CmoCh12G003010 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G003010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionStress induced protein
LocationCmo_Chr12: 1885816 .. 1886298 (+)
RNA-Seq ExpressionCmoCh12G003010
SyntenyCmoCh12G003010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTTTTTCTTCTTCTTCTTCTTCTTCCGCCATTGATGAAACCTTTCGGTTGGAGGAGAGAGGATCTAACCGGATCGAGGAGGAATCGGATCTGGAAGTCGGAGTTTCGTATTCCTCCAGTGGAGGTTTCTTCGGATTCGGACCGAGGCTATCTCGGAACAGTAGTGTTCGATGCCGATATGTATCGCTGCAAACGCCGCAGAACGACGAGGAAGTGAATCAGAGTTGGATGATGAAGAAGGTGAAGAGGTTCGAGGAGATTGTAAAAGCTATGGCTAGGTCGAAGTGGAGAAGCTTCATTAACGGAATAGTTAACAAGAGACGCAGTGTGAGGTTTCAGTATGATCCGAGGAGTTATGCGCTGAACTTTGACCACGGGATCGGAGAAGATGGCGGCGGAGGTGGCCGCCATGGTTACAGTCCGCCGTCTGAACCGCCGATGGGATTGGGGATTCGGATGAATAGAAGCGAGATATGA

mRNA sequence

ATGGCGTCTTTTTCTTCTTCTTCTTCTTCTTCCGCCATTGATGAAACCTTTCGGTTGGAGGAGAGAGGATCTAACCGGATCGAGGAGGAATCGGATCTGGAAGTCGGAGTTTCGTATTCCTCCAGTGGAGGTTTCTTCGGATTCGGACCGAGGCTATCTCGGAACAGTAGTGTTCGATGCCGATATGTATCGCTGCAAACGCCGCAGAACGACGAGGAAGTGAATCAGAGTTGGATGATGAAGAAGGTGAAGAGGTTCGAGGAGATTGTAAAAGCTATGGCTAGGTCGAAGTGGAGAAGCTTCATTAACGGAATAGTTAACAAGAGACGCAGTGTGAGGTTTCAGTATGATCCGAGGAGTTATGCGCTGAACTTTGACCACGGGATCGGAGAAGATGGCGGCGGAGGTGGCCGCCATGGTTACAGTCCGCCGTCTGAACCGCCGATGGGATTGGGGATTCGGATGAATAGAAGCGAGATATGA

Coding sequence (CDS)

ATGGCGTCTTTTTCTTCTTCTTCTTCTTCTTCCGCCATTGATGAAACCTTTCGGTTGGAGGAGAGAGGATCTAACCGGATCGAGGAGGAATCGGATCTGGAAGTCGGAGTTTCGTATTCCTCCAGTGGAGGTTTCTTCGGATTCGGACCGAGGCTATCTCGGAACAGTAGTGTTCGATGCCGATATGTATCGCTGCAAACGCCGCAGAACGACGAGGAAGTGAATCAGAGTTGGATGATGAAGAAGGTGAAGAGGTTCGAGGAGATTGTAAAAGCTATGGCTAGGTCGAAGTGGAGAAGCTTCATTAACGGAATAGTTAACAAGAGACGCAGTGTGAGGTTTCAGTATGATCCGAGGAGTTATGCGCTGAACTTTGACCACGGGATCGGAGAAGATGGCGGCGGAGGTGGCCGCCATGGTTACAGTCCGCCGTCTGAACCGCCGATGGGATTGGGGATTCGGATGAATAGAAGCGAGATATGA

Protein sequence

MASFSSSSSSSAIDETFRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGPRLSRNSSVRCRYVSLQTPQNDEEVNQSWMMKKVKRFEEIVKAMARSKWRSFINGIVNKRRSVRFQYDPRSYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRMNRSEI
Homology
BLAST of CmoCh12G003010 vs. ExPASy TrEMBL
Match: A0A6J1KJS5 (uncharacterized protein LOC111496346 OS=Cucurbita maxima OX=3661 GN=LOC111496346 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.7e-72
Identity = 149/161 (92.55%), Postives = 152/161 (94.41%), Query Frame = 0

Query: 1   MASFSSSSSSSAIDETFRLEERGSNRIEEESDLEVGVSYSSSGGFFGFGPRLSRNSSVRC 60
           MAS SSSSSSSAIDETFRLEERGSNRIEEESDLEVGVSYSSSGGFF FG  LSR+SSVRC
Sbjct: 1   MAS-SSSSSSSAIDETFRLEERGSNRIEEESDLEVGVSYSSSGGFFEFGSWLSRSSSVRC 60

Query: 61  RYVSLQTP-QNDEEVNQSWMMKKVKRFEEIVKAMARSKWRSFINGIVNKRRSVRFQYDPR 120
           RYVSLQ   QNDEEVNQSWMMKKVKRFEEI++AMARSKWRSFINGIVNKRRSVRFQYDPR
Sbjct: 61  RYVSLQAQRQNDEEVNQSWMMKKVKRFEEIIQAMARSKWRSFINGIVNKRRSVRFQYDPR 120

Query: 121 SYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRMNRSEI 161
           SYALNFDHGIGEDG GGGRHGYSPPSE PMGLGIRMNRSEI
Sbjct: 121 SYALNFDHGIGEDGSGGGRHGYSPPSESPMGLGIRMNRSEI 160

BLAST of CmoCh12G003010 vs. ExPASy TrEMBL
Match: A0A6J1BV09 (uncharacterized protein LOC111004972 OS=Momordica charantia OX=3673 GN=LOC111004972 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.0e-47
Identity = 108/162 (66.67%), Postives = 132/162 (81.48%), Query Frame = 0

Query: 1   MASFSSSSSSSAIDETFRLEERGSNRIEEESDLEVGV-SYSSSGGFFGFGPRLSRNS-SV 60
           MAS+SSS+SSS+IDET R     ++RIEE+ D EVGV SYSS G FFGFG R +R+S  V
Sbjct: 1   MASYSSSTSSSSIDETLR-----TDRIEEDDDREVGVSSYSSCGCFFGFGSRQARSSDGV 60

Query: 61  RCRYVSLQTPQNDEEVNQSWMMKKVKRFEEIVKAMARSKWRSFINGIVNKRRSVRFQYDP 120
           RCRY+ LQ   ++++V QSWMMKKVKRF+EI+KA+A  KWRSFI+GI++K+RSVRFQYDP
Sbjct: 61  RCRYLPLQ--PHEDQVKQSWMMKKVKRFKEIIKAVAGRKWRSFISGIISKKRSVRFQYDP 120

Query: 121 RSYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRMNRSEI 161
           RSYALNFD G GEDGGG GRHG+  PS  P+GLGI MNRS++
Sbjct: 121 RSYALNFDEGSGEDGGGSGRHGFRAPSATPIGLGIGMNRSQV 155

BLAST of CmoCh12G003010 vs. ExPASy TrEMBL
Match: A0A6J1K5B0 (uncharacterized protein LOC111492425 OS=Cucurbita maxima OX=3661 GN=LOC111492425 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.3e-42
Identity = 101/150 (67.33%), Postives = 117/150 (78.00%), Query Frame = 0

Query: 7   SSSSSAIDETFRLEE-RGSNRIEEESDL-----EVGVSYSSSGGFFGFGPRLSRNSSVRC 66
           +SS++  DE  R EE R  +RIEE +D      EVGVSYSS G FFGFG RLSR+SSVRC
Sbjct: 2   ASSATIEDEISRSEEIRAPDRIEEGNDRDLDLDEVGVSYSSCGCFFGFGSRLSRSSSVRC 61

Query: 67  RYVSLQTPQNDEEVNQSWMMKKVKRFEEIVKAMARSKWRSFINGIVNKRRSVRFQYDPRS 126
           RY+ L   + +EEV QSWMMKKVKRF++I+KAMA  KWRSFINGIVNKRRSVRFQYDPRS
Sbjct: 62  RYLLL---RENEEVKQSWMMKKVKRFKDIIKAMAGRKWRSFINGIVNKRRSVRFQYDPRS 121

Query: 127 YALNFDHGIGEDGGGGGRHGYSPPSEPPMG 151
           YALNFD G+GE+ GGGGRHG+  P   P+G
Sbjct: 122 YALNFDEGMGEEEGGGGRHGFRQPFASPIG 148

BLAST of CmoCh12G003010 vs. ExPASy TrEMBL
Match: A0A5A7VG87 (Stress induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002220 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 7.8e-35
Identity = 101/164 (61.59%), Postives = 115/164 (70.12%), Query Frame = 0

Query: 2   ASFSSSSSSSAIDETFRLEERGSNRIEEESDL---EV-GVSYSSSGGFFGFGPRLSRNSS 61
           +S SSSSSSSAID T R E+   +RIEE  DL   EV G SYSS G FFGFG RLSR   
Sbjct: 3   SSSSSSSSSSAIDGTLRSED---DRIEEGEDLRDEEVGGFSYSSCGCFFGFGSRLSR--- 62

Query: 62  VRCRYVSLQTPQNDEEV-NQSWMMKKVKRFEEIVKAMARSKWRSFINGIVNKRRSVRFQY 121
           VR  Y+ LQ+ +  EEV  QSWMM+KVKR  EI+KAMA  KWRS INGI+NKRRSVRFQY
Sbjct: 63  VRGGYLPLQSNRKSEEVKQQSWMMRKVKRLNEIIKAMAGRKWRSLINGIINKRRSVRFQY 122

Query: 122 DPRSYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRMNRSEI 161
           DPRSYALNFD G+ E+G           S  P+GLGI MNR++I
Sbjct: 123 DPRSYALNFDEGMEEEG---------RRSLQPIGLGIGMNRNQI 151

BLAST of CmoCh12G003010 vs. ExPASy TrEMBL
Match: A0A1S3BC68 (uncharacterized protein LOC103488331 OS=Cucumis melo OX=3656 GN=LOC103488331 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 7.8e-35
Identity = 101/164 (61.59%), Postives = 115/164 (70.12%), Query Frame = 0

Query: 2   ASFSSSSSSSAIDETFRLEERGSNRIEEESDL---EV-GVSYSSSGGFFGFGPRLSRNSS 61
           +S SSSSSSSAID T R E+   +RIEE  DL   EV G SYSS G FFGFG RLSR   
Sbjct: 3   SSSSSSSSSSAIDGTLRSED---DRIEEGEDLRDEEVGGFSYSSCGCFFGFGSRLSR--- 62

Query: 62  VRCRYVSLQTPQNDEEV-NQSWMMKKVKRFEEIVKAMARSKWRSFINGIVNKRRSVRFQY 121
           VR  Y+ LQ+ +  EEV  QSWMM+KVKR  EI+KAMA  KWRS INGI+NKRRSVRFQY
Sbjct: 63  VRGGYLPLQSNRKSEEVKQQSWMMRKVKRLNEIIKAMAGRKWRSLINGIINKRRSVRFQY 122

Query: 122 DPRSYALNFDHGIGEDGGGGGRHGYSPPSEPPMGLGIRMNRSEI 161
           DPRSYALNFD G+ E+G           S  P+GLGI MNR++I
Sbjct: 123 DPRSYALNFDEGMEEEG---------RRSLQPIGLGIGMNRNQI 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KJS54.7e-7292.55uncharacterized protein LOC111496346 OS=Cucurbita maxima OX=3661 GN=LOC111496346... [more]
A0A6J1BV091.0e-4766.67uncharacterized protein LOC111004972 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A6J1K5B02.3e-4267.33uncharacterized protein LOC111492425 OS=Cucurbita maxima OX=3661 GN=LOC111492425... [more]
A0A5A7VG877.8e-3561.59Stress induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8... [more]
A0A1S3BC687.8e-3561.59uncharacterized protein LOC103488331 OS=Cucumis melo OX=3656 GN=LOC103488331 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..160
NoneNo IPR availablePANTHERPTHR33168:SF46NHL DOMAIN PROTEINcoord: 37..133
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 37..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G003010.1CmoCh12G003010.1mRNA