CmoCh12G005570 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G005570
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor RAX3-like
LocationCmo_Chr12: 3429902 .. 3431048 (-)
RNA-Seq ExpressionCmoCh12G005570
SyntenyCmoCh12G005570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAGGAGAGAGGGAAGAGAGAACCATGGGGAGAGCTCCTTGCTGTGACAAAGCCAATGTCAAGAAAGGCCCATGGTCTGCTGAAGAAGACACCAAGCTCAAGTCTTACATTGAACAACATGGAACTGGTGGGAACTGGATTGCTTTGCCTCAAAAAATTGGTAAAAATTCAATCTTTTTCATCTTGTTCTTCTTGTTTTGATCCAATTTCTTCTGGGGTTTCTGTTTTTTGGAGTTAAAATTTAGCCCTTTAAACGAAATTAGGCCTAAAGAGATGTGGAAAAAGTTGTCGATTGAGATGGCTGAATTATCTCCGTCCGAACATCAAGCATGGAGGTTTCTCCGAAGAAGAAGATAGAATCATTTGTAGTCTCTATCTTAGTATCGGAAGCAGGTAATTTTTTTTTCTTCAATCAAATCCCGAATCCCAAATCCCGAATCGTTTCATTTTAATTAGGGTTTGAGGTTCGAGAAAAAAAAAATCAATTCTAAGGGTTTGGTATGGAATAGGTGGTCTATAATTGCAGCACAGTTACCAGGAAGAACAGATAACGACATAAAGAACTACTGGAACACAAGGTTGAAGAAGAAGCTATTTGGGAAGCAAAGGAAAGATCATCATCAACAACAACAACAGGCAACTCGTCGAGGAAACGCCCTAAGGCATCATGGGACGGTGAATAAAAGCAATAGCGCCATTCCTTATTGGCCTCAGCAGCAGCAGTTCCCAGTGGCACCAAGCTACTATAACAACATGCTATCATCTGACCATATCAACCCAATTGAGAATTTGAGCAAATTTGGAGCTCAATTTATGGAACAAAGTGTGTACAACAACAACAATGCAAATGGGTATGGAAATGGGTATTATTTTCCATTGCTTCAAGGGCAAAGCAGCAGCCAAATGGTGGATCTTGAGAATTATGACATGGGGTTTGATGATCCAAGAAGGGTTTTGTGTGGATTTGAGTTTCTGTATGGAGATCATCATAATCAGATAATGGGGACTAGTAATAGCCATGGCTATGAAATGGGGCCTCTGATTTCTTCTTGCCCTTCAAATTACGAAGCAATGCTGCAAGATTTGTCAACCACGACTCAAGAATATGATACTCACTTGAAGATAATGGATAGCAATGCAGTATGA

mRNA sequence

ATTAGGAGAGAGGGAAGAGAGAACCATGGGGAGAGCTCCTTGCTGTGACAAAGCCAATGTCAAGAAAGGCCCATGGTCTGCTGAAGAAGACACCAAGCTCAAGTCTTACATTGAACAACATGGAACTGGTGGGAACTGGATTGCTTTGCCTCAAAAAATTGGCCTAAAGAGATGTGGAAAAAGTTGTCGATTGAGATGGCTGAATTATCTCCGTCCGAACATCAAGCATGGAGGTTTCTCCGAAGAAGAAGATAGAATCATTTGTAGTCTCTATCTTAGTATCGGAAGCAGGTTCGAGAAAAAAAAAATCAATTCTAAGGGTTTGGTATGGAATAGGTGGTCTATAATTGCAGCACAGTTACCAGGAAGAACAGATAACGACATAAAGAACTACTGGAACACAAGGTTGAAGAAGAAGCTATTTGGGAAGCAAAGGAAAGATCATCATCAACAACAACAACAGGCAACTCGTCGAGGAAACGCCCTAAGGCATCATGGGACGGTGAATAAAAGCAATAGCGCCATTCCTTATTGGCCTCAGCAGCAGCAGTTCCCAGTGGCACCAAGCTACTATAACAACATGCTATCATCTGACCATATCAACCCAATTGAGAATTTGAGCAAATTTGGAGCTCAATTTATGGAACAAAGTGTGTACAACAACAACAATGCAAATGGGTATGGAAATGGGTATTATTTTCCATTGCTTCAAGGGCAAAGCAGCAGCCAAATGGTGGATCTTGAGAATTATGACATGGGGTTTGATGATCCAAGAAGGGTTTTGTGTGGATTTGAGTTTCTGTATGGAGATCATCATAATCAGATAATGGGGACTAGTAATAGCCATGGCTATGAAATGGGGCCTCTGATTTCTTCTTGCCCTTCAAATTACGAAGCAATGCTGCAAGATTTGTCAACCACGACTCAAGAATATGATACTCACTTGAAGATAATGGATAGCAATGCAGTATGA

Coding sequence (CDS)

ATGGGGAGAGCTCCTTGCTGTGACAAAGCCAATGTCAAGAAAGGCCCATGGTCTGCTGAAGAAGACACCAAGCTCAAGTCTTACATTGAACAACATGGAACTGGTGGGAACTGGATTGCTTTGCCTCAAAAAATTGGCCTAAAGAGATGTGGAAAAAGTTGTCGATTGAGATGGCTGAATTATCTCCGTCCGAACATCAAGCATGGAGGTTTCTCCGAAGAAGAAGATAGAATCATTTGTAGTCTCTATCTTAGTATCGGAAGCAGGTTCGAGAAAAAAAAAATCAATTCTAAGGGTTTGGTATGGAATAGGTGGTCTATAATTGCAGCACAGTTACCAGGAAGAACAGATAACGACATAAAGAACTACTGGAACACAAGGTTGAAGAAGAAGCTATTTGGGAAGCAAAGGAAAGATCATCATCAACAACAACAACAGGCAACTCGTCGAGGAAACGCCCTAAGGCATCATGGGACGGTGAATAAAAGCAATAGCGCCATTCCTTATTGGCCTCAGCAGCAGCAGTTCCCAGTGGCACCAAGCTACTATAACAACATGCTATCATCTGACCATATCAACCCAATTGAGAATTTGAGCAAATTTGGAGCTCAATTTATGGAACAAAGTGTGTACAACAACAACAATGCAAATGGGTATGGAAATGGGTATTATTTTCCATTGCTTCAAGGGCAAAGCAGCAGCCAAATGGTGGATCTTGAGAATTATGACATGGGGTTTGATGATCCAAGAAGGGTTTTGTGTGGATTTGAGTTTCTGTATGGAGATCATCATAATCAGATAATGGGGACTAGTAATAGCCATGGCTATGAAATGGGGCCTCTGATTTCTTCTTGCCCTTCAAATTACGAAGCAATGCTGCAAGATTTGTCAACCACGACTCAAGAATATGATACTCACTTGAAGATAATGGATAGCAATGCAGTATGA

Protein sequence

MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDNDIKNYWNTRLKKKLFGKQRKDHHQQQQQATRRGNALRHHGTVNKSNSAIPYWPQQQQFPVAPSYYNNMLSSDHINPIENLSKFGAQFMEQSVYNNNNANGYGNGYYFPLLQGQSSSQMVDLENYDMGFDDPRRVLCGFEFLYGDHHNQIMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTTTQEYDTHLKIMDSNAV
Homology
BLAST of CmoCh12G005570 vs. ExPASy Swiss-Prot
Match: Q9FKL2 (Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 2.2e-62
Identity = 125/203 (61.58%), Postives = 144/203 (70.94%), Query Frame = 0

Query: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWS EED KLK YI+++GTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDNDI 120
           YLRPNIKHGGFSEEEDRII SLY+SIGS               RWSIIAAQLPGRTDNDI
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGS---------------RWSIIAAQLPGRTDNDI 120

Query: 121 KNYWNTRLKKKLFGKQRKDHHQQQQQATRRGNALRHHGT---VNKSNSAIPYWP-----Q 180
           KNYWNT+LKKKL G+Q++ + Q     +   N   ++      N SNSA+         Q
Sbjct: 121 KNYWNTKLKKKLLGRQKQMNRQDSITDSTENNLSNNNNNKSPQNLSNSALERLQLHMQLQ 180

Query: 181 QQQFPVAPSYYNNMLSSDHINPI 196
             Q P + S+YNN +    ++P+
Sbjct: 181 NLQSPFS-SFYNNPILWPKLHPL 187

BLAST of CmoCh12G005570 vs. ExPASy Swiss-Prot
Match: Q9M2Y9 (Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 2.2e-62
Identity = 136/270 (50.37%), Postives = 163/270 (60.37%), Query Frame = 0

Query: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWS EED KLKSYIE  GTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDNDI 120
           YLRPNIKHGGFSEEE+ IICSLYL+IGS               RWSIIAAQLPGRTDNDI
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGS---------------RWSIIAAQLPGRTDNDI 120

Query: 121 KNYWNTRLKKKLFGKQRKD-----------------HHQQQQQATRRGNALRHHGTVNKS 180
           KNYWNTRLKKKL  KQRK+                  HQQQQ  T           + + 
Sbjct: 121 KNYWNTRLKKKLINKQRKELQEACMEQQEMMVMMKRQHQQQQIQT---------SFMMRQ 180

Query: 181 NSAIPYWPQQQQFPVAPSYYNNMLSS----DHINP--IENLSKFGAQFMEQS---VYNNN 240
           +  +  WP        P+ + N  +S    + + P  I+N+ K   Q +E++    + ++
Sbjct: 181 DQTMFTWPLHHHNVQVPALFMNQTNSFCDQEDVKPVLIKNMVKIEDQELEKTNPHHHQDS 240

Query: 241 NANGYGNGYYFPLLQGQSSSQMVDLENYDM 245
             N + +  +  LL   + + +   E + M
Sbjct: 241 MTNAFDHLSFSQLLLDPNHNHLGSGEGFSM 246

BLAST of CmoCh12G005570 vs. ExPASy Swiss-Prot
Match: F4JSU0 (Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 6.6e-59
Identity = 108/151 (71.52%), Postives = 118/151 (78.15%), Query Frame = 0

Query: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDK  VKKGPWS EED  LKSYIE+HGTG NWI+LPQ+IG+KRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDNDI 120
           YLRPN+KHGGF++EED IICSLY++IGS               RWSIIA+QLPGRTDNDI
Sbjct: 61  YLRPNLKHGGFTDEEDYIICSLYITIGS---------------RWSIIASQLPGRTDNDI 120

Query: 121 KNYWNTRLKKKLFGKQRKDHHQQQQQATRRG 152
           KNYWNTRLKKKL  KQ K  HQQ      RG
Sbjct: 121 KNYWNTRLKKKLLSKQGKAFHQQLNVKFERG 136

BLAST of CmoCh12G005570 vs. ExPASy Swiss-Prot
Match: Q9SJL7 (Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 9.8e-55
Identity = 108/176 (61.36%), Postives = 119/176 (67.61%), Query Frame = 0

Query: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVK+GPWS EED KLK YIE+ GTGGNWIALP K GL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDNDI 120
           YLRPNI+HG F+EEED II SL+ SIGS               RWS+IAA L GRTDNDI
Sbjct: 61  YLRPNIRHGDFTEEEDNIIYSLFASIGS---------------RWSVIAAHLQGRTDNDI 120

Query: 121 KNYWNTRLKKKLFGKQRKDHHQQQQQATRRGNALRHHGT-VNKSNSAIPYWPQQQQ 176
           KNYWNT+LKKKL        H     AT   +A     +  N  NS +PY P   Q
Sbjct: 121 KNYWNTKLKKKLIATMAPPPHHHLAIATSSSSASPSSSSHYNMINSLLPYNPSTNQ 161

BLAST of CmoCh12G005570 vs. ExPASy Swiss-Prot
Match: Q9FG68 (Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.9e-51
Identity = 116/234 (49.57%), Postives = 138/234 (58.97%), Query Frame = 0

Query: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDK  VK+GPWS EED+KL+ YIE++G GGNWI+ P K GL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDNDI 120
           YLRPNIKHG FSEEEDRII SL+ +IGS               RWSIIAA LPGRTDNDI
Sbjct: 61  YLRPNIKHGDFSEEEDRIIFSLFAAIGS---------------RWSIIAAHLPGRTDNDI 120

Query: 121 KNYWNTRLKKKLFGKQRKDHHQQQ--------QQATRRGNALRHHGTVNKSNSAIPYWPQ 180
           KNYWNT+L+KKL                     Q  +R  +     T   S+S  PY   
Sbjct: 121 KNYWNTKLRKKLLSSSSDSSSSAMASPYLNPISQDVKRPTS----PTTIPSSSYNPYAEN 180

Query: 181 QQQFPVAP--SYYNNMLSSD-----HINPIENLSKFGAQFMEQSVYNNNNANGY 220
             Q+P     S  N   + D     +INP  N  +    ++  S  N +NANG+
Sbjct: 181 PNQYPTKSLISSINGFEAGDKQIISYINP--NYPQ--DLYLSDSNNNTSNANGF 211

BLAST of CmoCh12G005570 vs. ExPASy TrEMBL
Match: A0A6J1GJT2 (transcription factor RAX3-like OS=Cucurbita moschata OX=3662 GN=LOC111454503 PE=4 SV=1)

HSP 1 Score: 625.5 bits (1612), Expect = 1.2e-175
Identity = 300/315 (95.24%), Postives = 300/315 (95.24%), Query Frame = 0

Query: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDNDI 120
           YLRPNIKHGGFSEEEDRIICSLYLSIGS               RWSIIAAQLPGRTDNDI
Sbjct: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGS---------------RWSIIAAQLPGRTDNDI 120

Query: 121 KNYWNTRLKKKLFGKQRKDHHQQQQQATRRGNALRHHGTVNKSNSAIPYWPQQQQFPVAP 180
           KNYWNTRLKKKLFGKQRKDHHQQQQQATRRGNALRHHGTVNKSNSAIPYWPQQQQFPVAP
Sbjct: 121 KNYWNTRLKKKLFGKQRKDHHQQQQQATRRGNALRHHGTVNKSNSAIPYWPQQQQFPVAP 180

Query: 181 SYYNNMLSSDHINPIENLSKFGAQFMEQSVYNNNNANGYGNGYYFPLLQGQSSSQMVDLE 240
           SYYNNMLSSDHINPIENLSKFGAQFMEQSVYNNNNANGYGNGYYFPLLQGQSSSQMVDLE
Sbjct: 181 SYYNNMLSSDHINPIENLSKFGAQFMEQSVYNNNNANGYGNGYYFPLLQGQSSSQMVDLE 240

Query: 241 NYDMGFDDPRRVLCGFEFLYGDHHNQIMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTTT 300
           NYDMGFDDPRRVLCGFEFLYGDHHNQIMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTTT
Sbjct: 241 NYDMGFDDPRRVLCGFEFLYGDHHNQIMGTSNSHGYEMGPLISSCPSNYEAMLQDLSTTT 300

Query: 301 QEYDTHLKIMDSNAV 316
           QEYDTHLKIMDSNAV
Sbjct: 301 QEYDTHLKIMDSNAV 300

BLAST of CmoCh12G005570 vs. ExPASy TrEMBL
Match: A0A6J1KQX4 (transcription factor RAX3-like OS=Cucurbita maxima OX=3661 GN=LOC111496413 PE=4 SV=1)

HSP 1 Score: 575.9 bits (1483), Expect = 1.1e-160
Identity = 283/319 (88.71%), Postives = 291/319 (91.22%), Query Frame = 0

Query: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKA+VKKGPWS EEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKASVKKGPWSTEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDNDI 120
           YLRPNIKHGGFSEEEDRIICSLYLSIGS               RWSIIAAQLPGRTDNDI
Sbjct: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGS---------------RWSIIAAQLPGRTDNDI 120

Query: 121 KNYWNTRLKKKLFGKQRKDHHQQQQQATRRGNALRHHGTVNKSNSAIPYWP-QQQQFPVA 180
           KNYWNTRLKKKLFGKQRK+  QQQQQA+RRGNALRHHGTVNKSNS IPYWP QQQQ PVA
Sbjct: 121 KNYWNTRLKKKLFGKQRKE-QQQQQQASRRGNALRHHGTVNKSNSTIPYWPQQQQQLPVA 180

Query: 181 PSYY---NNMLSSDHINPIENLSKFGAQFMEQSVYNNNNANGYGNGYYFPLLQGQSSSQM 240
           PSYY   NNM SSDHINPIE LSKFGAQFM++SVY NNNANGYGN YYFPLLQGQSS+QM
Sbjct: 181 PSYYNNNNNMASSDHINPIEKLSKFGAQFMDESVY-NNNANGYGNAYYFPLLQGQSSTQM 240

Query: 241 VDLENYDMGFDDPRRVLCGFEFLYGDHHNQIMGTSNSHGYEMGPLISSCPSNYEAMLQDL 300
           VDLENYDMGFDDPRRVLCGFEF+YGDHHNQIMGTSNSHGYEMGPLISSCPSNYEAMLQDL
Sbjct: 241 VDLENYDMGFDDPRRVLCGFEFVYGDHHNQIMGTSNSHGYEMGPLISSCPSNYEAMLQDL 300

Query: 301 STTTQEYDTHLKIMDSNAV 316
           STTTQEYDTHLKI+DSNAV
Sbjct: 301 STTTQEYDTHLKILDSNAV 302

BLAST of CmoCh12G005570 vs. ExPASy TrEMBL
Match: A0A6J1K654 (transcription factor RAX3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492028 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 8.2e-113
Identity = 222/335 (66.27%), Postives = 254/335 (75.82%), Query Frame = 0

Query: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWS EED KLKSYIE+HGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDNDI 120
           YLRPNIKHGGFSEEEDRIICSLY+SIGS               RWSIIAAQLPGRTDNDI
Sbjct: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGS---------------RWSIIAAQLPGRTDNDI 120

Query: 121 KNYWNTRLKKKLFGKQRKDHHQQQQQATRRGNALR----------------HHG------ 180
           KNYWNTRLKKKLFGKQRK+HH  QQQATRRGNAL+                ++G      
Sbjct: 121 KNYWNTRLKKKLFGKQRKEHH-HQQQATRRGNALKQMQQMKRPSETNNNTTNYGAENNNI 180

Query: 181 ---TVNKSNSAIPYWPQQQQFPVAPSYYNNML-SSDHINPIENLSKFGAQFM-EQSVYNN 240
              ++N++++ IPYWPQQQQ P+AP Y    L +SD INPIENLSKFG Q M E+S Y+N
Sbjct: 181 AIFSLNEAHNNIPYWPQQQQLPLAPHYNQGSLPASDPINPIENLSKFGGQSMGEESGYSN 240

Query: 241 NNANGYGNGYYFPLLQGQSSSQM--VDLENYDM-GFDDPRRVLCGFEFLYGDHHNQIMGT 300
            N N  G G++ P++QGQSS+QM  V++ENY+M G++DPRRVLCG EFL+ DHH QI+GT
Sbjct: 241 MNNNANGYGHFLPIMQGQSSNQMVEVEVENYNMTGYEDPRRVLCGLEFLFEDHH-QILGT 300

Query: 301 SNSHGYEMGPL-ISSCPSNYEAMLQDLSTTTQEYD 305
            N HG EMG L  SSCP+    MLQDL TT ++Y+
Sbjct: 301 -NGHGCEMGSLQSSSCPNYEPIMLQDLPTTAEQYN 317

BLAST of CmoCh12G005570 vs. ExPASy TrEMBL
Match: A0A6J1HEB2 (transcription factor RAX3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462761 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 5.3e-112
Identity = 220/335 (65.67%), Postives = 253/335 (75.52%), Query Frame = 0

Query: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWS EED KLKSYIE+HGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDNDI 120
           YLRPNIKHGGFSEEEDRIICSLY+SIGS               RWSIIAAQLPGRTDNDI
Sbjct: 61  YLRPNIKHGGFSEEEDRIICSLYVSIGS---------------RWSIIAAQLPGRTDNDI 120

Query: 121 KNYWNTRLKKKLFGKQRKDHHQQQQQATRRGNALR----------------HHG------ 180
           KNYWNTRLKKKLFGKQRK+HH  QQQATRRGNAL+                ++G      
Sbjct: 121 KNYWNTRLKKKLFGKQRKEHH-HQQQATRRGNALKQMQQMKRPLENNNNATNYGAENNNI 180

Query: 181 ---TVNKSNSAIPYWPQQQQFPVAPSYYNNML-SSDHINPIENLSKFGAQFM-EQSVYNN 240
              ++N++++ IPYWPQQQQ P+ P Y    L +SD INPIENLSKFG Q M E+S Y+N
Sbjct: 181 AIFSLNEAHNNIPYWPQQQQLPLGPHYNQGSLPASDPINPIENLSKFGGQSMGEESGYSN 240

Query: 241 NNANGYGNGYYFPLLQGQSSSQM--VDLENYDM-GFDDPRRVLCGFEFLYGDHHNQIMGT 300
            N N  G G++ P++QGQSS+QM  V++ENY+M G++DPRRVLCG EFL+ DHH QI+GT
Sbjct: 241 MNNNANGYGHFLPIMQGQSSNQMVEVEVENYNMTGYEDPRRVLCGLEFLFEDHH-QILGT 300

Query: 301 SNSHGYEMGPL-ISSCPSNYEAMLQDLSTTTQEYD 305
            N HG +MG L  SSCP+    MLQDL TT ++Y+
Sbjct: 301 -NGHGCDMGSLQSSSCPNYEPIMLQDLPTTAEQYN 317

BLAST of CmoCh12G005570 vs. ExPASy TrEMBL
Match: A0A6J1K871 (transcription factor RAX3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492028 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 2.0e-111
Identity = 222/336 (66.07%), Postives = 254/336 (75.60%), Query Frame = 0

Query: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKI-GLKRCGKSCRLRWL 60
           MGRAPCCDKANVKKGPWS EED KLKSYIE+HGTGGNWIALPQKI GLKRCGKSCRLRWL
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIVGLKRCGKSCRLRWL 60

Query: 61  NYLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDND 120
           NYLRPNIKHGGFSEEEDRIICSLY+SIGS               RWSIIAAQLPGRTDND
Sbjct: 61  NYLRPNIKHGGFSEEEDRIICSLYVSIGS---------------RWSIIAAQLPGRTDND 120

Query: 121 IKNYWNTRLKKKLFGKQRKDHHQQQQQATRRGNALR----------------HHG----- 180
           IKNYWNTRLKKKLFGKQRK+HH  QQQATRRGNAL+                ++G     
Sbjct: 121 IKNYWNTRLKKKLFGKQRKEHH-HQQQATRRGNALKQMQQMKRPSETNNNTTNYGAENNN 180

Query: 181 ----TVNKSNSAIPYWPQQQQFPVAPSYYNNML-SSDHINPIENLSKFGAQFM-EQSVYN 240
               ++N++++ IPYWPQQQQ P+AP Y    L +SD INPIENLSKFG Q M E+S Y+
Sbjct: 181 IAIFSLNEAHNNIPYWPQQQQLPLAPHYNQGSLPASDPINPIENLSKFGGQSMGEESGYS 240

Query: 241 NNNANGYGNGYYFPLLQGQSSSQM--VDLENYDM-GFDDPRRVLCGFEFLYGDHHNQIMG 300
           N N N  G G++ P++QGQSS+QM  V++ENY+M G++DPRRVLCG EFL+ DHH QI+G
Sbjct: 241 NMNNNANGYGHFLPIMQGQSSNQMVEVEVENYNMTGYEDPRRVLCGLEFLFEDHH-QILG 300

Query: 301 TSNSHGYEMGPL-ISSCPSNYEAMLQDLSTTTQEYD 305
           T N HG EMG L  SSCP+    MLQDL TT ++Y+
Sbjct: 301 T-NGHGCEMGSLQSSSCPNYEPIMLQDLPTTAEQYN 318

BLAST of CmoCh12G005570 vs. TAIR 10
Match: AT3G49690.1 (myb domain protein 84 )

HSP 1 Score: 240.7 bits (613), Expect = 1.6e-63
Identity = 136/270 (50.37%), Postives = 163/270 (60.37%), Query Frame = 0

Query: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWS EED KLKSYIE  GTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDNDI 120
           YLRPNIKHGGFSEEE+ IICSLYL+IGS               RWSIIAAQLPGRTDNDI
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGS---------------RWSIIAAQLPGRTDNDI 120

Query: 121 KNYWNTRLKKKLFGKQRKD-----------------HHQQQQQATRRGNALRHHGTVNKS 180
           KNYWNTRLKKKL  KQRK+                  HQQQQ  T           + + 
Sbjct: 121 KNYWNTRLKKKLINKQRKELQEACMEQQEMMVMMKRQHQQQQIQT---------SFMMRQ 180

Query: 181 NSAIPYWPQQQQFPVAPSYYNNMLSS----DHINP--IENLSKFGAQFMEQS---VYNNN 240
           +  +  WP        P+ + N  +S    + + P  I+N+ K   Q +E++    + ++
Sbjct: 181 DQTMFTWPLHHHNVQVPALFMNQTNSFCDQEDVKPVLIKNMVKIEDQELEKTNPHHHQDS 240

Query: 241 NANGYGNGYYFPLLQGQSSSQMVDLENYDM 245
             N + +  +  LL   + + +   E + M
Sbjct: 241 MTNAFDHLSFSQLLLDPNHNHLGSGEGFSM 246

BLAST of CmoCh12G005570 vs. TAIR 10
Match: AT5G57620.1 (myb domain protein 36 )

HSP 1 Score: 240.7 bits (613), Expect = 1.6e-63
Identity = 125/203 (61.58%), Postives = 144/203 (70.94%), Query Frame = 0

Query: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWS EED KLK YI+++GTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDNDI 120
           YLRPNIKHGGFSEEEDRII SLY+SIGS               RWSIIAAQLPGRTDNDI
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGS---------------RWSIIAAQLPGRTDNDI 120

Query: 121 KNYWNTRLKKKLFGKQRKDHHQQQQQATRRGNALRHHGT---VNKSNSAIPYWP-----Q 180
           KNYWNT+LKKKL G+Q++ + Q     +   N   ++      N SNSA+         Q
Sbjct: 121 KNYWNTKLKKKLLGRQKQMNRQDSITDSTENNLSNNNNNKSPQNLSNSALERLQLHMQLQ 180

Query: 181 QQQFPVAPSYYNNMLSSDHINPI 196
             Q P + S+YNN +    ++P+
Sbjct: 181 NLQSPFS-SFYNNPILWPKLHPL 187

BLAST of CmoCh12G005570 vs. TAIR 10
Match: AT5G65790.1 (myb domain protein 68 )

HSP 1 Score: 236.1 bits (601), Expect = 3.8e-62
Identity = 111/146 (76.03%), Postives = 119/146 (81.51%), Query Frame = 0

Query: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWS EED KLK YIE  GTGGNWIALPQKIGL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQKIGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDNDI 120
           YLRPNIKHGGFSEEED IIC+LY++IGS               RWSIIAAQLPGRTDNDI
Sbjct: 61  YLRPNIKHGGFSEEEDNIICNLYVTIGS---------------RWSIIAAQLPGRTDNDI 120

Query: 121 KNYWNTRLKKKLFGKQRKDHHQQQQQ 147
           KNYWNTRLKKKL  KQRK+  + + +
Sbjct: 121 KNYWNTRLKKKLLNKQRKEFQEARMK 131

BLAST of CmoCh12G005570 vs. TAIR 10
Match: AT4G37780.1 (myb domain protein 87 )

HSP 1 Score: 229.2 bits (583), Expect = 4.7e-60
Identity = 108/151 (71.52%), Postives = 118/151 (78.15%), Query Frame = 0

Query: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDK  VKKGPWS EED  LKSYIE+HGTG NWI+LPQ+IG+KRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDNDI 120
           YLRPN+KHGGF++EED IICSLY++IGS               RWSIIA+QLPGRTDNDI
Sbjct: 61  YLRPNLKHGGFTDEEDYIICSLYITIGS---------------RWSIIASQLPGRTDNDI 120

Query: 121 KNYWNTRLKKKLFGKQRKDHHQQQQQATRRG 152
           KNYWNTRLKKKL  KQ K  HQQ      RG
Sbjct: 121 KNYWNTRLKKKLLSKQGKAFHQQLNVKFERG 136

BLAST of CmoCh12G005570 vs. TAIR 10
Match: AT2G36890.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 215.3 bits (547), Expect = 7.0e-56
Identity = 108/176 (61.36%), Postives = 119/176 (67.61%), Query Frame = 0

Query: 1   MGRAPCCDKANVKKGPWSAEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVK+GPWS EED KLK YIE+ GTGGNWIALP K GL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDRIICSLYLSIGSRFEKKKINSKGLVWNRWSIIAAQLPGRTDNDI 120
           YLRPNI+HG F+EEED II SL+ SIGS               RWS+IAA L GRTDNDI
Sbjct: 61  YLRPNIRHGDFTEEEDNIIYSLFASIGS---------------RWSVIAAHLQGRTDNDI 120

Query: 121 KNYWNTRLKKKLFGKQRKDHHQQQQQATRRGNALRHHGT-VNKSNSAIPYWPQQQQ 176
           KNYWNT+LKKKL        H     AT   +A     +  N  NS +PY P   Q
Sbjct: 121 KNYWNTKLKKKLIATMAPPPHHHLAIATSSSSASPSSSSHYNMINSLLPYNPSTNQ 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FKL22.2e-6261.58Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1[more]
Q9M2Y92.2e-6250.37Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1[more]
F4JSU06.6e-5971.52Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1[more]
Q9SJL79.8e-5561.36Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1[more]
Q9FG683.9e-5149.57Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1GJT21.2e-17595.24transcription factor RAX3-like OS=Cucurbita moschata OX=3662 GN=LOC111454503 PE=... [more]
A0A6J1KQX41.1e-16088.71transcription factor RAX3-like OS=Cucurbita maxima OX=3661 GN=LOC111496413 PE=4 ... [more]
A0A6J1K6548.2e-11366.27transcription factor RAX3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1HEB25.3e-11265.67transcription factor RAX3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1K8712.0e-11166.07transcription factor RAX3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
Match NameE-valueIdentityDescription
AT3G49690.11.6e-6350.37myb domain protein 84 [more]
AT5G57620.11.6e-6361.58myb domain protein 36 [more]
AT5G65790.13.8e-6276.03myb domain protein 68 [more]
AT4G37780.14.7e-6071.52myb domain protein 87 [more]
AT2G36890.17.0e-5661.36Duplicated homeodomain-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 13..64
e-value: 1.5E-12
score: 57.7
coord: 67..130
e-value: 2.0E-9
score: 47.3
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 9..62
score: 11.253823
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 63..128
score: 9.070692
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 71..128
e-value: 2.29732E-7
score: 44.8738
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 16..62
e-value: 1.64192E-9
score: 50.6518
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 70..126
e-value: 9.6E-7
score: 28.9
coord: 14..62
e-value: 4.6E-14
score: 52.3
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 9..66
score: 19.884815
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 103..132
score: 14.835508
NoneNo IPR availableGENE3D1.10.10.60coord: 7..68
e-value: 1.4E-18
score: 68.5
NoneNo IPR availableGENE3D1.10.10.60coord: 70..157
e-value: 2.6E-17
score: 64.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..155
NoneNo IPR availablePANTHERPTHR48000OS09G0431300 PROTEINcoord: 1..229
NoneNo IPR availablePANTHERPTHR48000:SF16TRANSCRIPTION FACTOR RAX3coord: 1..229
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 11..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G005570.1CmoCh12G005570.1mRNA