CmoCh12G003600 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTTGGTTGATAAGAGAGAGGAGAGGCCCATCATGGAAACAAGGATGGGCAGAGCAGGCCTTGGCCTCCATAGCTCCTCCGCCAAGGCCTCTGCTTGCTGTTCTTGGAATCTTGGTCATTTTGCTATCTGTGTCATCATATTCAAGCTACAGATCCCAGGTGAAAAGAACAAAGGTCAATTTCAAGATCTTTTTCTTGTTATTACCTCTAGTGTTTGTGTTTGTTGGAAACTCGATTGTTAGATATGGTCGTCTTGTAATCATCACTCCGAGAACAAAGCTCGAGCCGGTATACGTCGCAGAAGGCACCGCTGCCTCACCTTGGGGTGCGGCGGCGTTGCTGGTGGTGTTGTTGGTTTTGATATCTTATCAGCCTTACTTCCACTCTAAATGGTTTCCATCAATATGGAGACCGTATTATTATTAG ATGGGTTGGTTGATAAGAGAGAGGAGAGGCCCATCATGGAAACAAGGATGGGCAGAGCAGGCCTTGGCCTCCATAGCTCCTCCGCCAAGGCCTCTGCTTGCTGTTCTTGGAATCTTGGTCATTTTGCTATCTGTGTCATCATATTCAAGCTACAGATCCCAGGTGAAAAGAACAAAGGTCAATTTCAAGATCTTTTTCTTGTTATTACCTCTAGTGTTTGTGTTTGTTGGAAACTCGATTGTTAGATATGGTCGTCTTGTAATCATCACTCCGAGAACAAAGCTCGAGCCGGTATACGTCGCAGAAGGCACCGCTGCCTCACCTTGGGGTGCGGCGGCGTTGCTGGTGGTGTTGTTGGTTTTGATATCTTATCAGCCTTACTTCCACTCTAAATGGTTTCCATCAATATGGAGACCGTATTATTATTAG ATGGGTTGGTTGATAAGAGAGAGGAGAGGCCCATCATGGAAACAAGGATGGGCAGAGCAGGCCTTGGCCTCCATAGCTCCTCCGCCAAGGCCTCTGCTTGCTGTTCTTGGAATCTTGGTCATTTTGCTATCTGTGTCATCATATTCAAGCTACAGATCCCAGGTGAAAAGAACAAAGGTCAATTTCAAGATCTTTTTCTTGTTATTACCTCTAGTGTTTGTGTTTGTTGGAAACTCGATTGTTAGATATGGTCGTCTTGTAATCATCACTCCGAGAACAAAGCTCGAGCCGGTATACGTCGCAGAAGGCACCGCTGCCTCACCTTGGGGTGCGGCGGCGTTGCTGGTGGTGTTGTTGGTTTTGATATCTTATCAGCCTTACTTCCACTCTAAATGGTTTCCATCAATATGGAGACCGTATTATTATTAG MGWLIRERRGPSWKQGWAEQALASIAPPPRPLLAVLGILVILLSVSSYSSYRSQVKRTKVNFKIFFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVAEGTAASPWGAAALLVVLLVLISYQPYFHSKWFPSIWRPYYY Homology
BLAST of CmoCh12G003600 vs. ExPASy TrEMBL
Match: A0A5A7VAG3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004990 PE=4 SV=1) HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66 Identity = 129/143 (90.21%), Postives = 138/143 (96.50%), Query Frame = 0
BLAST of CmoCh12G003600 vs. ExPASy TrEMBL
Match: A0A0A0LNS9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368800 PE=4 SV=1) HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66 Identity = 129/143 (90.21%), Postives = 138/143 (96.50%), Query Frame = 0
BLAST of CmoCh12G003600 vs. ExPASy TrEMBL
Match: A0A5N6R8L3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013952 PE=4 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 4.2e-40 Identity = 78/142 (54.93%), Postives = 108/142 (76.06%), Query Frame = 0
BLAST of CmoCh12G003600 vs. ExPASy TrEMBL
Match: A0A6P9DT84 (uncharacterized protein LOC118343814 OS=Juglans regia OX=51240 GN=LOC118343814 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 2.7e-39 Identity = 76/140 (54.29%), Postives = 107/140 (76.43%), Query Frame = 0
BLAST of CmoCh12G003600 vs. ExPASy TrEMBL
Match: A0A2P5DBR5 (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_077530 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 1.3e-38 Identity = 76/140 (54.29%), Postives = 107/140 (76.43%), Query Frame = 0
BLAST of CmoCh12G003600 vs. TAIR 10
Match: AT5G42146.1 (unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 115.9 bits (289), Expect = 2.6e-26 Identity = 59/137 (43.07%), Postives = 87/137 (63.50%), Query Frame = 0
BLAST of CmoCh12G003600 vs. TAIR 10
Match: AT5G19875.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 51.6 bits (122), Expect = 6.0e-07 Identity = 35/107 (32.71%), Postives = 59/107 (55.14%), Query Frame = 0
BLAST of CmoCh12G003600 vs. TAIR 10
Match: AT2G21180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.8 bits (112), Expect = 8.7e-06 Identity = 35/116 (30.17%), Postives = 52/116 (44.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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