CmoCh12G005410 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G005410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	GATA type zinc finger transcription factor family protein
Location	Cmo_Chr12: 3299159 .. 3300630 (+)
RNA-Seq Expression	CmoCh12G005410
Synteny	CmoCh12G005410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCTTCATTTTTTCCTATTCTTCCAAACAAAGCTCATTTCTTTCACTGAAGCCTCCACAGAGAAGAAGAAACCTTCACTGCAAGACAATGGCATTTGCAGGCACAACCCAGAAGTGTATGGCTTGTGAAAAGACCGTCTATCTCGTCGACAAGTTGACCGCTGATAACCGTGTCTACCACAAAGCCTGCTTCAGATGTCACCATTGCAAAGGAACTCTCAAGGTAAGACCACCACTGGTTTTTGTTCTTCTTATTTGTCTGTAGCTAATGAAGGAGCTGGAACTTAAACTGAAGTTGTTCATCGGTTTTCAGCTCAGCAACTACAATTCCTTTGAAGGGGTCCTTTACTGCAGGCCACACTTTGATCAGATCTTTAAGAGGACTGGTAGTCTTGACAAAAGCTTTGAAGGTACAAAATTCTTGTTTGAATGGAACTGATTCTTCAGGTTCTTCAGGTTTCGATGCTAATTCTCTGTCGGATCTGTCTTTTTCGTGTTTTTAGGGACACCCAAGATCGTAAAACCAGAGAAACCGATCGATGGCGAGGTAATTCCCTTGAGCTTGTTACCTGAAGAATTTATTATATCTTTCCCATTAATCTAAAAAACGTATCAACAGAAACGGGCAGCGAGCAAGGTTGCTAACATGTTCGGTGGAACAAGAGATAAATGTCTTGGCTGTAATAACACCGTCTTTCCAATAGAAAAGGTAACGACAAGACCCGAGTTTTTCTTCTTCCTCCTTTCGTTTCATTAACTCAATCAGCAAATCCAACCTCTGTCAATGGTTTCTGTTTCAAGGTTACTGTGAATGGAATTCCATACCATAAAACTTGCTTCAAATGCTGTCATGGAGGATGCACGATCAGTCCTTCAAACTACATCGCTCACGAGGGGCGACTTTACTGCAAGCACCACCATATCCAACTGATCAAGGAGAAAGGAAACTTGAGTCAGCTTGAAGGAGACCATGAAAAGATAACAAGGGAGAAAATCAATGGTGGAGAGGTGGCTTCTGAGGCCTGATCTGCACAATCTAGCTTTCTCTTATAGCTATCAGATCAGACAAGATACCCTTATATCCTCCTCTGCAACCCTCAAGAGTCTTTTAAGGCTATGCACTAAGAAAAATACAAGCATCAGTTGTGTTTCCTGTTAAAAGTGTGTTTTTTGGCCTCTCTGTTTCTTATATATTCAAATAACATGCTCAAACAGATGCCAAGATCTGTTTGATTTTCACCATCTTTCATACTGAAAAAGAGTGGCATGTTTATGAATCTGAATCGTCTTCCTGTCAATTCCAAGGGATGCTCATAATTATATGACATGAACCAAGACATCAATCATGTAATATAAACTTCAAGGAAAATGGGAAGAACACGTTGTCAAGATTATCAAAAGATGCTTCAATTCATGCCCCATTGAAGAAGAATCAAGTTTCATTGTTATAAATTTTGGGTGGATCATAATTT

mRNA sequence

TTGCTTCATTTTTTCCTATTCTTCCAAACAAAGCTCATTTCTTTCACTGAAGCCTCCACAGAGAAGAAGAAACCTTCACTGCAAGACAATGGCATTTGCAGGCACAACCCAGAAGTGTATGGCTTGTGAAAAGACCGTCTATCTCGTCGACAAGTTGACCGCTGATAACCGTGTCTACCACAAAGCCTGCTTCAGATGTCACCATTGCAAAGGAACTCTCAAGCTCAGCAACTACAATTCCTTTGAAGGGGTCCTTTACTGCAGGCCACACTTTGATCAGATCTTTAAGAGGACTGGTAGTCTTGACAAAAGCTTTGAAGGGACACCCAAGATCGTAAAACCAGAGAAACCGATCGATGGCGAGAAACGGGCAGCGAGCAAGGTTGCTAACATGTTCGGTGGAACAAGAGATAAATGTCTTGGCTGTAATAACACCGTCTTTCCAATAGAAAAGGTTACTGTGAATGGAATTCCATACCATAAAACTTGCTTCAAATGCTGTCATGGAGGATGCACGATCAGTCCTTCAAACTACATCGCTCACGAGGGGCGACTTTACTGCAAGCACCACCATATCCAACTGATCAAGGAGAAAGGAAACTTGAGTCAGCTTGAAGGAGACCATGAAAAGATAACAAGGGAGAAAATCAATGGTGGAGAGGTGGCTTCTGAGGCCTGATCTGCACAATCTAGCTTTCTCTTATAGCTATCAGATCAGACAAGATACCCTTATATCCTCCTCTGCAACCCTCAAGAGTCTTTTAAGGCTATGCACTAAGAAAAATACAAGCATCAGTTGTGTTTCCTGTTAAAAGTGTGTTTTTTGGCCTCTCTGTTTCTTATATATTCAAATAACATGCTCAAACAGATGCCAAGATCTGTTTGATTTTCACCATCTTTCATACTGAAAAAGAGTGGCATGTTTATGAATCTGAATCGTCTTCCTGTCAATTCCAAGGGATGCTCATAATTATATGACATGAACCAAGACATCAATCATGTAATATAAACTTCAAGGAAAATGGGAAGAACACGTTGTCAAGATTATCAAAAGATGCTTCAATTCATGCCCCATTGAAGAAGAATCAAGTTTCATTGTTATAAATTTTGGGTGGATCATAATTT

Coding sequence (CDS)

ATGGCATTTGCAGGCACAACCCAGAAGTGTATGGCTTGTGAAAAGACCGTCTATCTCGTCGACAAGTTGACCGCTGATAACCGTGTCTACCACAAAGCCTGCTTCAGATGTCACCATTGCAAAGGAACTCTCAAGCTCAGCAACTACAATTCCTTTGAAGGGGTCCTTTACTGCAGGCCACACTTTGATCAGATCTTTAAGAGGACTGGTAGTCTTGACAAAAGCTTTGAAGGGACACCCAAGATCGTAAAACCAGAGAAACCGATCGATGGCGAGAAACGGGCAGCGAGCAAGGTTGCTAACATGTTCGGTGGAACAAGAGATAAATGTCTTGGCTGTAATAACACCGTCTTTCCAATAGAAAAGGTTACTGTGAATGGAATTCCATACCATAAAACTTGCTTCAAATGCTGTCATGGAGGATGCACGATCAGTCCTTCAAACTACATCGCTCACGAGGGGCGACTTTACTGCAAGCACCACCATATCCAACTGATCAAGGAGAAAGGAAACTTGAGTCAGCTTGAAGGAGACCATGAAAAGATAACAAGGGAGAAAATCAATGGTGGAGAGGTGGCTTCTGAGGCCTGA

Protein sequence

MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPIEKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHEKITREKINGGEVASEA

Homology

[Close]

BLAST of CmoCh12G005410 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.2e-95
Identity = 155/187 (82.89%), Postives = 174/187 (93.05%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMAC+KTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI 120
           HFDQ FKRTGSL+KSFEGTPKI KP++P++GE+ A +KV+NMFGGTR+KC+GC+ TV+PI
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKV+VNG  YHK+CFKC HGGCTISPSNYIAHEG+LYCKHHHIQLIKEKGNLSQLEG  E
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGGGE 180

Query: 181 KITREKI 188
              ++K+
Sbjct: 181 NAAKDKV 187

[Close]

BLAST of CmoCh12G005410 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 5.7e-77
Identity = 126/175 (72.00%), Postives = 147/175 (84.00%), Query Frame = 0


Query: 2   AFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61
           +F GTTQKC  CEKTVYLVDKL A+ RVYHKACFRCHHC  TLKLSN+NSF+GV+YCR H
Sbjct: 3   SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHH 62

Query: 62  FDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPIE 121
           FDQ+FKRTGSL+KSF+GTPK  KPE+    E ++A+++++ F GTRDKC  C   V+PIE
Sbjct: 63  FDQLFKRTGSLEKSFDGTPKF-KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIE 122

Query: 122 KVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLE 177
           +V V+G  YH+ CFKCCHGGCTISPSNYIAHEGRLYCKHHHIQL K+KGN SQLE
Sbjct: 123 RVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLE 176

[Close]

BLAST of CmoCh12G005410 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.2e-60
Identity = 106/175 (60.57%), Postives = 127/175 (72.57%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC ACEKTVY V+ L+AD   YHKACF+C HCK  L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI 120
           HF+Q+FK +GS  K+F+   K +  +KP     R  S++A MF GT+DKC  C  TV+PI
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPL-TDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           EKVTV    YHK+CFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]

BLAST of CmoCh12G005410 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.9e-58
Identity = 102/175 (58.29%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC ACEKTVY V+ L+AD   YHK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI 120
           HF+Q+FK +GS +K+F+   K    +K      R  S+VA  F GT++KC  C+ TV+PI
Sbjct: 61  HFEQLFKESGSFNKNFQSPAK--SADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPI 120

Query: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           EKVTV    YHK+CFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of CmoCh12G005410 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 5.2e-54
Identity = 95/190 (50.00%), Postives = 127/190 (66.84%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT  KC AC+KTVY++D LT +   YHK+CFRC HCKGTL +SNY+S +GVLYC+P
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI 120
           HF+Q+FK +G+  K+F+      K EKP D   R  SK+++ F GT+DKC  C  TV+P+
Sbjct: 61  HFEQLFKESGNYSKNFQAG----KTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPL 120

Query: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVT+ G  YHKTCF+C H GC ++ S+Y +  G LYCK H  QL  EKG+ + +     
Sbjct: 121 EKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAA 180

Query: 181 KITREKINGG 191
              R   +GG
Sbjct: 181 NHRRSASSGG 186

[Close]

BLAST of CmoCh12G005410 vs. ExPASy TrEMBL
Match: A0A6J1GH23 (LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111454152 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 4.2e-115
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI 120
           HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI
Sbjct: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI 120

Query: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE
Sbjct: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180

Query: 181 KITREKINGGEVASEA 197
           KITREKINGGEVASEA
Sbjct: 181 KITREKINGGEVASEA 196

[Close]

BLAST of CmoCh12G005410 vs. ExPASy TrEMBL
Match: A0A6J1KQZ1 (LIM domain-containing protein WLIM1 OS=Cucurbita maxima OX=3661 GN=LOC111496423 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 1.6e-114
Identity = 195/196 (99.49%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI 120
           HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGC+NTVFPI
Sbjct: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCHNTVFPI 120

Query: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE
Sbjct: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180

Query: 181 KITREKINGGEVASEA 197
           KITREKINGGEVASEA
Sbjct: 181 KITREKINGGEVASEA 196

[Close]

BLAST of CmoCh12G005410 vs. ExPASy TrEMBL
Match: A0A6J1BT53 (LIM domain-containing protein WLIM1-like OS=Momordica charantia OX=3673 GN=LOC111004606 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 3.4e-109
Identity = 186/197 (94.42%), Postives = 192/197 (97.46%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACEKTVYLVDKLTADNR+YHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI 120
           HFDQ+FKRTGSLDKSFEGTPKIVKPEKPIDGEK  A+KVA+MFGGTRDKCLGCNNTV+P 
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPIDGEKPTANKVASMFGGTRDKCLGCNNTVYPT 120

Query: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVTVNG PYHK+CFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE
Sbjct: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180

Query: 181 KIT-REKINGGEVASEA 197
           KIT REKINGGEVASEA
Sbjct: 181 KITAREKINGGEVASEA 197

[Close]

BLAST of CmoCh12G005410 vs. ExPASy TrEMBL
Match: A0A1S3BBD7 (LIM domain-containing protein WLIM1 OS=Cucumis melo OX=3656 GN=LOC103487830 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 5.5e-107
Identity = 185/198 (93.43%), Postives = 192/198 (96.97%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACEKTVYLVDKLTADNR+YHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI 120
           HFDQIFKRTGSLDKSFEGTPKIVKPEKPID EK  A+KVA+MFGGTRDKCLGC+NTV+P 
Sbjct: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDSEKPTANKVASMFGGTRDKCLGCDNTVYPT 120

Query: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVTVNGIPYHK+CFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE
Sbjct: 121 EKVTVNGIPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180

Query: 181 KIT-REKINGGE-VASEA 197
           KIT +EKINGGE VASEA
Sbjct: 181 KITAKEKINGGEVVASEA 198

[Close]

BLAST of CmoCh12G005410 vs. ExPASy TrEMBL
Match: A0A6J1K7W9 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111492481 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 7.9e-106
Identity = 180/197 (91.37%), Postives = 188/197 (95.43%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACEKTVYLVDKLTADNR+YHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI 120
           HFDQ+FKRTGSLDKSFEGTPKIVKPEKP+D EK  A KVA+MFGGTRDKCLGCNNTV+P 
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIVKPEKPVDSEKPTAKKVASMFGGTRDKCLGCNNTVYPT 120

Query: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKVTVNG PYHK+CFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE
Sbjct: 121 EKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180

Query: 181 KI-TREKINGGEVASEA 197
           KI ++EKING  VASEA
Sbjct: 181 KIPSKEKINGEAVASEA 197

[Close]

BLAST of CmoCh12G005410 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 350.5 bits (898), Expect = 8.6e-97
Identity = 155/187 (82.89%), Postives = 174/187 (93.05%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMAC+KTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI 120
           HFDQ FKRTGSL+KSFEGTPKI KP++P++GE+ A +KV+NMFGGTR+KC+GC+ TV+PI
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHE 180
           EKV+VNG  YHK+CFKC HGGCTISPSNYIAHEG+LYCKHHHIQLIKEKGNLSQLEG  E
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGGGE 180

Query: 181 KITREKI 188
              ++K+
Sbjct: 181 NAAKDKV 187

[Close]

BLAST of CmoCh12G005410 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-61
Identity = 106/175 (60.57%), Postives = 127/175 (72.57%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC ACEKTVY V+ L+AD   YHKACF+C HCK  L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI 120
           HF+Q+FK +GS  K+F+   K +  +KP     R  S++A MF GT+DKC  C  TV+PI
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPL-TDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           EKVTV    YHK+CFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]

BLAST of CmoCh12G005410 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 225.3 bits (573), Expect = 4.2e-59
Identity = 102/175 (58.29%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC ACEKTVY V+ L+AD   YHK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI 120
           HF+Q+FK +GS +K+F+   K    +K      R  S+VA  F GT++KC  C+ TV+PI
Sbjct: 61  HFEQLFKESGSFNKNFQSPAK--SADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPI 120

Query: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           EKVTV    YHK+CFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of CmoCh12G005410 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 225.3 bits (573), Expect = 4.2e-59
Identity = 102/175 (58.29%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC ACEKTVY V+ L+AD   YHK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI 120
           HF+Q+FK +GS +K+F+   K    +K      R  S+VA  F GT++KC  C+ TV+PI
Sbjct: 61  HFEQLFKESGSFNKNFQSPAK--SADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPI 120

Query: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           EKVTV    YHK+CFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of CmoCh12G005410 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 225.3 bits (573), Expect = 4.2e-59
Identity = 102/175 (58.29%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC ACEKTVY V+ L+AD   YHK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQIFKRTGSLDKSFEGTPKIVKPEKPIDGEKRAASKVANMFGGTRDKCLGCNNTVFPI 120
           HF+Q+FK +GS +K+F+   K    +K      R  S+VA  F GT++KC  C+ TV+PI
Sbjct: 61  HFEQLFKESGSFNKNFQSPAK--SADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPI 120

Query: 121 EKVTVNGIPYHKTCFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQL 176
           EKVTV    YHK+CFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

The following BLAST results are available for this feature:

BLAST of CmoCh12G005410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	1.2e-95	82.89	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	5.7e-77	72.00	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
O04193	2.2e-60	60.57	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	5.9e-58	58.29	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O80839	5.2e-54	50.00	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]

BLAST of CmoCh12G005410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GH23	4.2e-115	100.00	LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KQZ1	1.6e-114	99.49	LIM domain-containing protein WLIM1 OS=Cucurbita maxima OX=3661 GN=LOC111496423 ...	[more]
A0A6J1BT53	3.4e-109	94.42	LIM domain-containing protein WLIM1-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S3BBD7	5.5e-107	93.43	LIM domain-containing protein WLIM1 OS=Cucumis melo OX=3656 GN=LOC103487830 PE=4...	[more]
A0A6J1K7W9	7.9e-106	91.37	LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]

BLAST of CmoCh12G005410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10200.1	8.6e-97	82.89	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	1.5e-61	60.57	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	4.2e-59	58.29	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	4.2e-59	58.29	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	4.2e-59	58.29	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 109..161 e-value: 1.3E-10 score: 51.3 coord: 9..61 e-value: 1.2E-10 score: 51.4
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 110..164 e-value: 2.0E-10 score: 40.7 coord: 10..63 e-value: 4.1E-10 score: 39.7
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.0879
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 108..168 score: 11.8306
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 4..74 e-value: 5.4E-19 score: 70.1 coord: 105..174 e-value: 1.6E-16 score: 62.2
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..185
None	No IPR available	PANTHER	PTHR24206:SF92	GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 1..185
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 7.92234E-41 score: 131.048
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 110..170 e-value: 6.3119E-37 score: 121.038
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 102..135
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 136..175
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G005410.1	CmoCh12G005410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding