715.7 bits (1846), Expect = 1.0e-202
Identity = 354/355 (99.72%), Postives = 355/355 (100.00%), Query Frame = 0
Query: 13 SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 72
+QQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV
Sbjct: 387 NQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 446
Query: 73 ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 132
ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK
Sbjct: 447 ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 506
Query: 133 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 192
LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH
Sbjct: 507 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 566
Query: 193 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 252
HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT
Sbjct: 567 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 626
Query: 253 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 312
SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL
Sbjct: 627 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 686
Query: 313 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 368
FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI
Sbjct: 687 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 741
BLAST of CmoCh12G005650 vs. ExPASy TrEMBL
Match:
A0A6J1GIU5 (protein EARLY FLOWERING 3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454283 PE=4 SV=1)
HSP 1 Score: 715.7 bits (1846), Expect = 1.0e-202
Identity = 354/355 (99.72%), Postives = 355/355 (100.00%), Query Frame = 0
Query: 13 SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 72
+QQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV
Sbjct: 389 NQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 448
Query: 73 ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 132
ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK
Sbjct: 449 ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 508
Query: 133 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 192
LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH
Sbjct: 509 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 568
Query: 193 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 252
HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT
Sbjct: 569 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 628
Query: 253 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 312
SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL
Sbjct: 629 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 688
Query: 313 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 368
FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI
Sbjct: 689 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 743
BLAST of CmoCh12G005650 vs. ExPASy TrEMBL
Match:
A0A6J1KRI9 (protein EARLY FLOWERING 3-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111496568 PE=4 SV=1)
HSP 1 Score: 693.3 bits (1788), Expect = 5.3e-196
Identity = 345/355 (97.18%), Postives = 347/355 (97.75%), Query Frame = 0
Query: 13 SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 72
+QQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSH+
Sbjct: 355 NQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHI 414
Query: 73 ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 132
ELKHNDD KKPKHNVECSAENAVGK SLSPAPVAPV CQPSTNGPYKVNRQPTSVS DNK
Sbjct: 415 ELKHNDDLKKPKHNVECSAENAVGKASLSPAPVAPVGCQPSTNGPYKVNRQPTSVSTDNK 474
Query: 133 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 192
LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH
Sbjct: 475 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 534
Query: 193 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 252
HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGL LDQVNWY GDQNQLSGGVAAYYMQHQT
Sbjct: 535 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLALDQVNWYKGDQNQLSGGVAAYYMQHQT 594
Query: 253 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 312
SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSP GKLQGNEANRTAESHD LPL
Sbjct: 595 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPAGKLQGNEANRTAESHDALPL 654
Query: 313 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 368
FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI
Sbjct: 655 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 709
BLAST of CmoCh12G005650 vs. ExPASy TrEMBL
Match:
A0A6J1KUP2 (protein EARLY FLOWERING 3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496568 PE=4 SV=1)
HSP 1 Score: 693.3 bits (1788), Expect = 5.3e-196
Identity = 345/355 (97.18%), Postives = 347/355 (97.75%), Query Frame = 0
Query: 13 SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 72
+QQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSH+
Sbjct: 390 NQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHI 449
Query: 73 ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 132
ELKHNDD KKPKHNVECSAENAVGK SLSPAPVAPV CQPSTNGPYKVNRQPTSVS DNK
Sbjct: 450 ELKHNDDLKKPKHNVECSAENAVGKASLSPAPVAPVGCQPSTNGPYKVNRQPTSVSTDNK 509
Query: 133 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 192
LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH
Sbjct: 510 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 569
Query: 193 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 252
HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGL LDQVNWY GDQNQLSGGVAAYYMQHQT
Sbjct: 570 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLALDQVNWYKGDQNQLSGGVAAYYMQHQT 629
Query: 253 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 312
SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSP GKLQGNEANRTAESHD LPL
Sbjct: 630 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPAGKLQGNEANRTAESHDALPL 689
Query: 313 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 368
FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI
Sbjct: 690 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 744
BLAST of CmoCh12G005650 vs. TAIR 10
Match:
AT2G25930.1 (hydroxyproline-rich glycoprotein family protein )
HSP 1 Score: 148.3 bits (373), Expect = 1.2e-35
Identity = 140/385 (36.36%), Postives = 183/385 (47.53%), Query Frame = 0
Query: 12 ASQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKK-LSSDYAIK- 71
A+QQRVF VQ+FELHRLIKVQ+LIA SP LL ++ FL P KK L S++ +K
Sbjct: 338 ANQQRVFAVQLFELHRLIKVQKLIAASPDLLLDEISFLGKVSAKSYPVKKLLPSEFLVKP 397
Query: 72 --SHVELKHNDDPKK-PKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTS 131
HV +K D +K +H +E SAEN VG+ S Q S P+ N P +
Sbjct: 398 PLPHVVVKQRGDSEKTDQHKMESSAENVVGRLSNQGHH------QQSNYMPFANN--PPA 457
Query: 132 VSADNKLSSWYQPSAA---HQWLVPVLSPSEGLVYKPYPAPGFM--YGGCAPYGPMTPIM 191
A N QP + QWL+PV+SPSEGL+YKP+P YGG + TP++
Sbjct: 458 SPAPNGYCFPPQPPPSGNHQQWLIPVMSPSEGLIYKPHPGMAHTGHYGGYYGHYMPTPMV 517
Query: 192 NPSYGFPASAHHGIGALPSTPMVGGTYFHPYGM--PVMNPGMSG------LPLDQVNWYT 251
P Y H G+G P G YF PYGM +MNP S P +Q+N +
Sbjct: 518 MPQY------HPGMG----FPPPGNGYFPPYGMMPTIMNPYCSSQQQQQQQPNEQMNQF- 577
Query: 252 GDQNQLSGGVAAYYMQHQTSYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPG 311
G L Q + + D + + KS Q ST SSP G
Sbjct: 578 GHPGNL-----------QNTQQQQQRSDNEPAPQQQQQPTKSYPRARKSRQGSTGSSPSG 637
Query: 312 K--LQGNEANRTAESHDVLPLFPIAQPLTEEGPQPS----------DSDQTKRVIRVVPH 367
+ G+++ R + D A T + D RVI+VVPH
Sbjct: 638 PQGISGSKSFRPFAAVDEDSNINNAPEQTMTTTTTTTRTTVTQTTRDGGGVTRVIKVVPH 692
BLAST of CmoCh12G005650 vs. TAIR 10
Match:
AT3G21320.1 (BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT2G25930.1); Has 63 Blast hits to 58 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )
HSP 1 Score: 89.4 bits (220), Expect = 6.7e-18
Identity = 105/357 (29.41%), Postives = 146/357 (40.90%), Query Frame = 0
Query: 13 SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 72
+QQ++F QVFELHRLI VQ+++A SP+L E KL+
Sbjct: 260 NQQKIFAGQVFELHRLIMVQKMVAKSPNLFLE---------------SKLNG-------- 319
Query: 73 ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQP-TSVSADN 132
+KH + H + +A + + PV P + + P S+S +
Sbjct: 320 -VKHG--TMRSSHQLAMAASKVRKPNTENHKPV------PEEYPEHMKPKLPLPSISKEL 379
Query: 133 KLSSWYQ---PSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFP 192
W Q P +QWLVPV++ S+GLVYKP+P P C P + M P YG
Sbjct: 380 VTPIWPQQLLPPPGNQWLVPVITDSDGLVYKPFPGP------CPP--SSSAFMVPVYGQD 439
Query: 193 ASAHHGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYM 252
+ P V + H Y P + +DQ N +
Sbjct: 440 SL------ETPFRFPVSSPFSHSY----FPPPNARTTVDQTN---------------PFG 499
Query: 253 QHQTSYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHD 312
Q Q + S+ Q KSQ +++ STASSPP K +
Sbjct: 500 QFQRWSNTSSHM----TQAIPFSLKKSQESNDSDIHGSTASSPPEK----------HKLE 536
Query: 313 VLPLFPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYD 366
VLPLFP +P + R I+ VPHN SA+ESAARIF+ IQ ER+ D
Sbjct: 560 VLPLFP-TEPTHQTDEYKQKQQPMLRAIKAVPHNSTSASESAARIFRFIQEERRDSD 536
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SNQ6 | 2.6e-35 | 36.32 | Protein HEADING DATE 3B OS=Oryza sativa subsp. japonica OX=39947 GN=HD3B PE=2 SV... | [more] |
O82804 | 1.7e-34 | 36.36 | Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana OX=3702 GN=ELF3 PE=1 SV=1 | [more] |
Q657D6 | 2.9e-34 | 36.27 | ELF3-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ELF3-2 PE=2 SV=2 | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1GHR3 | 1.0e-202 | 99.72 | protein EARLY FLOWERING 3-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC11... | [more] |
A0A6J1GIW1 | 1.0e-202 | 99.72 | protein EARLY FLOWERING 3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11... | [more] |
A0A6J1GIU5 | 1.0e-202 | 99.72 | protein EARLY FLOWERING 3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11... | [more] |
A0A6J1KRI9 | 5.3e-196 | 97.18 | protein EARLY FLOWERING 3-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1114... | [more] |
A0A6J1KUP2 | 5.3e-196 | 97.18 | protein EARLY FLOWERING 3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114... | [more] |
Match Name | E-value | Identity | Description | |
AT2G25930.1 | 1.2e-35 | 36.36 | hydroxyproline-rich glycoprotein family protein | [more] |
AT3G21320.1 | 6.7e-18 | 29.41 | BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein fam... | [more] |