CmoCh12G004040 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G004040
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionSm protein F
LocationCmo_Chr12: 2516505 .. 2518640 (-)
RNA-Seq ExpressionCmoCh12G004040
SyntenyCmoCh12G004040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGACTCAACGAAAGGGAAAAGGGGAGGGAAAACAAACCCTAGAGAGAAAGAGCGCCATTTTCTTCGTCTCCTCGTTCTTTTGAGCCTCCGTTGATCCCAGAGAAGCGCTTGCAGATCATTCGGAACCATGGTAAGCAAGATTTTTCGTTTTCATCGCTTTTTCAGCTAGTGTTTATGTGTTATTGTTGTTTTTTAACTATGGATCAAGTGTTAATTTATCGTTATGTAGAATCAGATAGCACCAGAGATTCTTTGTTGTTTAAGATTTTCCCCTGATTTTTCTTTGATTTGTAAATCCTGCTGAATTCTTTACATGATTGTTTGGGCATTGTAGAGTATTCCAGTTAACCCGAAACCGTTCTTGAACAATTTGACTGGAAAGACTGTTGTTGTGAAACTGAAGTGGGGGATGGAGTACAAAGGTTTGCTTCTACCTGCTGCTTGTTTTTCTTATTTTTCTTATTTTTCTTATTTTCTTGCCTGCTGTTGTTTATACTGAGTTTCGTTTCCATTTCAGGCTTTCTGGTCTCTGTAGACTCGTACATGAACTTACAGGTTTGTTTCTACTTGTATTGTTTCTACTCGTACATGAACTTGCAGGTTTGTTTCTACAGGTTTTTTTAAAAGATTTTGATCGTCTCTTTGTTGTTTCTACTTATTGCAATCGTCCTTTTAATTGAACCATTCAAACTTACCACTGACTGATTCAAAGTCCTTCATATTTGAATTTAACTTGATTTGTTCTGTTTGTCATTTTCTGATTATGTAGTTTGGAAACGAAACTATCCATTTTGTTTTTATAATTGTTTATACGAAATGCGATGGAGTAATTCGGCAGTGTTAATCATTGAAATTGATTTGCAACTGTTAGATTTTGAAAGGAAGAACAACAAATTAAATGATACGAAAGGAAAACTAATTCTTCTCTGAATTTTTGTTTTTAAAAACAGAAAACTACTTATGAACGTATTTCTCAATTGAGCCCATAGTCTCTTTCAGTGGCTGATTCCTGTATACAACTTTTTAAATGCAGCTTGCCAACACCGAGGAATATATTGATGGACAATGTACTGGGAGTCTCGGAGAAATATTGATCAGGTAACCTTCTTTCAGTGTTGGCACATTGCAATATCAAGTGCATCAATGCTTATTTGTAGTTAGTAATGCATGTGTACTGTCCATAATATATATGCTCAAGCACAAATGTTAGGAAAAACACAGATACAACCAAAATGGCATGTTTCTTTCAAAATCACTCCTAAACATGTCCAAAGTGATAAGAAATCCAATTTCCGCTCAAATAGGCTTGTGAAAGAGTCGAATAAAGGAGAAACATAATGAATTGTGAATCGATAATGAAAGGATAGGTAATTAAAGAGGCCAACGAGCCTTTTTTAGGGTTTTGGGGGTAGAGGGACTTGAGCCCTCATGATTTTTAAAGTCGATGGATTTTCCTCTTACTATAAATTTCATTTTAGTTGGTATTGACATGAAGAATAAAGTTGTATGCACGCGTTTATTTTTTGAGGTCTAGTAAGGATATGGCCGTTGTCGTTGTCTTTCAAGTTTGACACTTTGGTGCCTACCGATAAATTCTTCTGCAAGTTCCAAGTTTCTAACATCAAACACGGGCAATATTCGTGCTTTTTCCTGGCAGGTGTAATAATGTTCTTTACCTTCGCGGAGTACCAGAGGACGAAGAGCTTGAAGATGCTGAGCGCGACTAACATGTAAATTTGTAGCAGCCAGCTCTGCCATGCCATAGTAGCAGCTAAGTTTTCAGCCTTCTAGTTTCCTAGTTTTCCTTTCATCTGCTGCTTAAGTTGCATCTTGTTGCTATTGGTACTACCTTATAGGACACGATCATTCTCTGCTTTTAGTCGATTTCGAACCTGCACGATCATTCTAGGGAGATTGAATGGTAGAAAAGGAATTCATGAATGTAACATCTTTGTCTTTATAGCATTGAAATGCTTCATTTTTTCAACATAAGATAAGCTAGAGCGTTACATAAATCTTTCATGTGGAATGCAATGCAATGACATATATTTGTAATATCATTAGCTTTGAGTTTTGGATAAAATCTGTATCCATTGTTATTTATTATATTACAATTGATTTTTAGATTGGAGCTCA

mRNA sequence

AGACTCAACGAAAGGGAAAAGGGGAGGGAAAACAAACCCTAGAGAGAAAGAGCGCCATTTTCTTCGTCTCCTCGTTCTTTTGAGCCTCCGTTGATCCCAGAGAAGCGCTTGCAGATCATTCGGAACCATGAGTATTCCAGTTAACCCGAAACCGTTCTTGAACAATTTGACTGGAAAGACTGTTGTTGTGAAACTGAAGTGGGGGATGGAGTACAAAGGCTTTCTGGTCTCTGTAGACTCGTACATGAACTTACAGGTTTGTTTCTACTTGTATTGTTTCTACTCGTACATGAACTTGCAGCTTGCCAACACCGAGGAATATATTGATGGACAATGTACTGGGAGTCTCGGAGAAATATTGATCAGGTGTAATAATGTTCTTTACCTTCGCGGAGTACCAGAGGACGAAGAGCTTGAAGATGCTGAGCGCGACTAACATGTAAATTTGTAGCAGCCAGCTCTGCCATGCCATAGTAGCAGCTAAGTTTTCAGCCTTCTAGTTTCCTAGTTTTCCTTTCATCTGCTGCTTAAGTTGCATCTTGTTGCTATTGGTACTACCTTATAGGACACGATCATTCTCTGCTTTTAGTCGATTTCGAACCTGCACGATCATTCTAGGGAGATTGAATGGTAGAAAAGGAATTCATGAATGTAACATCTTTGTCTTTATAGCATTGAAATGCTTCATTTTTTCAACATAAGATAAGCTAGAGCGTTACATAAATCTTTCATGTGGAATGCAATGCAATGACATATATTTGTAATATCATTAGCTTTGAGTTTTGGATAAAATCTGTATCCATTGTTATTTATTATATTACAATTGATTTTTAGATTGGAGCTCA

Coding sequence (CDS)

ATGAGTATTCCAGTTAACCCGAAACCGTTCTTGAACAATTTGACTGGAAAGACTGTTGTTGTGAAACTGAAGTGGGGGATGGAGTACAAAGGCTTTCTGGTCTCTGTAGACTCGTACATGAACTTACAGGTTTGTTTCTACTTGTATTGTTTCTACTCGTACATGAACTTGCAGCTTGCCAACACCGAGGAATATATTGATGGACAATGTACTGGGAGTCTCGGAGAAATATTGATCAGGTGTAATAATGTTCTTTACCTTCGCGGAGTACCAGAGGACGAAGAGCTTGAAGATGCTGAGCGCGACTAA

Protein sequence

MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
Homology
[Close]
BLAST of CmoCh12G004040 vs. ExPASy Swiss-Prot
Match: Q9SUM2 (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At4g30220 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-37
Identity = 77/101 (76.24%), Postives = 83/101 (82.18%), Query Frame = 0 

Query: 2   SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLAN 61
           +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVD               SYMNLQL N
Sbjct: 3   TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVD---------------SYMNLQLGN 62

Query: 62  TEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD 103
           TEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEELEDA++D
Sbjct: 63  TEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQD 88

[Close]
BLAST of CmoCh12G004040 vs. ExPASy Swiss-Prot
Match: Q3T0Z8 (Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 2.7e-30
Identity = 64/95 (67.37%), Postives = 73/95 (76.84%), Query Frame = 0 

Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLA 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD                YMN+QLA
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVD---------------GYMNMQLA 60

Query: 61 NTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE 96
          NTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Sbjct: 61 NTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of CmoCh12G004040 vs. ExPASy Swiss-Prot
Match: P62306 (Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.7e-30
Identity = 64/95 (67.37%), Postives = 73/95 (76.84%), Query Frame = 0 

Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLA 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD                YMN+QLA
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVD---------------GYMNMQLA 60

Query: 61 NTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE 96
          NTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Sbjct: 61 NTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of CmoCh12G004040 vs. ExPASy Swiss-Prot
Match: P62307 (Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.7e-30
Identity = 64/95 (67.37%), Postives = 73/95 (76.84%), Query Frame = 0 

Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLA 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD                YMN+QLA
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVD---------------GYMNMQLA 60

Query: 61 NTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE 96
          NTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Sbjct: 61 NTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of CmoCh12G004040 vs. ExPASy Swiss-Prot
Match: P62321 (Small nuclear ribonucleoprotein F OS=Xenopus laevis OX=8355 GN=snrpf PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.7e-30
Identity = 64/95 (67.37%), Postives = 73/95 (76.84%), Query Frame = 0 

Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLA 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD                YMN+QLA
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVD---------------GYMNMQLA 60

Query: 61 NTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE 96
          NTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Sbjct: 61 NTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of CmoCh12G004040 vs. ExPASy TrEMBL
Match: A0A6J1GJI4 (Sm protein F OS=Cucurbita moschata OX=3662 GN=LOC111454427 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 87/102 (85.29%), Postives = 87/102 (85.29%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLA 60
           MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD               SYMNLQLA
Sbjct: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD---------------SYMNLQLA 60

Query: 61  NTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD 103
           NTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
Sbjct: 61  NTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD 87

[Close]
BLAST of CmoCh12G004040 vs. ExPASy TrEMBL
Match: A0A6J1KQT2 (Sm protein F OS=Cucurbita maxima OX=3661 GN=LOC111496373 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.5e-39
Identity = 86/102 (84.31%), Postives = 87/102 (85.29%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLA 60
           MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD               SYMNLQLA
Sbjct: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD---------------SYMNLQLA 60

Query: 61  NTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD 103
           NTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE+EDAERD
Sbjct: 61  NTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]
BLAST of CmoCh12G004040 vs. ExPASy TrEMBL
Match: A0A6J1HD26 (Sm protein F OS=Cucurbita moschata OX=3662 GN=LOC111462396 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.5e-39
Identity = 86/102 (84.31%), Postives = 87/102 (85.29%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLA 60
           MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD               SYMNLQLA
Sbjct: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD---------------SYMNLQLA 60

Query: 61  NTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD 103
           NTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE+EDAERD
Sbjct: 61  NTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]
BLAST of CmoCh12G004040 vs. ExPASy TrEMBL
Match: A0A1S3CKH5 (Sm protein F OS=Cucumis melo OX=3656 GN=LOC103501840 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.8e-38
Identity = 85/102 (83.33%), Postives = 86/102 (84.31%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLA 60
           MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD               SYMNLQLA
Sbjct: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD---------------SYMNLQLA 60

Query: 61  NTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD 103
           NTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEE+EDAERD
Sbjct: 61  NTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]
BLAST of CmoCh12G004040 vs. ExPASy TrEMBL
Match: A0A5D3DWN8 (Sm protein F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00490 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.8e-38
Identity = 85/102 (83.33%), Postives = 86/102 (84.31%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLA 60
           MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD               SYMNLQLA
Sbjct: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD---------------SYMNLQLA 60

Query: 61  NTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD 103
           NTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEE+EDAERD
Sbjct: 61  NTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]
BLAST of CmoCh12G004040 vs. TAIR 10
Match: AT4G30220.1 (small nuclear ribonucleoprotein F )

HSP 1 Score: 156.8 bits (395), Expect = 9.5e-39
Identity = 77/101 (76.24%), Postives = 83/101 (82.18%), Query Frame = 0 

Query: 2   SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLAN 61
           +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVD               SYMNLQL N
Sbjct: 3   TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVD---------------SYMNLQLGN 62

Query: 62  TEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD 103
           TEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEELEDA++D
Sbjct: 63  TEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQD 88

[Close]
BLAST of CmoCh12G004040 vs. TAIR 10
Match: AT4G30220.2 (small nuclear ribonucleoprotein F )

HSP 1 Score: 156.8 bits (395), Expect = 9.5e-39
Identity = 77/101 (76.24%), Postives = 83/101 (82.18%), Query Frame = 0 

Query: 2   SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLAN 61
           +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVD               SYMNLQL N
Sbjct: 11  TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVD---------------SYMNLQLGN 70

Query: 62  TEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD 103
           TEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEELEDA++D
Sbjct: 71  TEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQD 96

[Close]
BLAST of CmoCh12G004040 vs. TAIR 10
Match: AT2G14285.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-23
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 0 

Query: 27  MEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLY 86
           MEYKGFL SVD               SYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY
Sbjct: 1   MEYKGFLASVD---------------SYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLY 60

Query: 87  LRGVPEDEELEDAERD 103
           +RGVPEDEELEDA++D
Sbjct: 61  VRGVPEDEELEDADQD 61

[Close]
BLAST of CmoCh12G004040 vs. TAIR 10
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-10
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 0 

Query: 7  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYI 66
          P  FL ++ GK VVVKL  G++Y+G L                C   YMN+ +  TEEY+
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILT---------------CLDGYMNIAMEQTEEYV 74

Query: 67 DGQCTGSLGEILIRCNNVLYL 88
          +GQ   + G+  +R NNVLY+
Sbjct: 75 NGQLKNTYGDAFVRGNNVLYI 80

[Close]
BLAST of CmoCh12G004040 vs. TAIR 10
Match: AT2G43810.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-10
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 0 

Query: 7  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYI 66
          P  FL ++ GK VVVKL  G++Y+G L                C   YMN+ +  TEEY+
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILT---------------CLDGYMNIAMEQTEEYV 74

Query: 67 DGQCTGSLGEILIRCNNVLYL 88
          +GQ   + G+  +R NNVLY+
Sbjct: 75 NGQLKNTYGDAFVRGNNVLYI 80

The following BLAST results are available for this feature:
BLAST of CmoCh12G004040 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SUM21.3e-3776.24Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At... [more]
Q3T0Z82.7e-3067.37Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2[more]
P623062.7e-3067.37Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1[more]
P623072.7e-3067.37Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1[more]
P623212.7e-3067.37Small nuclear ribonucleoprotein F OS=Xenopus laevis OX=8355 GN=snrpf PE=3 SV=1[more]
BLAST of CmoCh12G004040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GJI41.5e-3985.29Sm protein F OS=Cucurbita moschata OX=3662 GN=LOC111454427 PE=3 SV=1[more]
A0A6J1KQT22.5e-3984.31Sm protein F OS=Cucurbita maxima OX=3661 GN=LOC111496373 PE=3 SV=1[more]
A0A6J1HD262.5e-3984.31Sm protein F OS=Cucurbita moschata OX=3662 GN=LOC111462396 PE=3 SV=1[more]
A0A1S3CKH54.8e-3883.33Sm protein F OS=Cucumis melo OX=3656 GN=LOC103501840 PE=3 SV=1[more]
A0A5D3DWN84.8e-3883.33Sm protein F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00490 P... [more]
BLAST of CmoCh12G004040 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G30220.19.5e-3976.24small nuclear ribonucleoprotein F [more]
AT4G30220.29.5e-3976.24small nuclear ribonucleoprotein F [more]
AT2G14285.11.5e-2371.05Small nuclear ribonucleoprotein family protein [more]
AT2G43810.11.9e-1038.27Small nuclear ribonucleoprotein family protein [more]
AT2G43810.21.9e-1038.27Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..89
e-value: 4.8E-16
score: 69.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..43
e-value: 1.1E-10
score: 41.1
coord: 51..87
e-value: 6.0E-9
score: 35.5
NoneNo IPR availableGENE3D2.30.30.100coord: 1..45
e-value: 4.8E-17
score: 63.4
coord: 47..92
e-value: 2.8E-16
score: 61.0
NoneNo IPR availablePIRSFPIRSF006609snRNP_SmFcoord: 1..45
e-value: 2.6E-19
score: 66.8
coord: 46..98
e-value: 2.1E-17
score: 60.8
NoneNo IPR availablePANTHERPTHR11021:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Fcoord: 48..98
coord: 2..44
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 48..98
coord: 2..44
IPR034100Small nuclear ribonucleoprotein FCDDcd01722Sm_Fcoord: 6..89
e-value: 1.83547E-44
score: 136.573
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 48..91
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 6..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G004040.1CmoCh12G004040.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding