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CmoCh12G003900 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATACATATTCTTATTTTTCTACCCGAACCGAAAGAAAGGCGAAGGGTACTTACTGCCCACTGCTCGCTATATAAATACCTGCCCGTCGCCGTCTCCCTCCATCGCTGCAGTTTTCTTATACGGATAAGACTTTTCGCAGGAAAGCGATTTCTGTGTATTCCAATGGCTGAAGAAGGGCAAGTGATCGCATGCCATAAGAAAGCTGAGTGGGATGCTCATTTAGCGAAAGCGAAGGAATCTGGAAAACTGGTATCGTATTGTTGTTTTTGTTTTTAAGGCTCCTCATTTCTAGATTTCAATTGATTTCGATCGGATTTTGGATTTACTGGATATTATGTGTATTGAAGCATTTCACGTTTATGATTGCTTGTTAGGAGATCGTTTGATGTTTTGGTAAAAGTCGCGATGGATTCGTTAGGGTTTCTGATCTCTCTTACGCTAGTAGTAATATTCGATTTATCTCGATTGAATGATCGTGTTGAAATTGATGCTTTCGAGTTTTCCTTTATAACGTTTTGTGGAATCTTTTGATTTGTGTTATTCTTTAATCATTCTCTGTTACTTTTTTCGTTCTTTTTGGTAAGAAATTGTTGATTATTCTATTTTGCGTTGACCGAACTTGAGTGATTCTGTATTACAGTTTGTGTCTGTTTTTTTGTTCCTGATGATTCTTAAGTTTTGTTTGATAGATTGTTGTGGATTTTACTGCTTCCTGGTGCGGGCCATGCCGTACAATTGCTCCATATTTCTCAGAATTGGCTAAGAATCATCCCGGTGTCGTTTTCCTGAAAGTGGACGTCGATGAATTGAACGTAAATATATTGAATCTCTTTTAACTCTTCTCAATCTATGATATCATATGTCAACATTTCTGTTCCATCGCGATATTGCTGATTACTGTAGCATGCAGTGGAGCTGTTTTCTTTTTGATTGATCAAACAAAGGCTTCTGTTTCTCTCTGCAGACTGTTGCTACCGAGTGGGAGATCAATGCAATGCCGACATTTGTTTTCATGAAACGAGGGGAAACAGTTCACAAGATTGTTGGTGCTGATAAATCGGCGCTGTTGAAAAAAATAGAAGAGCTCAAGACTCCAACTGCTGCTACTACTTCTTCTACTGCTTAGACACAATCAGCTTGGAGGATGTGGCCTCGTTGATTAGTATGGTGCAATGATGCTTCTGTTTTCGAGTTTGATCTTCTTGTCAATTTCATACGTTGTGTCTATGATCTCCACGGTTTTGTTTTCCCTAAAAGAAGTTGGATTATATGCAGAACTCTGAAAGATGATTCTGGTTCTTGTTATCTAGAACTTGCAGGTTTCAATGTGGAATAAATGGGGCTGGAATTTTTGTTGAATTCTCAAGTCTCATGATTTACACATTCTACCAGCAGGCTTCCGTAAGATCTTGACTCTATTTCTTATCTAATTCTCCATGGATGATGTTGTTTCAGCTTATTCTCATAGTAACTAAGAAGAATTGTTTCCTATGAGAAGAATCGTCAACATACACTTGAATTCCGTTCATGTCTAATACATGTTTGAACTTTGAAACTTTTAATTCCATGTCTATCTCTTATGTTAAGGACTTTATAAACACGAAATTGAATGTAGACGTTCTACGAATATCATTAGTTGATTTTTAATCTATGGTTTACTGAAGAACAGGGTGGCTGTGTGGCCTCGATAGAAGCACATCAGCGCATATGGAAAGGGGCTTCATATCCTGCAAGTTTTTCCCTTCTCTAGTCGTCGTCAAAAGAAAATAAATAATAATAATAATAATCATAATTCCCTAAAGAATGAATTTTTTAGCTTTTGGTTTGATGTGGT CATACATATTCTTATTTTTCTACCCGAACCGAAAGAAAGGCGAAGGGTACTTACTGCCCACTGCTCGCTATATAAATACCTGCCCGTCGCCGTCTCCCTCCATCGCTGCAGTTTTCTTATACGGATAAGACTTTTCGCAGGAAAGCGATTTCTGTGTATTCCAATGGCTGAAGAAGGGCAAGTGATCGCATGCCATAAGAAAGCTGAGTGGGATGCTCATTTAGCGAAAGCGAAGGAATCTGGAAAACTGATTGTTGTGGATTTTACTGCTTCCTGGTGCGGGCCATGCCGTACAATTGCTCCATATTTCTCAGAATTGGCTAAGAATCATCCCGGTGTCGTTTTCCTGAAAGTGGACGTCGATGAATTGAACACTGTTGCTACCGAGTGGGAGATCAATGCAATGCCGACATTTGTTTTCATGAAACGAGGGGAAACAGTTCACAAGATTGTTGGTGCTGATAAATCGGCGCTGTTGAAAAAAATAGAAGAGCTCAAGACTCCAACTGCTGCTACTACTTCTTCTACTGCTTAGACACAATCAGCTTGGAGGATGTGGCCTCGTTGATTAGTATGGTGCAATGATGCTTCTGTTTTCGAGTTTGATCTTCTTGTCAATTTCATACGTTGTGTCTATGATCTCCACGGTTTTGTTTTCCCTAAAAGAAGTTGGATTATATGCAGAACTCTGAAAGATGATTCTGGTTCTTGTTATCTAGAACTTGCAGGTTTCAATGTGGAATAAATGGGGCTGGAATTTTTGTTGAATTCTCAAGTCTCATGATTTACACATTCTACCAGCAGGCTTCCGTAAGATCTTGACTCTATTTCTTATCTAATTCTCCATGGATGATGTTGTTTCAGCTTATTCTCATAGTAACTAAGAAGAATTGTTTCCTATGAGAAGAATCGTCAACATACACTTGAATTCCGTTCATGTCTAATACATGTTTGAACTTTGAAACTTTTAATTCCATGTCTATCTCTTATGTTAAGGACTTTATAAACACGAAATTGAATGTAGACGTTCTACGAATATCATTAGTTGATTTTTAATCTATGGTTTACTGAAGAACAGGGTGGCTGTGTGGCCTCGATAGAAGCACATCAGCGCATATGGAAAGGGGCTTCATATCCTGCAAGTTTTTCCCTTCTCTAGTCGTCGTCAAAAGAAAATAAATAATAATAATAATAATCATAATTCCCTAAAGAATGAATTTTTTAGCTTTTGGTTTGATGTGGT ATGGCTGAAGAAGGGCAAGTGATCGCATGCCATAAGAAAGCTGAGTGGGATGCTCATTTAGCGAAAGCGAAGGAATCTGGAAAACTGATTGTTGTGGATTTTACTGCTTCCTGGTGCGGGCCATGCCGTACAATTGCTCCATATTTCTCAGAATTGGCTAAGAATCATCCCGGTGTCGTTTTCCTGAAAGTGGACGTCGATGAATTGAACACTGTTGCTACCGAGTGGGAGATCAATGCAATGCCGACATTTGTTTTCATGAAACGAGGGGAAACAGTTCACAAGATTGTTGGTGCTGATAAATCGGCGCTGTTGAAAAAAATAGAAGAGCTCAAGACTCCAACTGCTGCTACTACTTCTTCTACTGCTTAG MAEEGQVIACHKKAEWDAHLAKAKESGKLIVVDFTASWCGPCRTIAPYFSELAKNHPGVVFLKVDVDELNTVATEWEINAMPTFVFMKRGETVHKIVGADKSALLKKIEELKTPTAATTSSTA Homology
BLAST of CmoCh12G003900 vs. ExPASy Swiss-Prot
Match: Q96419 (Thioredoxin H-type OS=Fagopyrum esculentum OX=3617 PE=3 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 9.8e-35 Identity = 69/108 (63.89%), Postives = 80/108 (74.07%), Query Frame = 0
BLAST of CmoCh12G003900 vs. ExPASy Swiss-Prot
Match: Q0D840 (Thioredoxin H1 OS=Oryza sativa subsp. japonica OX=39947 GN=TRXH PE=1 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 6.4e-34 Identity = 70/120 (58.33%), Postives = 87/120 (72.50%), Query Frame = 0
BLAST of CmoCh12G003900 vs. ExPASy Swiss-Prot
Match: A2YIW7 (Thioredoxin H-type OS=Oryza sativa subsp. indica OX=39946 GN=TRXH PE=1 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 6.4e-34 Identity = 70/120 (58.33%), Postives = 87/120 (72.50%), Query Frame = 0
BLAST of CmoCh12G003900 vs. ExPASy Swiss-Prot
Match: Q42403 (Thioredoxin H3 OS=Arabidopsis thaliana OX=3702 GN=TRX3 PE=1 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 8.3e-34 Identity = 69/117 (58.97%), Postives = 84/117 (71.79%), Query Frame = 0
BLAST of CmoCh12G003900 vs. ExPASy Swiss-Prot
Match: P29448 (Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 3.2e-33 Identity = 65/107 (60.75%), Postives = 80/107 (74.77%), Query Frame = 0
BLAST of CmoCh12G003900 vs. ExPASy TrEMBL
Match: A0A6J1GHE8 (thioredoxin H-type-like OS=Cucurbita moschata OX=3662 GN=LOC111454193 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 2.3e-63 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
BLAST of CmoCh12G003900 vs. ExPASy TrEMBL
Match: A0A6J1KLL7 (thioredoxin H-type-like OS=Cucurbita maxima OX=3661 GN=LOC111496363 PE=4 SV=1) HSP 1 Score: 246.9 bits (629), Expect = 4.4e-62 Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0
BLAST of CmoCh12G003900 vs. ExPASy TrEMBL
Match: A0A1S3BB48 (thioredoxin H1-like OS=Cucumis melo OX=3656 GN=LOC103488007 PE=4 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53 Identity = 103/121 (85.12%), Postives = 115/121 (95.04%), Query Frame = 0
BLAST of CmoCh12G003900 vs. ExPASy TrEMBL
Match: A0A0A0LRK2 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G362490 PE=4 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 1.6e-51 Identity = 100/123 (81.30%), Postives = 113/123 (91.87%), Query Frame = 0
BLAST of CmoCh12G003900 vs. ExPASy TrEMBL
Match: K7NBX3 (Thioredoxin H OS=Siraitia grosvenorii OX=190515 PE=2 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 3.2e-44 Identity = 88/121 (72.73%), Postives = 100/121 (82.64%), Query Frame = 0
BLAST of CmoCh12G003900 vs. TAIR 10
Match: AT5G42980.1 (thioredoxin 3 ) HSP 1 Score: 144.4 bits (363), Expect = 5.9e-35 Identity = 69/117 (58.97%), Postives = 84/117 (71.79%), Query Frame = 0
BLAST of CmoCh12G003900 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 ) HSP 1 Score: 142.5 bits (358), Expect = 2.2e-34 Identity = 65/107 (60.75%), Postives = 80/107 (74.77%), Query Frame = 0
BLAST of CmoCh12G003900 vs. TAIR 10
Match: AT1G19730.1 (Thioredoxin superfamily protein ) HSP 1 Score: 135.6 bits (340), Expect = 2.7e-32 Identity = 67/108 (62.04%), Postives = 77/108 (71.30%), Query Frame = 0
BLAST of CmoCh12G003900 vs. TAIR 10
Match: AT1G45145.1 (thioredoxin H-type 5 ) HSP 1 Score: 132.5 bits (332), Expect = 2.3e-31 Identity = 61/108 (56.48%), Postives = 77/108 (71.30%), Query Frame = 0
BLAST of CmoCh12G003900 vs. TAIR 10
Match: AT3G17880.1 (tetraticopeptide domain-containing thioredoxin ) HSP 1 Score: 119.0 bits (297), Expect = 2.7e-27 Identity = 51/107 (47.66%), Postives = 78/107 (72.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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