CmoCh12G005060 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G005060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ethylene-responsive transcription factor RAP2-1
Location	Cmo_Chr12: 3117285 .. 3118663 (-)
RNA-Seq Expression	CmoCh12G005060
Synteny	CmoCh12G005060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTGTTGTCATTTAATAGTTGTTTCAAGGTTAGAATCATGATTTTCTTGTACCCTTTTATGTTTATTCTGCCGGGGTTAGGAGTTTAGCAGGATCAATAATCATCTTGTTACATCCACTTTAACTGTTGTTGTTGCTTGGGGAGGGGGGAGAATAATTTATCATCTTGTTTGCTTGTTAGGATTTTTTGCTATAGGCTGATATTCTTCCTTCAATTGCTTCGGTAGTTACAGAAGAACCTTGTAGATTTTCTGACTGTTTCATAATTCATTTTGAAGTCTCAATATTCTGGTTTCTGCATAGTTGGATGGTTCATGTTGTGACTAGATACTGTAATTGTTGATCATTATATTTGGAATATTTAGATTGTTGTTATAATCTATATATGAAGCTATTTCATTCAAATTTATGTAACAAAGTATACCATATGTAAGTTGTAATCCCACTTGTTTTGTGCTCGAACAATGGCTTATAATGAATGAAATTATATGATATGATTCTTCTCATCATACAAAAAATAGTAACCCATTATTCATCTCTCTCAATATGGTAACATCTTTGGGTTCCTTGTTGGCCCTGTTGGTATTTTTTTGGTATTTGTTTGATTACTGGGAGGATCAGGGTTTATACGTAAGAAATACATCTATATGTGTAGGATGTCTTTTGGGGAAGCCCAAAGTAAAGACATAGAGCTTATGCTCAAAGTGGACAATGTCATACCATTGTGGAGAGTCGTAGTTTCTAACATCCACGACTCATGCTGGTCGGTTACCATTTAATATCATCGTACGTTCCTCTATGAAATGGCGAGGCCTCCCGTCCTTGTCCCAGTCTAACCCCTTTTGAGTCTTCTCTTTCTGGTCTTTTTGGTCTTTTCATTTTTGCTATGGGATTTACGCAATGAATTCAATACAGTCGATGTTGTTGTAACGACCCAGATTCACCGCTAGCAGATATTGTTCTCTTTGGGCTTTCCCTTTCAGGCTTCCTCTCAAGGCTTTAAAACGTGTATGCTAGGAGAAGGTTTCCACACCCTTATAAAGAGTCTTTTGTTCTCATCCCAACCAATGTGGGACATCACAGTTGTACTATGAATGAAGCGGGAGACTCCATGAGTGCTGCCAGAGCCTACGACATGGTGGTGTTTTACCTGAGAGGACCATCCGCCCGCCGTAACTTCCCGGACCTGATCTTACAGGACATGAATCACCAGCTGCTTGATTTTCCCTCTTCTTAAATACGCAGAAGAGCTATTGAGGTCGGTGCTAGAGTCGACGCTGCTGCCCACCATGCTTCTCAACGCCAATCCAAACCCATTTCCGACAAGCCTGATTTGAACCAGTTTCCGGACCTGGAAAGCTCCGACGAAGCTTGA

mRNA sequence

ATGTTTCTGTTGTCATTTAATAGTTGTTTCAAGGTTAGAATCATGATTTTCTTGTACCCTTTTATGTTTATTCTGCCGGGAAGAGCTATTGAGGTCGGTGCTAGAGTCGACGCTGCTGCCCACCATGCTTCTCAACGCCAATCCAAACCCATTTCCGACAAGCCTGATTTGAACCAGTTTCCGGACCTGGAAAGCTCCGACGAAGCTTGA

Coding sequence (CDS)

ATGTTTCTGTTGTCATTTAATAGTTGTTTCAAGGTTAGAATCATGATTTTCTTGTACCCTTTTATGTTTATTCTGCCGGGAAGAGCTATTGAGGTCGGTGCTAGAGTCGACGCTGCTGCCCACCATGCTTCTCAACGCCAATCCAAACCCATTTCCGACAAGCCTGATTTGAACCAGTTTCCGGACCTGGAAAGCTCCGACGAAGCTTGA

Protein sequence

MFLLSFNSCFKVRIMIFLYPFMFILPGRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDEA

Homology

[Close]

BLAST of CmoCh12G005060 vs. ExPASy TrEMBL
Match: A0A5A7V5C8 (Ethylene-responsive transcription factor RAP2-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00520 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.3e-10
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 28  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE 69
           RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPD ESSDE
Sbjct: 101 RAIEVGARVDAAAHQTSLRQSKPISDKPDLNQFPDPESSDE 141

[Close]

BLAST of CmoCh12G005060 vs. ExPASy TrEMBL
Match: A0A1S3BAR1 (ethylene-responsive transcription factor RAP2-1 OS=Cucumis melo OX=3656 GN=LOC103487870 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.3e-10
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 28  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE 69
           RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPD ESSDE
Sbjct: 101 RAIEVGARVDAAAHQTSLRQSKPISDKPDLNQFPDPESSDE 141

[Close]

BLAST of CmoCh12G005060 vs. ExPASy TrEMBL
Match: A0A0A0LR87 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G356600 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.4e-09
Identity = 36/41 (87.80%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 28  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE 69
           RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPD ESS E
Sbjct: 101 RAIEVGARVDAAAHQTSLRQSKPISDKPDLNQFPDPESSGE 141

[Close]

BLAST of CmoCh12G005060 vs. ExPASy TrEMBL
Match: A0A6J1KB24 (ethylene-responsive transcription factor RAP2-1-like OS=Cucurbita maxima OX=3661 GN=LOC111492253 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.6e-08
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 28  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE 69
           RAIEVGARVDAAA+  S RQSKPIS+KPDLNQFP+ ESSDE
Sbjct: 102 RAIEVGARVDAAANRTSLRQSKPISEKPDLNQFPEPESSDE 142

[Close]

BLAST of CmoCh12G005060 vs. ExPASy TrEMBL
Match: A0A6J1HCJ9 (ethylene-responsive transcription factor RAP2-1-like OS=Cucurbita moschata OX=3662 GN=LOC111462838 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.6e-08
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 28  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE 69
           RAIEVGARVDAAA+  S RQSKPIS+KPDLNQFP+ ESSDE
Sbjct: 102 RAIEVGARVDAAANRTSLRQSKPISEKPDLNQFPEPESSDE 142

The following BLAST results are available for this feature:

BLAST of CmoCh12G005060 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh12G005060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5C8	8.3e-10	90.24	Ethylene-responsive transcription factor RAP2-1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BAR1	8.3e-10	90.24	ethylene-responsive transcription factor RAP2-1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LR87	5.4e-09	87.80	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G356600 PE=...	[more]
A0A6J1KB24	4.6e-08	82.93	ethylene-responsive transcription factor RAP2-1-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1HCJ9	4.6e-08	82.93	ethylene-responsive transcription factor RAP2-1-like OS=Cucurbita moschata OX=36...	[more]

BLAST of CmoCh12G005060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G005060.1	CmoCh12G005060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity