CmoCh12G003070 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G003070
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L39
LocationCmo_Chr12: 1912040 .. 1913297 (-)
RNA-Seq ExpressionCmoCh12G003070
SyntenyCmoCh12G003070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATCCGTGACCGTGACGCCCATGGCTGGTTATTATCCATCAATCCCGTTGATTATGGGTATTTGACTGACGCCACATATACTGACGTGTCTCTTTCTCATTTGTCCGTCACGATCCTTCCAACCATAAAACCTATTTATTTAACCACTCTTTCACGGTCTGTTCCTAACTTTATTTAAAAAAAAAAGAAAAACTTTAAATTTTTGAAATGGGCCTTTTGGGTATATGAGCCCAATGAATATGTTTTATGGATCGGCCCATTATATTGTCCGGGTTGGACCGAGACTTCCCGTTAATTTCCGGGCAGCATGGTTTTGGCGGTTCATATAAAAGGCGCATCTCCTCTTTTTCCCTCTCTCTGAAATTAGGGTTTTTGCTCGTTGGTCGCTGTCCGAAGCCCTCGCAGCCGGTTCCCGAATCTCGAAGATGGTAACTATTTCTTCATTGGAATGATTTCGTTTCTGCATTTTATTTCTCGATTTGTTTTGCATTGTACTTTCAATTGATTTTTGTTTTGGGAGGCTTTGTGATGTAAGTTTTCTTAATCATGCGCAGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGCCTTAGGACCGACAATACCATCAGGTATTTACTCTTCCGTTCTGGTTTCTTCCATGTTATCATTTCAATACTTTTCGATTTAAAATCAAACGCTGCATTTTGGCTTCTTGTTTAGGTACAATGCGAAGCGAAGGCACTGGCGACGTACTAAGCTCGGATTTTGAGGTGTTTTGATTGTGATTTGCTCTTCAATCCTTCGCAATTGTTTTGAAACCTATTTAAGCATTAGATGCGGTGATGACGAAGAATATAGAGCTAGATGTTTGAATTTTTGTCTCTCAATTAAGAACTTGTGGAAGAGAAACACAAGTAGTACTATTTAGCCTTACTTCTATTTTAAATATATATCTGGAGTAGTTTCAGTTCATATGTTACTATCGTGTTCGTTTCGTTTATTACTATCCTATTTCAGTTTAGTGCCTTTTCTTCTAACACCGGTGGGAGTTTCAGTTATGTCTTGATCGTTCAAGTATTCATATGAACGGGAGGAGTTTGGTATCCACACCAGGCTTTCCATTTACGTACTGTTTCTTGATTCATATATTAATTGGCTGGGTGTTTTATTGTACATATTTGAACAAATCTATCATCTACGTCACTGATGGCATTTTTGTTCGAA

mRNA sequence

ATGGTGATCCGTGACCGTGACGCCCATGGCTGGTTATTATCCATCAATCCCGTTGATTATGGGGTTTTTGCTCGTTGGTCGCTGTCCGAAGCCCTCGCAGCCGGTTCCCGAATCTCGAAGATGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGCCTTAGGACCGACAATACCATCAGGTACAATGCGAAGCGAAGGCACTGGCGACGTACTAAGCTCGGATTTTGAGGTGTTTTGATTGTGATTTGCTCTTCAATCCTTCGCAATTGTTTTGAAACCTATTTAAGCATTAGATGCGGTGATGACGAAGAATATAGAGCTAGATGTTTGAATTTTTGTCTCTCAATTAAGAACTTGTGGAAGAGAAACACAAGTAGTACTATTTAGCCTTACTTCTATTTTAAATATATATCTGGAGTAGTTTCAGTTCATATGTTACTATCGTGTTCGTTTCGTTTATTACTATCCTATTTCAGTTTAGTGCCTTTTCTTCTAACACCGGTGGGAGTTTCAGTTATGTCTTGATCGTTCAAGTATTCATATGAACGGGAGGAGTTTGGTATCCACACCAGGCTTTCCATTTACGTACTGTTTCTTGATTCATATATTAATTGGCTGGGTGTTTTATTGTACATATTTGAACAAATCTATCATCTACGTCACTGATGGCATTTTTGTTCGAA

Coding sequence (CDS)

ATGGTGATCCGTGACCGTGACGCCCATGGCTGGTTATTATCCATCAATCCCGTTGATTATGGGGTTTTTGCTCGTTGGTCGCTGTCCGAAGCCCTCGCAGCCGGTTCCCGAATCTCGAAGATGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGCCTTAGGACCGACAATACCATCAGGTACAATGCGAAGCGAAGGCACTGGCGACGTACTAAGCTCGGATTTTGA

Protein sequence

MVIRDRDAHGWLLSINPVDYGVFARWSLSEALAAGSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Homology
[Close]
BLAST of CmoCh12G003070 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 41 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 92
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmoCh12G003070 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 41 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 92
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmoCh12G003070 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 41 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 92
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmoCh12G003070 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.2e-22
Identity = 48/51 (94.12%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 41 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 92
          MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmoCh12G003070 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-21
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 41 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 92
          MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmoCh12G003070 vs. ExPASy TrEMBL
Match: A0A6J1HDM7 (uncharacterized protein LOC111462968 OS=Cucurbita moschata OX=3662 GN=LOC111462968 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.1e-25
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 31  ALAAGSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 90
           ALAAGSR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
Sbjct: 70  ALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 129

Query: 91  F 92
           F
Sbjct: 130 F 130

[Close]
BLAST of CmoCh12G003070 vs. ExPASy TrEMBL
Match: A0A0A0LM35 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382530 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.5e-24
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 32 LAAGSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 91
          +AAG RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 19 VAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78

[Close]
BLAST of CmoCh12G003070 vs. ExPASy TrEMBL
Match: A0A2P5ANB0 (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_315710 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-21
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 37 RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 92
          R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 RPAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71

[Close]
BLAST of CmoCh12G003070 vs. ExPASy TrEMBL
Match: A0A2P5AKY6 (Ribosomal protein OS=Trema orientale OX=63057 GN=TorRG33x02_347900 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-21
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 37 RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 92
          R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 RPAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71

[Close]
BLAST of CmoCh12G003070 vs. ExPASy TrEMBL
Match: A0A371GK74 (60S ribosomal protein L39 (Fragment) OS=Mucuna pruriens OX=157652 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.6e-21
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 35 GSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 92
          GS   KMPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 30 GSSTEKMPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 86

[Close]
BLAST of CmoCh12G003070 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 41 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 92
          MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmoCh12G003070 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 98.2 bits (243), Expect = 3.6e-21
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0 

Query: 41 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 92
          MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmoCh12G003070 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 90.1 bits (222), Expect = 9.8e-19
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 49 IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 92
          IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

The following BLAST results are available for this feature:
BLAST of CmoCh12G003070 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6KAJ83.2e-2296.0860S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P... [more]
P514263.2e-2296.0860S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P... [more]
P514253.2e-2296.0860S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1[more]
Q5SMI49.2e-2294.1260S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P... [more]
P514241.6e-2194.1260S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2[more]
BLAST of CmoCh12G003070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HDM74.1e-2598.36uncharacterized protein LOC111462968 OS=Cucurbita moschata OX=3662 GN=LOC1114629... [more]
A0A0A0LM353.5e-2496.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382530 PE=3 SV=1[more]
A0A2P5ANB02.1e-2196.36Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_315710 PE=3 SV=... [more]
A0A2P5AKY62.1e-2196.36Ribosomal protein OS=Trema orientale OX=63057 GN=TorRG33x02_347900 PE=3 SV=1[more]
A0A371GK743.6e-2191.2360S ribosomal protein L39 (Fragment) OS=Mucuna pruriens OX=157652 GN=RPL39 PE=3 ... [more]
BLAST of CmoCh12G003070 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G31985.11.1e-2294.12Ribosomal protein L39 family protein [more]
AT3G02190.13.6e-2190.20Ribosomal protein L39 family protein [more]
AT2G25210.19.8e-1997.67Ribosomal protein L39 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 49..89
e-value: 9.5E-22
score: 76.4
IPR000077Ribosomal protein L39eHAMAPMF_00629Ribosomal_L39ecoord: 41..91
score: 12.866076
IPR023626Ribosomal protein L39e domain superfamilyGENE3D1.10.1620.10Ribosomal protein L39ecoord: 41..91
e-value: 2.6E-29
score: 102.9
IPR023626Ribosomal protein L39e domain superfamilySUPERFAMILY48662Ribosomal protein L39ecoord: 43..90
NoneNo IPR availablePANTHERPTHR19970:SF31SUBFAMILY NOT NAMEDcoord: 29..91
NoneNo IPR availablePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 29..91
IPR020083Ribosomal protein L39e, conserved sitePROSITEPS00051RIBOSOMAL_L39Ecoord: 70..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G003070.1CmoCh12G003070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome