CmoCh12G003600 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G003600
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionTransmembrane protein
LocationCmo_Chr12: 2228792 .. 2229220 (+)
RNA-Seq ExpressionCmoCh12G003600
SyntenyCmoCh12G003600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGGTTGATAAGAGAGAGGAGAGGCCCATCATGGAAACAAGGATGGGCAGAGCAGGCCTTGGCCTCCATAGCTCCTCCGCCAAGGCCTCTGCTTGCTGTTCTTGGAATCTTGGTCATTTTGCTATCTGTGTCATCATATTCAAGCTACAGATCCCAGGTGAAAAGAACAAAGGTCAATTTCAAGATCTTTTTCTTGTTATTACCTCTAGTGTTTGTGTTTGTTGGAAACTCGATTGTTAGATATGGTCGTCTTGTAATCATCACTCCGAGAACAAAGCTCGAGCCGGTATACGTCGCAGAAGGCACCGCTGCCTCACCTTGGGGTGCGGCGGCGTTGCTGGTGGTGTTGTTGGTTTTGATATCTTATCAGCCTTACTTCCACTCTAAATGGTTTCCATCAATATGGAGACCGTATTATTATTAG

mRNA sequence

ATGGGTTGGTTGATAAGAGAGAGGAGAGGCCCATCATGGAAACAAGGATGGGCAGAGCAGGCCTTGGCCTCCATAGCTCCTCCGCCAAGGCCTCTGCTTGCTGTTCTTGGAATCTTGGTCATTTTGCTATCTGTGTCATCATATTCAAGCTACAGATCCCAGGTGAAAAGAACAAAGGTCAATTTCAAGATCTTTTTCTTGTTATTACCTCTAGTGTTTGTGTTTGTTGGAAACTCGATTGTTAGATATGGTCGTCTTGTAATCATCACTCCGAGAACAAAGCTCGAGCCGGTATACGTCGCAGAAGGCACCGCTGCCTCACCTTGGGGTGCGGCGGCGTTGCTGGTGGTGTTGTTGGTTTTGATATCTTATCAGCCTTACTTCCACTCTAAATGGTTTCCATCAATATGGAGACCGTATTATTATTAG

Coding sequence (CDS)

ATGGGTTGGTTGATAAGAGAGAGGAGAGGCCCATCATGGAAACAAGGATGGGCAGAGCAGGCCTTGGCCTCCATAGCTCCTCCGCCAAGGCCTCTGCTTGCTGTTCTTGGAATCTTGGTCATTTTGCTATCTGTGTCATCATATTCAAGCTACAGATCCCAGGTGAAAAGAACAAAGGTCAATTTCAAGATCTTTTTCTTGTTATTACCTCTAGTGTTTGTGTTTGTTGGAAACTCGATTGTTAGATATGGTCGTCTTGTAATCATCACTCCGAGAACAAAGCTCGAGCCGGTATACGTCGCAGAAGGCACCGCTGCCTCACCTTGGGGTGCGGCGGCGTTGCTGGTGGTGTTGTTGGTTTTGATATCTTATCAGCCTTACTTCCACTCTAAATGGTTTCCATCAATATGGAGACCGTATTATTATTAG

Protein sequence

MGWLIRERRGPSWKQGWAEQALASIAPPPRPLLAVLGILVILLSVSSYSSYRSQVKRTKVNFKIFFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVAEGTAASPWGAAALLVVLLVLISYQPYFHSKWFPSIWRPYYY
Homology
BLAST of CmoCh12G003600 vs. ExPASy TrEMBL
Match: A0A5A7VAG3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004990 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 129/143 (90.21%), Postives = 138/143 (96.50%), Query Frame = 0

Query: 1   MGWLIRERRGPSWKQGWAEQALASIAPPPRPLLAVLGILVILLSVSSYSSYRSQVKRTKV 60
           MGWLIRERRGP+WKQGWAEQAL+SI PPPRPLLA+LGILVILLSVSSYSSYRSQVK+T++
Sbjct: 1   MGWLIRERRGPAWKQGWAEQALSSITPPPRPLLAILGILVILLSVSSYSSYRSQVKKTRI 60

Query: 61  NFKIFFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVAEGTA-ASPWGAAALLVVLL 120
           NFK+FFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYV EG A ASPWGAA LLVVLL
Sbjct: 61  NFKLFFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTEGAASASPWGAAVLLVVLL 120

Query: 121 VLISYQPYFHSKWFPSIWRPYYY 143
           VL+SYQPYFHSKWFP+IWRPYYY
Sbjct: 121 VLLSYQPYFHSKWFPAIWRPYYY 143

BLAST of CmoCh12G003600 vs. ExPASy TrEMBL
Match: A0A0A0LNS9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368800 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 129/143 (90.21%), Postives = 138/143 (96.50%), Query Frame = 0

Query: 1   MGWLIRERRGPSWKQGWAEQALASIAPPPRPLLAVLGILVILLSVSSYSSYRSQVKRTKV 60
           MGWLIRERRGP+WKQGWAEQAL+SI PPPRPLLA+LGILVILLSVSSYSSYRSQVK+T++
Sbjct: 1   MGWLIRERRGPAWKQGWAEQALSSITPPPRPLLAILGILVILLSVSSYSSYRSQVKKTRI 60

Query: 61  NFKIFFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVAEGTA-ASPWGAAALLVVLL 120
           NFK+FFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYV EG A ASPWGAA LLVVLL
Sbjct: 61  NFKLFFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTEGAASASPWGAAVLLVVLL 120

Query: 121 VLISYQPYFHSKWFPSIWRPYYY 143
           VL+SYQPYFHSKWFP+IWRPYYY
Sbjct: 121 VLLSYQPYFHSKWFPAIWRPYYY 143

BLAST of CmoCh12G003600 vs. ExPASy TrEMBL
Match: A0A5N6R8L3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013952 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.2e-40
Identity = 78/142 (54.93%), Postives = 108/142 (76.06%), Query Frame = 0

Query: 1   MGWLIRERRGPSWKQGWAEQALASIAPPPRPLLAVLGILVILLSVSSYSSYRSQVKRTKV 60
           MGW +RERRGP+WKQGW EQ L SI+PPP PLL + GI+V+LL +SSY++Y+SQ+ +T +
Sbjct: 1   MGWFLRERRGPAWKQGWTEQTLHSISPPPMPLLTIAGIMVLLLLLSSYTNYKSQMHQTII 60

Query: 61  NFKIFFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVAEGTAASPWGAAALLVVLLV 120
           NFK F  LLPL+ +FV + I +YGR+VI+ P TK++ V+ A+     PWG   LL++L++
Sbjct: 61  NFKFFLFLLPLLLIFVMHMITKYGRIVILAPITKIDAVHQAQSLPPMPWGLGLLLLLLVL 120

Query: 121 LISYQPYFHSKWFPSIWRPYYY 143
           ++SYQ YFHSKW+P IW   YY
Sbjct: 121 MLSYQSYFHSKWWPPIWGSSYY 142

BLAST of CmoCh12G003600 vs. ExPASy TrEMBL
Match: A0A6P9DT84 (uncharacterized protein LOC118343814 OS=Juglans regia OX=51240 GN=LOC118343814 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.7e-39
Identity = 76/140 (54.29%), Postives = 107/140 (76.43%), Query Frame = 0

Query: 1   MGWLIRERRGPSWKQGWAEQALASIAPPPRPLLAVLGILVILLSVSSYSSYRSQVKRTKV 60
           MGW  RERRGP+WK GW EQ LASI+PPP PL+A+ GI+V+LL ++SY +YRSQ+++T +
Sbjct: 1   MGWFFRERRGPAWKHGWTEQTLASISPPPLPLVAIAGIMVLLLLLNSYVTYRSQIRQTVI 60

Query: 61  NFKIFFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVAEGTAASPWGAAALLVVLLV 120
            FK+F  +LP++ +F+ +SI +YGR+VI  P TK + V+ AE     PWG A L++VL++
Sbjct: 61  TFKLFLFVLPVLLIFLMHSITKYGRIVIAAPITKNDTVHQAESLGLLPWGLALLVLVLVL 120

Query: 121 LISYQPYFHSKWFPSIWRPY 141
           ++SYQPYFHS W+P IW  Y
Sbjct: 121 MLSYQPYFHSMWWPQIWGFY 140

BLAST of CmoCh12G003600 vs. ExPASy TrEMBL
Match: A0A2P5DBR5 (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_077530 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.3e-38
Identity = 76/140 (54.29%), Postives = 107/140 (76.43%), Query Frame = 0

Query: 1   MGWLIRERRGPSWKQGWAEQALASIAPPPRPLLAVLGILVILLSVSSYSSYRSQVKRTKV 60
           MGW +RE    SWK GW E+ LAS++ PP PL+A++GI+V+LLS+SSY++Y+SQV++T +
Sbjct: 1   MGWFLREGSSSSWKVGWTERTLASLSAPPLPLVAMVGIVVVLLSISSYANYKSQVQKTMI 60

Query: 61  NFKIFFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVAEGTAASPWGAAALLVVLLV 120
            FK+F L LPL+ +F+ NS+ +YG L II+P TK EP   ++G   SPWG A LL++L+V
Sbjct: 61  GFKLFLLFLPLLLIFLANSVTKYGSLYIISPTTKREPATASQG-GGSPWGVALLLILLVV 120

Query: 121 LISYQPYFHSKWFPSIWRPY 141
           LISY+ YFHSKW+P +W  Y
Sbjct: 121 LISYKSYFHSKWWPPVWGSY 139

BLAST of CmoCh12G003600 vs. TAIR 10
Match: AT5G42146.1 (unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-26
Identity = 59/137 (43.07%), Postives = 87/137 (63.50%), Query Frame = 0

Query: 1   MGWLIRERRGPSWKQGWAEQALASIAPPPRPLLAVLGILVILLSVSSYSSYRSQVKRTKV 60
           MGW I+ERRG SWK+GW E+ L + + PP  LLA+L I+ +LL +SSY  Y+ +V++T  
Sbjct: 1   MGWFIKERRGGSWKRGWLEETLLTSSAPPLTLLALLAIISLLLFLSSYPRYKYEVEKTAA 60

Query: 61  NFKIFFLLLPLVFVFVGNSIVRYGRLVIITP-RTKLEPVYVAEGTAASPWGAAALLVVLL 120
           N K+F L LP++FVFV  S+    RL+  +    +        G    PWG   +L++LL
Sbjct: 61  NLKLFMLFLPILFVFVLVSLSFVHRLLFKSSYSVRANQAKSLFGEGNFPWGVLLMLILLL 120

Query: 121 VLISYQPYFHSKWFPSI 137
           +L+S Q YFHS W+P++
Sbjct: 121 LLVSKQSYFHSLWYPNL 137

BLAST of CmoCh12G003600 vs. TAIR 10
Match: AT5G19875.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 6.0e-07
Identity = 35/107 (32.71%), Postives = 59/107 (55.14%), Query Frame = 0

Query: 29  PRPLLAVLGILV-ILLSVSSYSSYRSQVKRTKVNFKIFFLLLPLVFVFVGNSIVRYGRLV 88
           P P L  L I+V  +LS + Y ++ S ++ T  + K+ F+  PL  + + +     G L 
Sbjct: 18  PNPHLCFLFIVVFFVLSFTWYLNFESIIEDTLDHLKLVFIFTPLFLLLLVHFF--SGGLS 77

Query: 89  IITPRTKLEPVYVAEGTAASPWGAAALLVVLLVLISYQPYFHSKWFP 135
              P  + + ++ A    +SPWG AA+LV++L ++SYQ  F  +WFP
Sbjct: 78  FYVPWPEQDSIHRA---GSSPWGVAAVLVLILFMVSYQSDFQERWFP 119

BLAST of CmoCh12G003600 vs. TAIR 10
Match: AT2G21180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 8.7e-06
Identity = 35/116 (30.17%), Postives = 52/116 (44.83%), Query Frame = 0

Query: 24  SIAPPPRPLLAVLGILVILLSVSSYSSYRSQVKRTKVNFKIFFLLLPLVFVF-------V 83
           S++P P P+L +L +  + L  S Y S     +  +       LL+PL  +        +
Sbjct: 15  SLSPLPYPVLLILAVASVFLLSSWYFSLEEAAESAEEQINFALLLIPLFLIVLVRWLSSM 74

Query: 84  GNSIVRYGRLVIITPRTKLEPVYVAEGTAASPWGAAALLVVLLVLISYQPYFHSKW 133
            N     G        T + P    +G  +SPWG AAL+V+LLVL+ YQ  F   W
Sbjct: 75  ENPDALLGMFSSSRRTTYVSPGAGGDG-GSSPWGVAALIVLLLVLLQYQSSFLEMW 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VAG31.2e-6690.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LNS91.2e-6690.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368800 PE=4 SV=1[more]
A0A5N6R8L34.2e-4054.93Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013952 PE=4 SV=1[more]
A0A6P9DT842.7e-3954.29uncharacterized protein LOC118343814 OS=Juglans regia OX=51240 GN=LOC118343814 P... [more]
A0A2P5DBR51.3e-3854.29Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_077530 PE=4... [more]
Match NameE-valueIdentityDescription
AT5G42146.12.6e-2643.07unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bac... [more]
AT5G19875.16.0e-0732.71unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT2G21180.18.7e-0630.17unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306EXPRESSED PROTEIN-RELATED-RELATEDcoord: 1..140
NoneNo IPR availablePANTHERPTHR33306:SF26PROTEIN, PUTATIVE-RELATEDcoord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G003600.1CmoCh12G003600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane