CmoCh12G005650 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G005650
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionProtein EARLY FLOWERING 3
LocationCmo_Chr12: 3496839 .. 3498380 (+)
RNA-Seq ExpressionCmoCh12G005650
SyntenyCmoCh12G005650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTCAGCCGATTGCTAAGCTCTGGGACGCCTCGTAATGTAGGCGACTACTTTACCATGATATATGTCTATGAGCTGATCCTGTTTTCGTGCTATGAATTGATTATTGCTGTTACGTTCAATATGTAGCGATTTGATTTGTTCTTTCAACTTTTGTTACTCTACAGTCAACAAAGAGTATTTGATGTTCAAGTGTTCGAATTGCATAGACTTATCAAGGTAAAGTGATCTAATTTCTTCAAATAGCAGCTTTTGTGATCGAATTGTTCACACTCTCTAAACTTGTCTATGCAAACAGGTCCAACGCTTAATTGCTGGATCACCTCATCTTTTATTTGAAGATGGGATTTTTCTGGACAATTCTCCTCCAAGTCGTCTTCCTACGAAGAAACTTAGCTCAGATTACGCCATCAAATCGCACGTCGAGCTTAAGCACAATGATGACCCGAAGAAGCCAAAACACAATGTGGAATGTTCAGCAGAGAACGCTGTTGGGAAGACTTCTCTTTCTCCTGCACCGGTTGCACCGGTCTGTTGTCAGCCTTCAACGAACGGGCCTTACAAAGTAAATCGACAGCCAACGTCTGTTTCCGCTGATAATAAATTAAGCAGTTGGTACCAGCCATCTGCAGCACATCAGTGGCTGGTCCCGGTATTGTCTCCTTCTGAAGGACTCGTATATAAGCCTTACCCTGCGCCCGGATTCATGTATGGAGGATGTGCACCTTATGGTCCGATGACTCCAATCATGAATCCGTCCTACGGATTTCCAGCTTCTGCTCATCATGGAATTGGGGCGCTTCCTAGTACTCCCATGGTTGGTGGTACTTACTTCCACCCTTATGGCATGCCGGTGATGAATCCTGGTATGTCGGGTTTGCCCCTCGATCAAGTTAACTGGTATACGGGAGATCAGAATCAGTTATCGGGAGGTGTGGCTGCTTACTATATGCAGCATCAAACATCATATGATGTTTCAACACAGAGAGACAGAGATGAAAATCAAGAAACTGTTTCACTAACTGCAAAGTCTCAAGCACCAAAAAGCAATGAGCTACAAGCAAGTACTGCAAGTAGTCCTCCTGGAAAACTGCAAGGAAACGAAGCGAATCGAACCGCTGAAAGCCACGACGTGCTTCCACTTTTCCCTATAGCTCAGCCACTTACAGAGGAAGGCCCTCAACCTTCAGACTCCGACCAAACGAAACGGGTGATTCGAGTCGTGCCACACAATCGGAGATCGGCGAACGAATCAGCTGCTCGTATTTTCCAATCGATTCAAAATGAGAGAAAACAGTATGACTCAATTTAGCCAGTTCTTGTCCCCTCCTTTTTGCTCTCTGTTACCTTAATTTTCTTTGAATTGTCTCACTATGTTGCTTTTTTGGTTCATTTTACAAAACCTCAGCACAGTTTAGTTTATTCATATGTGTATATATATATCTGGAGATTTACATGTCAATGCACTGGGAAACATGAGTGAGGTATCTATGAATGTTGATTTCAAACCCAGTTGTTCATTTCATGTGTGATTATTA

mRNA sequence

ATGTCGGTTCAGCCGATTGCTAAGCTCTGGGACGCCTCTCAACAAAGAGTATTTGATGTTCAAGTGTTCGAATTGCATAGACTTATCAAGGTCCAACGCTTAATTGCTGGATCACCTCATCTTTTATTTGAAGATGGGATTTTTCTGGACAATTCTCCTCCAAGTCGTCTTCCTACGAAGAAACTTAGCTCAGATTACGCCATCAAATCGCACGTCGAGCTTAAGCACAATGATGACCCGAAGAAGCCAAAACACAATGTGGAATGTTCAGCAGAGAACGCTGTTGGGAAGACTTCTCTTTCTCCTGCACCGGTTGCACCGGTCTGTTGTCAGCCTTCAACGAACGGGCCTTACAAAGTAAATCGACAGCCAACGTCTGTTTCCGCTGATAATAAATTAAGCAGTTGGTACCAGCCATCTGCAGCACATCAGTGGCTGGTCCCGGTATTGTCTCCTTCTGAAGGACTCGTATATAAGCCTTACCCTGCGCCCGGATTCATGTATGGAGGATGTGCACCTTATGGTCCGATGACTCCAATCATGAATCCGTCCTACGGATTTCCAGCTTCTGCTCATCATGGAATTGGGGCGCTTCCTAGTACTCCCATGGTTGGTGGTACTTACTTCCACCCTTATGGCATGCCGGTGATGAATCCTGGTATGTCGGGTTTGCCCCTCGATCAAGTTAACTGGTATACGGGAGATCAGAATCAGTTATCGGGAGGTGTGGCTGCTTACTATATGCAGCATCAAACATCATATGATGTTTCAACACAGAGAGACAGAGATGAAAATCAAGAAACTGTTTCACTAACTGCAAAGTCTCAAGCACCAAAAAGCAATGAGCTACAAGCAAGTACTGCAAGTAGTCCTCCTGGAAAACTGCAAGGAAACGAAGCGAATCGAACCGCTGAAAGCCACGACGTGCTTCCACTTTTCCCTATAGCTCAGCCACTTACAGAGGAAGGCCCTCAACCTTCAGACTCCGACCAAACGAAACGGGTGATTCGAGTCGTGCCACACAATCGGAGATCGGCGAACGAATCAGCTGCTCGTATTTTCCAATCGATTCAAAATGAGAGAAAACAGTATGACTCAATTTAGCCAGTTCTTGTCCCCTCCTTTTTGCTCTCTGTTACCTTAATTTTCTTTGAATTGTCTCACTATGTTGCTTTTTTGGTTCATTTTACAAAACCTCAGCACAGTTTAGTTTATTCATATGTGTATATATATATCTGGAGATTTACATGTCAATGCACTGGGAAACATGAGTGAGGTATCTATGAATGTTGATTTCAAACCCAGTTGTTCATTTCATGTGTGATTATTA

Coding sequence (CDS)

ATGTCGGTTCAGCCGATTGCTAAGCTCTGGGACGCCTCTCAACAAAGAGTATTTGATGTTCAAGTGTTCGAATTGCATAGACTTATCAAGGTCCAACGCTTAATTGCTGGATCACCTCATCTTTTATTTGAAGATGGGATTTTTCTGGACAATTCTCCTCCAAGTCGTCTTCCTACGAAGAAACTTAGCTCAGATTACGCCATCAAATCGCACGTCGAGCTTAAGCACAATGATGACCCGAAGAAGCCAAAACACAATGTGGAATGTTCAGCAGAGAACGCTGTTGGGAAGACTTCTCTTTCTCCTGCACCGGTTGCACCGGTCTGTTGTCAGCCTTCAACGAACGGGCCTTACAAAGTAAATCGACAGCCAACGTCTGTTTCCGCTGATAATAAATTAAGCAGTTGGTACCAGCCATCTGCAGCACATCAGTGGCTGGTCCCGGTATTGTCTCCTTCTGAAGGACTCGTATATAAGCCTTACCCTGCGCCCGGATTCATGTATGGAGGATGTGCACCTTATGGTCCGATGACTCCAATCATGAATCCGTCCTACGGATTTCCAGCTTCTGCTCATCATGGAATTGGGGCGCTTCCTAGTACTCCCATGGTTGGTGGTACTTACTTCCACCCTTATGGCATGCCGGTGATGAATCCTGGTATGTCGGGTTTGCCCCTCGATCAAGTTAACTGGTATACGGGAGATCAGAATCAGTTATCGGGAGGTGTGGCTGCTTACTATATGCAGCATCAAACATCATATGATGTTTCAACACAGAGAGACAGAGATGAAAATCAAGAAACTGTTTCACTAACTGCAAAGTCTCAAGCACCAAAAAGCAATGAGCTACAAGCAAGTACTGCAAGTAGTCCTCCTGGAAAACTGCAAGGAAACGAAGCGAATCGAACCGCTGAAAGCCACGACGTGCTTCCACTTTTCCCTATAGCTCAGCCACTTACAGAGGAAGGCCCTCAACCTTCAGACTCCGACCAAACGAAACGGGTGATTCGAGTCGTGCCACACAATCGGAGATCGGCGAACGAATCAGCTGCTCGTATTTTCCAATCGATTCAAAATGAGAGAAAACAGTATGACTCAATTTAG

Protein sequence

MSVQPIAKLWDASQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHVELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNKLSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAHHGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQTSYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPLFPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI
Homology
BLAST of CmoCh12G005650 vs. ExPASy Swiss-Prot
Match: Q9SNQ6 (Protein HEADING DATE 3B OS=Oryza sativa subsp. japonica OX=39947 GN=HD3B PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.6e-35
Identity = 138/380 (36.32%), Postives = 183/380 (48.16%), Query Frame = 0

Query: 13  SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 72
           +QQRVF VQVFELH+L+KVQ+LIA SPH+L E    L N   + L +K    +  +K+  
Sbjct: 416 NQQRVFAVQVFELHKLVKVQKLIAASPHVLIESDPCLGN---ALLGSKNKLVEENLKAQP 475

Query: 73  ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCC--------QPSTNGPYKVNRQP 132
            L    D  +P        +  V K +   +P +P           Q +TNG  K NR+ 
Sbjct: 476 LLVATIDDVEPS-----LQQPEVSKENTEDSPPSPHDTGLGSGQRDQAATNGVSKSNRRA 535

Query: 133 TSVSADNKLSSW---YQPSAAHQWLVPVLSPSEGLVYKPYPAP--------GFMYGGCAP 192
           T V++DNK ++W    QP   +QWLVPV+SP EGLVYKPY  P           Y  C P
Sbjct: 536 TPVASDNKQNNWGVQLQP-PQNQWLVPVMSPLEGLVYKPYSGPCPPAGSILAPFYANCTP 595

Query: 193 YG-PMT--PIMNPSYGFP---ASAHHGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLD 252
              P T    MN +YG P      H G    PS PM    YF P+ +PVMNP      ++
Sbjct: 596 LSLPSTAGDFMNSAYGVPMPHQPQHMGAPGPPSMPM---NYFPPFSIPVMNPTAPAPVVE 655

Query: 253 QVNWYTGDQNQLSGGVAAYYMQHQTSYDVSTQRDRDENQETVSLTAKSQAPKSNELQAST 312
           Q     G    +      +  Q   S ++S            S   +  A + +E QAS+
Sbjct: 656 Q-----GRHPSMPQPYGNFEQQSWISCNMSHP----------SGIWRFHASRDSEAQASS 715

Query: 313 ASSPPGKLQGNEANRTAESHDVLPLFPIAQPLTEEGPQPSDS--DQTKRVIRVVPHNRRS 366
           ASSP  + Q             +  FP       + PQPS S  D    VI+VVPHN R+
Sbjct: 716 ASSPFDRFQ-------CSGSGPVSAFPTVSAQNNQ-PQPSYSSRDNQTNVIKVVPHNSRT 760

BLAST of CmoCh12G005650 vs. ExPASy Swiss-Prot
Match: O82804 (Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana OX=3702 GN=ELF3 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.7e-34
Identity = 140/385 (36.36%), Postives = 183/385 (47.53%), Query Frame = 0

Query: 12  ASQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKK-LSSDYAIK- 71
           A+QQRVF VQ+FELHRLIKVQ+LIA SP LL ++  FL        P KK L S++ +K 
Sbjct: 338 ANQQRVFAVQLFELHRLIKVQKLIAASPDLLLDEISFLGKVSAKSYPVKKLLPSEFLVKP 397

Query: 72  --SHVELKHNDDPKK-PKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTS 131
              HV +K   D +K  +H +E SAEN VG+ S           Q S   P+  N  P +
Sbjct: 398 PLPHVVVKQRGDSEKTDQHKMESSAENVVGRLSNQGHH------QQSNYMPFANN--PPA 457

Query: 132 VSADNKLSSWYQPSAA---HQWLVPVLSPSEGLVYKPYPAPGFM--YGGCAPYGPMTPIM 191
             A N      QP  +    QWL+PV+SPSEGL+YKP+P       YGG   +   TP++
Sbjct: 458 SPAPNGYCFPPQPPPSGNHQQWLIPVMSPSEGLIYKPHPGMAHTGHYGGYYGHYMPTPMV 517

Query: 192 NPSYGFPASAHHGIGALPSTPMVGGTYFHPYGM--PVMNPGMSG------LPLDQVNWYT 251
            P Y      H G+G     P  G  YF PYGM   +MNP  S        P +Q+N + 
Sbjct: 518 MPQY------HPGMG----FPPPGNGYFPPYGMMPTIMNPYCSSQQQQQQQPNEQMNQF- 577

Query: 252 GDQNQLSGGVAAYYMQHQTSYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPG 311
           G    L           Q +     + D +   +      KS        Q ST SSP G
Sbjct: 578 GHPGNL-----------QNTQQQQQRSDNEPAPQQQQQPTKSYPRARKSRQGSTGSSPSG 637

Query: 312 K--LQGNEANRTAESHDVLPLFPIAQPLTEEGPQPS----------DSDQTKRVIRVVPH 367
              + G+++ R   + D       A   T      +          D     RVI+VVPH
Sbjct: 638 PQGISGSKSFRPFAAVDEDSNINNAPEQTMTTTTTTTRTTVTQTTRDGGGVTRVIKVVPH 692

BLAST of CmoCh12G005650 vs. ExPASy Swiss-Prot
Match: Q657D6 (ELF3-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ELF3-2 PE=2 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 2.9e-34
Identity = 136/375 (36.27%), Postives = 184/375 (49.07%), Query Frame = 0

Query: 13  SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSH- 72
           +QQRVF  QVFELH+L+KVQ+LIA SPH+L E    L N   + L +KK  ++  +K+  
Sbjct: 396 NQQRVFAAQVFELHKLVKVQKLIAASPHVLIEGDPCLGN---ALLASKKKMAEENLKAQP 455

Query: 73  VELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVC---CQPSTNGPYKVNRQPTSVS 132
           V +  NDD +      E S EN+  +   SP   APV     Q +  G  K N + T V+
Sbjct: 456 VLVATNDDVQPSLQEPELSKENS-EENPPSPRDTAPVSGHHDQTAKIGASKSNLRATPVA 515

Query: 133 ADNKLSS---WYQPSAAHQWLVPVLSPSEGLVYKPYPAP--------GFMYGGCAPYG-P 192
           +DN+ ++     QP   +QWL+PV+SPSEGLVYKPY  P           Y  C P   P
Sbjct: 516 SDNRQNNCGVQLQP-PQNQWLIPVMSPSEGLVYKPYSGPCPPAGSILAPFYANCTPLRLP 575

Query: 193 MT--PIMNPSYGFPASAHHGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTG 252
            T    MN +YG P          P TP +   YF P+ +PVMNP      ++Q      
Sbjct: 576 STTGDFMNSAYGVPIPHQPQHMGAPGTPTMPMNYFPPFSVPVMNPVALASAVEQ------ 635

Query: 253 DQNQLSGGVAAYYMQHQTSYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGK 312
                      +    Q   ++        N    S   +  A + +E QAS+ASSP  +
Sbjct: 636 ---------GRHPSMPQPYGNLEQHSRMSCNMSHPSGIWRFHASRDSEAQASSASSPFDR 695

Query: 313 LQGNEANRTAESHDVLPLFPIAQPLTEEGPQPSDS--DQTKRVIRVVPHNR-RSANESAA 367
           LQ   +   +        FP A     + PQPS    D    VIRV+PHN  ++A+ESAA
Sbjct: 696 LQCGGSGPVS-------AFPTASAQNTQ-PQPSSGSRDNQTNVIRVIPHNNSQTASESAA 742

BLAST of CmoCh12G005650 vs. ExPASy TrEMBL
Match: A0A6J1GHR3 (protein EARLY FLOWERING 3-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111454283 PE=4 SV=1)

HSP 1 Score: 715.7 bits (1846), Expect = 1.0e-202
Identity = 354/355 (99.72%), Postives = 355/355 (100.00%), Query Frame = 0

Query: 13  SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 72
           +QQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV
Sbjct: 352 NQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 411

Query: 73  ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 132
           ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK
Sbjct: 412 ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 471

Query: 133 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 192
           LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH
Sbjct: 472 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 531

Query: 193 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 252
           HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT
Sbjct: 532 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 591

Query: 253 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 312
           SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL
Sbjct: 592 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 651

Query: 313 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 368
           FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI
Sbjct: 652 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 706

BLAST of CmoCh12G005650 vs. ExPASy TrEMBL
Match: A0A6J1GIW1 (protein EARLY FLOWERING 3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454283 PE=4 SV=1)

HSP 1 Score: 715.7 bits (1846), Expect = 1.0e-202
Identity = 354/355 (99.72%), Postives = 355/355 (100.00%), Query Frame = 0

Query: 13  SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 72
           +QQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV
Sbjct: 387 NQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 446

Query: 73  ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 132
           ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK
Sbjct: 447 ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 506

Query: 133 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 192
           LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH
Sbjct: 507 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 566

Query: 193 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 252
           HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT
Sbjct: 567 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 626

Query: 253 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 312
           SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL
Sbjct: 627 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 686

Query: 313 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 368
           FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI
Sbjct: 687 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 741

BLAST of CmoCh12G005650 vs. ExPASy TrEMBL
Match: A0A6J1GIU5 (protein EARLY FLOWERING 3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454283 PE=4 SV=1)

HSP 1 Score: 715.7 bits (1846), Expect = 1.0e-202
Identity = 354/355 (99.72%), Postives = 355/355 (100.00%), Query Frame = 0

Query: 13  SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 72
           +QQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV
Sbjct: 389 NQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 448

Query: 73  ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 132
           ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK
Sbjct: 449 ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 508

Query: 133 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 192
           LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH
Sbjct: 509 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 568

Query: 193 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 252
           HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT
Sbjct: 569 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 628

Query: 253 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 312
           SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL
Sbjct: 629 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 688

Query: 313 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 368
           FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI
Sbjct: 689 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 743

BLAST of CmoCh12G005650 vs. ExPASy TrEMBL
Match: A0A6J1KRI9 (protein EARLY FLOWERING 3-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111496568 PE=4 SV=1)

HSP 1 Score: 693.3 bits (1788), Expect = 5.3e-196
Identity = 345/355 (97.18%), Postives = 347/355 (97.75%), Query Frame = 0

Query: 13  SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 72
           +QQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSH+
Sbjct: 355 NQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHI 414

Query: 73  ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 132
           ELKHNDD KKPKHNVECSAENAVGK SLSPAPVAPV CQPSTNGPYKVNRQPTSVS DNK
Sbjct: 415 ELKHNDDLKKPKHNVECSAENAVGKASLSPAPVAPVGCQPSTNGPYKVNRQPTSVSTDNK 474

Query: 133 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 192
           LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH
Sbjct: 475 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 534

Query: 193 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 252
           HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGL LDQVNWY GDQNQLSGGVAAYYMQHQT
Sbjct: 535 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLALDQVNWYKGDQNQLSGGVAAYYMQHQT 594

Query: 253 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 312
           SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSP GKLQGNEANRTAESHD LPL
Sbjct: 595 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPAGKLQGNEANRTAESHDALPL 654

Query: 313 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 368
           FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI
Sbjct: 655 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 709

BLAST of CmoCh12G005650 vs. ExPASy TrEMBL
Match: A0A6J1KUP2 (protein EARLY FLOWERING 3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496568 PE=4 SV=1)

HSP 1 Score: 693.3 bits (1788), Expect = 5.3e-196
Identity = 345/355 (97.18%), Postives = 347/355 (97.75%), Query Frame = 0

Query: 13  SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 72
           +QQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSH+
Sbjct: 390 NQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHI 449

Query: 73  ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTSVSADNK 132
           ELKHNDD KKPKHNVECSAENAVGK SLSPAPVAPV CQPSTNGPYKVNRQPTSVS DNK
Sbjct: 450 ELKHNDDLKKPKHNVECSAENAVGKASLSPAPVAPVGCQPSTNGPYKVNRQPTSVSTDNK 509

Query: 133 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 192
           LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH
Sbjct: 510 LSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAH 569

Query: 193 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQT 252
           HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGL LDQVNWY GDQNQLSGGVAAYYMQHQT
Sbjct: 570 HGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLALDQVNWYKGDQNQLSGGVAAYYMQHQT 629

Query: 253 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHDVLPL 312
           SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSP GKLQGNEANRTAESHD LPL
Sbjct: 630 SYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPAGKLQGNEANRTAESHDALPL 689

Query: 313 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 368
           FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI
Sbjct: 690 FPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 744

BLAST of CmoCh12G005650 vs. TAIR 10
Match: AT2G25930.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-35
Identity = 140/385 (36.36%), Postives = 183/385 (47.53%), Query Frame = 0

Query: 12  ASQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKK-LSSDYAIK- 71
           A+QQRVF VQ+FELHRLIKVQ+LIA SP LL ++  FL        P KK L S++ +K 
Sbjct: 338 ANQQRVFAVQLFELHRLIKVQKLIAASPDLLLDEISFLGKVSAKSYPVKKLLPSEFLVKP 397

Query: 72  --SHVELKHNDDPKK-PKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQPTS 131
              HV +K   D +K  +H +E SAEN VG+ S           Q S   P+  N  P +
Sbjct: 398 PLPHVVVKQRGDSEKTDQHKMESSAENVVGRLSNQGHH------QQSNYMPFANN--PPA 457

Query: 132 VSADNKLSSWYQPSAA---HQWLVPVLSPSEGLVYKPYPAPGFM--YGGCAPYGPMTPIM 191
             A N      QP  +    QWL+PV+SPSEGL+YKP+P       YGG   +   TP++
Sbjct: 458 SPAPNGYCFPPQPPPSGNHQQWLIPVMSPSEGLIYKPHPGMAHTGHYGGYYGHYMPTPMV 517

Query: 192 NPSYGFPASAHHGIGALPSTPMVGGTYFHPYGM--PVMNPGMSG------LPLDQVNWYT 251
            P Y      H G+G     P  G  YF PYGM   +MNP  S        P +Q+N + 
Sbjct: 518 MPQY------HPGMG----FPPPGNGYFPPYGMMPTIMNPYCSSQQQQQQQPNEQMNQF- 577

Query: 252 GDQNQLSGGVAAYYMQHQTSYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPG 311
           G    L           Q +     + D +   +      KS        Q ST SSP G
Sbjct: 578 GHPGNL-----------QNTQQQQQRSDNEPAPQQQQQPTKSYPRARKSRQGSTGSSPSG 637

Query: 312 K--LQGNEANRTAESHDVLPLFPIAQPLTEEGPQPS----------DSDQTKRVIRVVPH 367
              + G+++ R   + D       A   T      +          D     RVI+VVPH
Sbjct: 638 PQGISGSKSFRPFAAVDEDSNINNAPEQTMTTTTTTTRTTVTQTTRDGGGVTRVIKVVPH 692

BLAST of CmoCh12G005650 vs. TAIR 10
Match: AT3G21320.1 (BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT2G25930.1); Has 63 Blast hits to 58 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-18
Identity = 105/357 (29.41%), Postives = 146/357 (40.90%), Query Frame = 0

Query: 13  SQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLSSDYAIKSHV 72
           +QQ++F  QVFELHRLI VQ+++A SP+L  E                KL+         
Sbjct: 260 NQQKIFAGQVFELHRLIMVQKMVAKSPNLFLE---------------SKLNG-------- 319

Query: 73  ELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYKVNRQP-TSVSADN 132
            +KH     +  H +  +A       + +  PV      P     +   + P  S+S + 
Sbjct: 320 -VKHG--TMRSSHQLAMAASKVRKPNTENHKPV------PEEYPEHMKPKLPLPSISKEL 379

Query: 133 KLSSWYQ---PSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFP 192
               W Q   P   +QWLVPV++ S+GLVYKP+P P      C P    +  M P YG  
Sbjct: 380 VTPIWPQQLLPPPGNQWLVPVITDSDGLVYKPFPGP------CPP--SSSAFMVPVYGQD 439

Query: 193 ASAHHGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYM 252
           +         P    V   + H Y      P  +   +DQ N                + 
Sbjct: 440 SL------ETPFRFPVSSPFSHSY----FPPPNARTTVDQTN---------------PFG 499

Query: 253 QHQTSYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPPGKLQGNEANRTAESHD 312
           Q Q   + S+       Q       KSQ    +++  STASSPP K             +
Sbjct: 500 QFQRWSNTSSHM----TQAIPFSLKKSQESNDSDIHGSTASSPPEK----------HKLE 536

Query: 313 VLPLFPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYD 366
           VLPLFP  +P  +            R I+ VPHN  SA+ESAARIF+ IQ ER+  D
Sbjct: 560 VLPLFP-TEPTHQTDEYKQKQQPMLRAIKAVPHNSTSASESAARIFRFIQEERRDSD 536

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SNQ62.6e-3536.32Protein HEADING DATE 3B OS=Oryza sativa subsp. japonica OX=39947 GN=HD3B PE=2 SV... [more]
O828041.7e-3436.36Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana OX=3702 GN=ELF3 PE=1 SV=1[more]
Q657D62.9e-3436.27ELF3-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ELF3-2 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A6J1GHR31.0e-20299.72protein EARLY FLOWERING 3-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1GIW11.0e-20299.72protein EARLY FLOWERING 3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1GIU51.0e-20299.72protein EARLY FLOWERING 3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1KRI95.3e-19697.18protein EARLY FLOWERING 3-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1KUP25.3e-19697.18protein EARLY FLOWERING 3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
Match NameE-valueIdentityDescription
AT2G25930.11.2e-3536.36hydroxyproline-rich glycoprotein family protein [more]
AT3G21320.16.7e-1829.41BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein fam... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 269..303
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..304
IPR039319Protein EARLY FLOWERING 3-likePANTHERPTHR34281PROTEIN EARLY FLOWERING 3coord: 13..366

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G005650.1CmoCh12G005650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:2000028 regulation of photoperiodism, flowering