CmoCh12G002860 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCTCCGAGTGGCTCCTAGCACCAGCATATTGGCACCAGAGACCAAAGACTGCGTCCAGTTCACGAACCAGCTCGCTCAACACCTTCAATGGCGATCTTCCTGGTTGTAGGCCGCCACGAATCGGTTGCGGCGCCGCCAAAATCTCAACTTTTCCCCGACACAAAGGCTCGTGTTCTTGGGCAATTGGTGAAGAATCTACCTCCAATTCTTACGACTTTACGACATGTCGGCTGAACGGGATTGACGTGTCGGTAGATTTCATGATTCACGATAAAGTCTCGGAACAAATAGGGAAATTCAGCAATTGGGTGATTATATAAAAATAAATAGACCATTTTAAAAGGCGGAATATATTCTCAACTTTTAAAATATTTCGACTAAAGCCCGACTGGATTTTATTCGAAGCCTCCTCACTTTCGACGTCACAAGGCAAAGCCGTTGGCTATCAGGGTTTCGGCGGCGCCTTCGCTTTATTGCTCACTGGCCTTCCTCGGTGCGCTTAGGCCTCTCTCCACCGCGATTTAGTGCTTTTCTTTGGCTGGAGACGCGTAAATAGCTCGAATGAGGTGAGTTTCTTGTGTATTTGCTTGTCTTTTCCATTCTCAATGATCATTTAGAGAAACCCCTTTTGGTCAGTGATCGCTCGGAGTAGGGTTTATTGGTCACTTTTTGGTTCTTCCCTTAACTTGTAGGGTAAACAATTAGAATCATTAGCTTTTTCGTGTATGATTTTAAGGGTATTTTACTTTGGTTTTGGAATCTTTAATAGTTGTATTTTTCTTCTTCATCAAGCAAAGTTGAGAGCTCGTTGGTTGGGGGTTTTTAGCCTCAAATCCTTTGATCAAGTTATGGGAAGTTGTTTACGCAGAGAAAGTATGTATTCTAGGTGTTGTCTACTCAGCCGCTTAGAGGGTTGTTCTAGCAAACCCTGTTGCTCGTTTTTACAGTTTTCTGGGAAATATCTGCGGGCTCTTATAGTTTTGGTGGTGGATAATCTCAAGCTTCTTTTTCATGTAAGGATCTTAATTTATGGCTTGGATTAGATATGAATCAGTTTATCTTCGAAGTCTTTGTATTCTGATTTCCTTCTCCCCAGATATGTATAAGTTGCTTGGGGATTTAGCTTCTTCTTCTTCTTTAATTACACTTTTTGGAGGATTGGGTGAGCAGCTTGAGAACCAGGGAGATTAGTAATGGCTAACAAAATTAAGGAGAATGAGTACAATTCCATTGATATCTACGACCGAGATGTAGCTAGGATTACGTAGCTGATAGCTTAAATTTGTGAGATCTCATGGTGGTTGGAGAGGGGAACGAAGCATTCTTTATAAGGGTGTGGAAATCTCTCCCTAGTAGACGCGTTTTAAGACCGTAAGGTTGGCGGTGATATGTAATGGGCCAAAGTGGACAATATTTGCTAGCGGTGGGCTTGGGGTGTTACAAATGGTATTAGAGTCGGACACTGGGCGGTGTGCTAGCGAGGATGCTGGGCCCTCAAGGGGGTGGATTGTGAGATCCTACATCGGTTGGAGAGGGGAACAAAGCATTCCTTATAAGGGTGTGGAAATCTCTCTCTCCCTAGTAGACACGTTTTAAATCCGTGAGGTTGATGGTGATATGTACGGGACAAAGTGGACAATATTTGCTAGCGGTGGGATTGGGCTGTTACAAATGGTATTAGAGTCAAGCACCGGGCGGTGTGCCAACGAGGACGCTGGGCCCTTAAGGGAGTGGATTGTGAGGTTCCACATCGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGTTGTGAAAACTTCTCCCTAGCAGACGTGTTTTAAAACTGTGAGACTGATGGTGATACGTAACGGGCCAAAGTGGACAATATCTGTTAGCGGTGGGCTTGGGCAGCTTAGGCTTGGGCTGTTACAAATGGTATCAGAGCAGACACTGGAAGGTATGCTAACAAGGACGATGGGCCCCAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGGACAAAACATTCTTTATAGGGTGTGAAAACCTCTCCCTAGCAGACGCGTTTTAAAACCATGAGGCTGACAGCGATGCGTAACCGGACAAAGCAAACAATATCTACTAGCGGTGGGCTTGGTCTTGGGCCGTTACAAAATTGTTTGATAATGATATTGTTTTCTATTTTCTTATAATATGTCATAGTATTGATGCAAACTAAAGTATTTACTTTGAAGCTGCATTTTCAGTGGTTTTAGAATTCCTTTCAAGGATTTTATCCAGTTAACTAGAAGCATAGCTATAGAAACCCTTGTATAGAATGGAATTGATCACTTTATGAACTAAACATGGCTTGTACAGAGAAGAAGCTGTCGTGGACGCTGCACTGGACCTGCATTAGGTGATGCAATGGACGGGCCGTCTACTGGTCTGAGAGTCGAAGACCAAGAAGCTAAGAAACAATGCTTACCCGAAAATTTCGCAAGCTCTAGCACGTGTGAAATGGACAACAGTACAGTTTGGTCTCAAAGGAGCATGGCATCAGCTCAGTCGCATGATTCCCATAACAATGTTGGGAGCAGTACAGAGTTTGTAAATTCTGGTAAGTGTGCTTGCCTTGGATCTGCACGGTCTATTCCTTGAACTTTGGCTGTAATCTGTTTGTGGGTAAGGCTCTATTTTTGCTTGTTCTCTCGGTTTTCGTTGAGGATTGTTGGGAGGGAGTCCTACATTGGCTAATTAAGGAGTTGATCGTGGATTTATAAGTAAGGAATACATCTCCATTGGTATGAGGCCTTTTGGGGAAACTAAAAGCAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGATTCGTGATTCCTAACATGGTATTAGAATCATGCCCTTAACTTAGTCATGTCAATAGAATCCTCAAATGTCAAACAGAGAAGTGAGCCTCGAAGATGTAATCAAAAGTGACTCAAGTTTCGAACAAGGGGTGTACTTTGTTCGAGCGCTCCAGAGAAGTCGAGCCTTGATTGAAGGGGGAGGTTGTTTGAGGGCTCCATAGGCCTCAGAGGAGGCTCTATGGTGTGAGGCCCTATGGTGTACTTTGTTCGAGAGGAGAATTGTTGGGAGAGGTGTCCCACGTCGGCTAATTAAGGGGTATATCATGAGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGGCCTTTCAGGAAACCAAAGGGAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGATCCGTGGTTCCTAACATGGTATCAGAATCATGCCCTTAATGTAATCATGTCAATAGAATCTTTAAATGTCAAACAAAGAAGTTTTGAGCCTCGAAGGTGTAGTCAAAAGTGACTCAATTGTCGAACAAAGTGTGTACTTTGTTCGAGTGCTCTAGAAAAGGGGTTGAGCCCACGGCCACTATGATTCCAAATGTTGTGCCTCAACAACTCTGTTGTTTCGGGTTCGGGGTAGATATGAAGGCTTGAATGCTTTTGGGGCTTATTTTTATCTGATACAATCTTGGTTACTAAAAGTAAAACAAAATTCATCATCTGTTCCAATCCTAGTTTTCTGAGCTTAAGCTAACCCGAATAAGCATTAATGATTTCAGGACTACTTCTTTGGAACGAAACCCGGAAGCAATGGGTCGGAAATAAAACGTCCGAGAGCCAAAAGCGAGTTCGAGAACCCAAAATAAGGTAAATGATAAACGTCTAACATAACACGATGCACGAACACAGAACTTGCTGTCAACAAAAATTAAGTATGCGCTGAATTCTTAATCTTCTGCAGTTGGAATGCTACTTACGACAGCTTACTTACGACGAACAAACCATTCCCGGAGGCCATACCTCTAGCTGTAAGTTATCAGCCGCCTTCACTTGTTACCAACTGTAGTTCGTTGTCGAACCCGAATATGACTGTTCTTTTGTATATGAAATGCCAGGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGCCTGTATGACTGAGCCTGCTATTCAAGGGAGTCTCCTATTGCTTAAACTCATGCAGCTCGATTTTTTTCGCTGCCGACCCATATCGTCGATCATGAACAATCGCTCACTGCTTATACTATACGAATGTTAGTGTTTATGTTGAATTTGAGCTACTCGTTATGGGATCGTTTTGAAGGTATAGTTTTTTATGTCGAACTTCTGCTACAACTTTTAAAGGAACAAAAACTTTATAGTTTAAACGTCTTGACTAAACCGTTAGAGGTTC ATGTCCTCCGAGTGGCTCCTAGCACCAGCATATTGGCACCAGAGACCAAAGACTGCGTCCAGTTCACGAACCAGCTCGCTCAACACCTTCAATGGCGATCTTCCTGGTTGTAGGCCGCCACGAATCGGTTGCGGCGCCGCCAAAATCTCAACTTTTCCCCGACACAAAGGCTCGTGTTCTTGGGCAATTGGTGAAGAATCTACCTCCAATTCTTACGACTTTACGACATGTCGGCTGAACGGGATTGACGTGTCGGCCTCTCTCCACCGCGATTTAGTGCTTTTCTTTGGCTGGAGACGCGTAAATAGCTCGAATGAGAGAAGAAGCTGTCGTGGACGCTGCACTGGACCTGCATTAGGTGATGCAATGGACGGGCCGTCTACTGGTCTGAGAGTCGAAGACCAAGAAGCTAAGAAACAATGCTTACCCGAAAATTTCGCAAGCTCTAGCACGTGTGAAATGGACAACAGTACAGTTTGGTCTCAAAGGAGCATGGCATCAGCTCAGTCGCATGATTCCCATAACAATGTTGGGAGCAGTACAGAGTTTGTAAATTCTGGACTACTTCTTTGGAACGAAACCCGGAAGCAATGGGTCGGAAATAAAACGTCCGAGAGCCAAAAGCGAGTTCGAGAACCCAAAATAAGTTGGAATGCTACTTACGACAGCTTACTTACGACGAACAAACCATTCCCGGAGGCCATACCTCTAGCTGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGCCTGTATGACTGAGCCTGCTATTCAAGGGAGTCTCCTATTGCTTAAACTCATGCAGCTCGATTTTTTTCGCTGCCGACCCATATCGTCGATCATGAACAATCGCTCACTGCTTATACTATACGAATGTTAGTGTTTATGTTGAATTTGAGCTACTCGTTATGGGATCGTTTTGAAGGTATAGTTTTTTATGTCGAACTTCTGCTACAACTTTTAAAGGAACAAAAACTTTATAGTTTAAACGTCTTGACTAAACCGTTAGAGGTTC ATGTCCTCCGAGTGGCTCCTAGCACCAGCATATTGGCACCAGAGACCAAAGACTGCGTCCAGTTCACGAACCAGCTCGCTCAACACCTTCAATGGCGATCTTCCTGGTTGTAGGCCGCCACGAATCGGTTGCGGCGCCGCCAAAATCTCAACTTTTCCCCGACACAAAGGCTCGTGTTCTTGGGCAATTGGTGAAGAATCTACCTCCAATTCTTACGACTTTACGACATGTCGGCTGAACGGGATTGACGTGTCGGCCTCTCTCCACCGCGATTTAGTGCTTTTCTTTGGCTGGAGACGCGTAAATAGCTCGAATGAGAGAAGAAGCTGTCGTGGACGCTGCACTGGACCTGCATTAGGTGATGCAATGGACGGGCCGTCTACTGGTCTGAGAGTCGAAGACCAAGAAGCTAAGAAACAATGCTTACCCGAAAATTTCGCAAGCTCTAGCACGTGTGAAATGGACAACAGTACAGTTTGGTCTCAAAGGAGCATGGCATCAGCTCAGTCGCATGATTCCCATAACAATGTTGGGAGCAGTACAGAGTTTGTAAATTCTGGACTACTTCTTTGGAACGAAACCCGGAAGCAATGGGTCGGAAATAAAACGTCCGAGAGCCAAAAGCGAGTTCGAGAACCCAAAATAAGTTGGAATGCTACTTACGACAGCTTACTTACGACGAACAAACCATTCCCGGAGGCCATACCTCTAGCTGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGCCTGTATGACTGA MSSEWLLAPAYWHQRPKTASSSRTSSLNTFNGDLPGCRPPRIGCGAAKISTFPRHKGSCSWAIGEESTSNSYDFTTCRLNGIDVSASLHRDLVLFFGWRRVNSSNERRSCRGRCTGPALGDAMDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMASAQSHDSHNNVGSSTEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLTTNKPFPEAIPLAEMIEFLVDVWEQEGLYD Homology
BLAST of CmoCh12G002860 vs. ExPASy TrEMBL
Match: A0A6J1GIP5 (uncharacterized protein LOC111454240 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454240 PE=4 SV=1) HSP 1 Score: 305.8 bits (782), Expect = 1.7e-79 Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0
BLAST of CmoCh12G002860 vs. ExPASy TrEMBL
Match: A0A6J1KQM2 (uncharacterized protein LOC111496323 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496323 PE=4 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 1.1e-78 Identity = 147/149 (98.66%), Postives = 149/149 (100.00%), Query Frame = 0
BLAST of CmoCh12G002860 vs. ExPASy TrEMBL
Match: A0A6J1GHI7 (uncharacterized protein LOC111454240 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454240 PE=4 SV=1) HSP 1 Score: 271.6 bits (693), Expect = 3.5e-69 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
BLAST of CmoCh12G002860 vs. ExPASy TrEMBL
Match: A0A6J1KLH1 (uncharacterized protein LOC111496323 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496323 PE=4 SV=1) HSP 1 Score: 268.9 bits (686), Expect = 2.2e-68 Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 0
BLAST of CmoCh12G002860 vs. ExPASy TrEMBL
Match: A0A1S3BC47 (uncharacterized protein LOC103488310 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488310 PE=4 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 2.7e-66 Identity = 127/149 (85.23%), Postives = 138/149 (92.62%), Query Frame = 0
BLAST of CmoCh12G002860 vs. TAIR 10
Match: AT5G25360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 162.9 bits (411), Expect = 3.3e-40 Identity = 85/149 (57.05%), Postives = 107/149 (71.81%), Query Frame = 0
BLAST of CmoCh12G002860 vs. TAIR 10
Match: AT5G25360.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). ) HSP 1 Score: 162.9 bits (411), Expect = 3.3e-40 Identity = 85/149 (57.05%), Postives = 107/149 (71.81%), Query Frame = 0
BLAST of CmoCh12G002860 vs. TAIR 10
Match: AT4G32342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 124.8 bits (312), Expect = 1.0e-28 Identity = 78/157 (49.68%), Postives = 100/157 (63.69%), Query Frame = 0
BLAST of CmoCh12G002860 vs. TAIR 10
Match: AT1G15350.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). ) HSP 1 Score: 116.7 bits (291), Expect = 2.7e-26 Identity = 68/138 (49.28%), Postives = 94/138 (68.12%), Query Frame = 0
BLAST of CmoCh12G002860 vs. TAIR 10
Match: AT1G15350.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). ) HSP 1 Score: 116.7 bits (291), Expect = 2.7e-26 Identity = 68/138 (49.28%), Postives = 94/138 (68.12%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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