CmoCh12G005440 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G005440
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionFKBP-type peptidyl-prolyl cis-trans isomerase family protein
LocationCmo_Chr12: 3332812 .. 3333258 (-)
RNA-Seq ExpressionCmoCh12G005440
SyntenyCmoCh12G005440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCACCAAAGCGCACAATCGGAGCAAATTTATGCGATTCGTTACTCTACCCATCAGAGCTCTTGGCAAGGCCAAGGATTTGTATGTACGAAGCATCATGGATTGTGCTCCGAGAGTTAGCCATGGCTACCCATCTGGCCAAATGCCCGTCTTGCCCAAGAGTTACAGCTCGCGATCCTGCAGATCCAATGAAACCGATGATTTCAGGGAGCTTGTTAAGGCCGCTTCTGTTAGGAGTATGGACATTAAAGATGTCGACGCCGATGTTGTTTATCCACAGAGGGTGAGACAGTCCACGGGGCTGCCTAAGAGTTGCAGCGTTGGAATGGGTAGGATTGATGAAGATAGTGCTTGCGAGTTTGAAGGTGGCGTGGAGGAGAAGGGGGATTTGGTTTATCCAAGGAGTAGAAGCTACGCTGTGACGAGTACAAAATCTGGGGCTTGA

mRNA sequence

ATGAGCACCAAAGCGCACAATCGGAGCAAATTTATGCGATTCGTTACTCTACCCATCAGAGCTCTTGGCAAGGCCAAGGATTTGTATGTACGAAGCATCATGGATTGTGCTCCGAGAGTTAGCCATGGCTACCCATCTGGCCAAATGCCCGTCTTGCCCAAGAGTTACAGCTCGCGATCCTGCAGATCCAATGAAACCGATGATTTCAGGGAGCTTGTTAAGGCCGCTTCTGTTAGGAGTATGGACATTAAAGATGTCGACGCCGATGTTGTTTATCCACAGAGGGTGAGACAGTCCACGGGGCTGCCTAAGAGTTGCAGCGTTGGAATGGGTAGGATTGATGAAGATAGTGCTTGCGAGTTTGAAGGTGGCGTGGAGGAGAAGGGGGATTTGGTTTATCCAAGGAGTAGAAGCTACGCTGTGACGAGTACAAAATCTGGGGCTTGA

Coding sequence (CDS)

ATGAGCACCAAAGCGCACAATCGGAGCAAATTTATGCGATTCGTTACTCTACCCATCAGAGCTCTTGGCAAGGCCAAGGATTTGTATGTACGAAGCATCATGGATTGTGCTCCGAGAGTTAGCCATGGCTACCCATCTGGCCAAATGCCCGTCTTGCCCAAGAGTTACAGCTCGCGATCCTGCAGATCCAATGAAACCGATGATTTCAGGGAGCTTGTTAAGGCCGCTTCTGTTAGGAGTATGGACATTAAAGATGTCGACGCCGATGTTGTTTATCCACAGAGGGTGAGACAGTCCACGGGGCTGCCTAAGAGTTGCAGCGTTGGAATGGGTAGGATTGATGAAGATAGTGCTTGCGAGTTTGAAGGTGGCGTGGAGGAGAAGGGGGATTTGGTTTATCCAAGGAGTAGAAGCTACGCTGTGACGAGTACAAAATCTGGGGCTTGA

Protein sequence

MSTKAHNRSKFMRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRSCRSNETDDFRELVKAASVRSMDIKDVDADVVYPQRVRQSTGLPKSCSVGMGRIDEDSACEFEGGVEEKGDLVYPRSRSYAVTSTKSGA
Homology
BLAST of CmoCh12G005440 vs. ExPASy TrEMBL
Match: A0A6J1GH58 (uncharacterized protein LOC111454153 OS=Cucurbita moschata OX=3662 GN=LOC111454153 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.4e-77
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0

Query: 1   MSTKAHNRSKFMRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRS 60
           MSTKAHNRSKFMRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRS
Sbjct: 1   MSTKAHNRSKFMRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRS 60

Query: 61  CRSNETDDFRELVKAASVRSMDIKDVDADVVYPQRVRQSTGLPKSCSVGMGRIDEDSACE 120
           CRSNETDDFRELVKAASVRSMDIKDVDADVVYPQRVRQSTGLPKSCSVGMGRIDEDSACE
Sbjct: 61  CRSNETDDFRELVKAASVRSMDIKDVDADVVYPQRVRQSTGLPKSCSVGMGRIDEDSACE 120

Query: 121 FEGGVEEKGDLVYPRSRSYAVTSTKSGA 149
           FEGGVEEKGDLVYPRSRSYAVTSTKSGA
Sbjct: 121 FEGGVEEKGDLVYPRSRSYAVTSTKSGA 148

BLAST of CmoCh12G005440 vs. ExPASy TrEMBL
Match: A0A6J1KUQ7 (uncharacterized protein LOC111496579 OS=Cucurbita maxima OX=3661 GN=LOC111496579 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.4e-76
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0

Query: 1   MSTKAHNRSKFMRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRS 60
           MSTKAHNRSKFMRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRS
Sbjct: 1   MSTKAHNRSKFMRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRS 60

Query: 61  CRSNETDDFRELVKAASVRSMDIKDVDADVVYPQRVRQSTGLPKSCSVGMGRIDEDSACE 120
           CRSNETDDFRELVKAASVRSMDIKDVDADVVYPQRVRQS GLPKSCSVGMGRIDEDSACE
Sbjct: 61  CRSNETDDFRELVKAASVRSMDIKDVDADVVYPQRVRQSNGLPKSCSVGMGRIDEDSACE 120

Query: 121 FEGGVEEKGDLVYPRSRSYAVTSTKSGA 149
           FE GVEEKGDLVYPRSRSYAVTSTKSGA
Sbjct: 121 FEDGVEEKGDLVYPRSRSYAVTSTKSGA 148

BLAST of CmoCh12G005440 vs. ExPASy TrEMBL
Match: A0A1S3BAI0 (uncharacterized protein LOC103487823 OS=Cucumis melo OX=3656 GN=LOC103487823 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.0e-66
Identity = 123/144 (85.42%), Postives = 138/144 (95.83%), Query Frame = 0

Query: 4   KAHNRSKFMRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRSCRS 63
           KA N++KFMRFVTLPIRALGKAKD YV+SIMDCAPRVSHGYPSGQ+P+LPKSYSSRSCRS
Sbjct: 5   KAQNQNKFMRFVTLPIRALGKAKDFYVKSIMDCAPRVSHGYPSGQLPILPKSYSSRSCRS 64

Query: 64  NETDDFRELVKAASVRSMDIKDVDADVVYPQRVRQSTGLPKSCSVGMGRIDEDSACEFEG 123
           NETDDFRELVKAASVRS+DIKD+DAD++YPQR+RQS GLPKSCSVGMGRIDED+ACEFE 
Sbjct: 65  NETDDFRELVKAASVRSLDIKDIDADILYPQRLRQSKGLPKSCSVGMGRIDEDTACEFEE 124

Query: 124 GVEEKGDLVYPRSRSYAVTSTKSG 148
            VE+K DLVYPRS+SYAVT++KSG
Sbjct: 125 SVEDKADLVYPRSKSYAVTNSKSG 148

BLAST of CmoCh12G005440 vs. ExPASy TrEMBL
Match: A0A0A0LN74 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354110 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.6e-64
Identity = 122/148 (82.43%), Postives = 137/148 (92.57%), Query Frame = 0

Query: 1   MSTK-AHNRSKFMRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSR 60
           M TK A N++KF+RFVTLPIRALGKAKD YV+SIMDCAPRVSHGYPSGQ+P+LPKSYSSR
Sbjct: 1   MKTKNAQNQNKFIRFVTLPIRALGKAKDFYVKSIMDCAPRVSHGYPSGQLPILPKSYSSR 60

Query: 61  SCRSNETDDFRELVKAASVRSMDIKDVDADVVYPQRVRQSTGLPKSCSVGMGRIDEDSAC 120
           SCRSNETDDFRELVKAASVRS+DIKD+DAD++YPQR RQS GLPKSCSVGMGRIDED+AC
Sbjct: 61  SCRSNETDDFRELVKAASVRSLDIKDIDADILYPQRQRQSKGLPKSCSVGMGRIDEDTAC 120

Query: 121 EFEGGVEEKGDLVYPRSRSYAVTSTKSG 148
           EFE GVE+K  L YPRS+SYAVT++ SG
Sbjct: 121 EFEEGVEDKAHLAYPRSKSYAVTNSNSG 148

BLAST of CmoCh12G005440 vs. ExPASy TrEMBL
Match: A0A5A7UYI9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00970 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.2e-63
Identity = 118/136 (86.76%), Postives = 131/136 (96.32%), Query Frame = 0

Query: 12  MRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRSCRSNETDDFRE 71
           MRFVTLPIRALGKAKD YV+SIMDCAPRVSHGYPSGQ+P+LPKSYSSRSCRSNETDDFRE
Sbjct: 1   MRFVTLPIRALGKAKDFYVKSIMDCAPRVSHGYPSGQLPILPKSYSSRSCRSNETDDFRE 60

Query: 72  LVKAASVRSMDIKDVDADVVYPQRVRQSTGLPKSCSVGMGRIDEDSACEFEGGVEEKGDL 131
           LVKAASVRS+DIKD+DAD++YPQR+RQS GLPKSCSVGMGRIDED+ACEFE  VE+K DL
Sbjct: 61  LVKAASVRSLDIKDIDADILYPQRLRQSKGLPKSCSVGMGRIDEDTACEFEESVEDKADL 120

Query: 132 VYPRSRSYAVTSTKSG 148
           VYPRS+SYAVT++KSG
Sbjct: 121 VYPRSKSYAVTNSKSG 136

BLAST of CmoCh12G005440 vs. TAIR 10
Match: AT1G10140.1 (Uncharacterised conserved protein UCP031279 )

HSP 1 Score: 105.5 bits (262), Expect = 3.7e-23
Identity = 66/162 (40.74%), Postives = 95/162 (58.64%), Query Frame = 0

Query: 7   NRSKFMRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRSCRSNET 66
           N+SKF+R ++ P+RALGKA+D YVRSI  CA R  +   +      P+S SS S   + +
Sbjct: 4   NQSKFLRIISTPLRALGKARDFYVRSITGCAARTQYSSSASVSAPFPRSRSSSSAAFSSS 63

Query: 67  ------------DDFRELVKAASVRSMDIKDVDADVVYPQRVRQST-----GLPKSCSVG 126
                       +D+ ELV+AASVRS+  K+ + D++  ++++Q       GLPKS S G
Sbjct: 64  ASSRRTTDFGIDEDYSELVRAASVRSLGHKN-EIDMLIQEKLQQQKQQKQGGLPKSSSAG 123

Query: 127 MGRIDEDSACEFEGGVEEK-------GDLVYPRSRSYAVTST 145
           M RI+E+   E EG V  K        DL+YPRS+SYAVT++
Sbjct: 124 MARIEEEEETE-EGSVNPKVKKTKKVSDLLYPRSKSYAVTTS 163

BLAST of CmoCh12G005440 vs. TAIR 10
Match: AT1G58420.1 (Uncharacterised conserved protein UCP031279 )

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-18
Identity = 68/177 (38.42%), Postives = 98/177 (55.37%), Query Frame = 0

Query: 1   MSTKAHNRSKFMRFVTLPIRALGKAKDLYVRSIMDCAPRV--SHGYPSGQMPVLPKSYSS 60
           M  +   +++F+R VT+P++ L KA+DLY+RSI  CA R   S    +  +P  P+S S+
Sbjct: 1   MGKRGQKQNRFLRIVTMPLKVLCKARDLYMRSITGCAARTHYSSAVDAASVP-FPRSRST 60

Query: 61  RSCRSNET------------DDFRELVKAASVRSMDIKDVDADVVYPQRVRQST------ 120
            S  S+              DD+ EL++AASVRS+  K+ + D++  Q+ +Q        
Sbjct: 61  SSAFSSSASSRRRSSDFTFDDDYSELLRAASVRSLGHKN-EIDMIIQQQQQQQQQRQENR 120

Query: 121 ----------GLPKSCSVG--MGRIDEDSACEFEGGV--EEKG-DLVYPRSRSYAVT 143
                     GLPKS SVG  M RIDE+   E EG V  ++KG D +YPRSRS+AVT
Sbjct: 121 VAMGAVTVKGGLPKSSSVGMTMARIDEED--EEEGSVKNQKKGSDFLYPRSRSHAVT 173

BLAST of CmoCh12G005440 vs. TAIR 10
Match: AT4G37700.1 (unknown protein; Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 2.4e-06
Identity = 42/144 (29.17%), Postives = 74/144 (51.39%), Query Frame = 0

Query: 9   SKFMRFVTLPIRALGKAKDLYVRSIMDCAPR------VSHGYPSGQMPVLPKSYSSRSCR 68
           +K  +++ +PI+ L KA+D+Y+RS+   +        +S G P   +  LP+S+S+   +
Sbjct: 7   TKLSKYIKVPIKMLVKARDMYIRSMNQFSSHDLPGSGMSFGIPVCNVSTLPRSFSASHSQ 66

Query: 69  SN---ETDDFRELVKAASVRSMDIKDVDADVVYPQRVRQSTGLPKSCS--VGMGRIDEDS 128
            +   E D   +LV+AAS R+  I   D     P ++R++    +SC    G  +IDE S
Sbjct: 67  YSVRAEDDRVAKLVRAASARNATI---DGARHEPSKLRKAKS-SRSCGGHRGFEKIDEAS 126

Query: 129 ACEFEGGVEEKGDLVYPRSRSYAV 142
                G   +    ++ RS+SY+V
Sbjct: 127 PLISFGSKHK----MFQRSKSYSV 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GH583.4e-77100.00uncharacterized protein LOC111454153 OS=Cucurbita moschata OX=3662 GN=LOC1114541... [more]
A0A6J1KUQ78.4e-7698.65uncharacterized protein LOC111496579 OS=Cucurbita maxima OX=3661 GN=LOC111496579... [more]
A0A1S3BAI06.0e-6685.42uncharacterized protein LOC103487823 OS=Cucumis melo OX=3656 GN=LOC103487823 PE=... [more]
A0A0A0LN749.6e-6482.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354110 PE=4 SV=1[more]
A0A5A7UYI98.2e-6386.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
AT1G10140.13.7e-2340.74Uncharacterised conserved protein UCP031279 [more]
AT1G58420.13.5e-1838.42Uncharacterised conserved protein UCP031279 [more]
AT4G37700.12.4e-0629.17unknown protein; Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016972Uncharacterised conserved protein UCP031279PIRSFPIRSF031279UCP031279coord: 1..147
e-value: 1.4E-30
score: 104.4
NoneNo IPR availablePANTHERPTHR33526OS07G0123800 PROTEINcoord: 1..145
NoneNo IPR availablePANTHERPTHR33526:SF13BNAC09G15340D PROTEINcoord: 1..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G005440.1CmoCh12G005440.1mRNA