CmoCh12G004210 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G004210
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionChloroplast thylakoid membrane
LocationCmo_Chr12: 2583901 .. 2584014 (-)
RNA-Seq ExpressionCmoCh12G004210
SyntenyCmoCh12G004210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATGTTCGAAGAATGCTCATGTCTGTTGCAAGGCATTGCGTTTTGAAGGACAGGAATTCCTTTGTTCAATTTCAAGCAAGCACAGGAGTCGAGGTTCTATCTTCCTAA

mRNA sequence

ATGGAGAATGTTCGAAGAATGCTCATGTCTGTTGCAAGGCATTGCGTTTTGAAGGACAGGAATTCCTTTGTTCAATTTCAAGCAAGCACAGGAGTCGAGGTTCTATCTTCCTAA

Coding sequence (CDS)

ATGGAGAATGTTCGAAGAATGCTCATGTCTGTTGCAAGGCATTGCGTTTTGAAGGACAGGAATTCCTTTGTTCAATTTCAAGCAAGCACAGGAGTCGAGGTTCTATCTTCCTAA

Protein sequence

MENVRRMLMSVARHCVLKDRNSFVQFQASTGVEVLSS
Homology
[Close]
BLAST of CmoCh12G004210 vs. ExPASy TrEMBL
Match: A0A6J1K9U3 (uncharacterized protein LOC111492399 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492399 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV 35
           ME+V+RML S AR CVLKDRNSFVQFQASTGVEV
Sbjct: 118 MEDVQRMLKSAARDCVLKDRNSFVQFQASTGVEV 151

[Close]
BLAST of CmoCh12G004210 vs. ExPASy TrEMBL
Match: A0A6J1K7N2 (uncharacterized protein LOC111492399 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492399 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV 35
           ME+V+RML S AR CVLKDRNSFVQFQASTGVEV
Sbjct: 118 MEDVQRMLKSAARDCVLKDRNSFVQFQASTGVEV 151

[Close]
BLAST of CmoCh12G004210 vs. ExPASy TrEMBL
Match: A0A6J1HBA0 (uncharacterized protein LOC111462505 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462505 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV 35
           ME+V+RML S AR CVLKDRNSFVQFQASTGVEV
Sbjct: 118 MEDVQRMLKSAARDCVLKDRNSFVQFQASTGVEV 151

[Close]
BLAST of CmoCh12G004210 vs. ExPASy TrEMBL
Match: A0A6J1HBI9 (uncharacterized protein LOC111462505 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462505 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV 35
           ME+V+RML S AR CVLKDRNSFVQFQASTGVEV
Sbjct: 118 MEDVQRMLKSAARDCVLKDRNSFVQFQASTGVEV 151

[Close]
BLAST of CmoCh12G004210 vs. ExPASy TrEMBL
Match: A0A0A0LPA8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361670 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-05
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV 35
           ME+V+R+L S AR CVLKDRNSFVQFQASTGVEV
Sbjct: 118 MEDVQRLLKSAARDCVLKDRNSFVQFQASTGVEV 151

The following BLAST results are available for this feature:
BLAST of CmoCh12G004210 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh12G004210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K9U35.1e-0685.29uncharacterized protein LOC111492399 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1K7N25.1e-0685.29uncharacterized protein LOC111492399 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HBA05.1e-0685.29uncharacterized protein LOC111462505 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1HBI95.1e-0685.29uncharacterized protein LOC111462505 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A0A0LPA81.1e-0582.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361670 PE=4 SV=1[more]
BLAST of CmoCh12G004210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G004210.1CmoCh12G004210.1mRNA