CmoCh12G002860 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G002860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionAT-rich interactive domain-containing protein
LocationCmo_Chr12: 1814981 .. 1819264 (+)
RNA-Seq ExpressionCmoCh12G002860
SyntenyCmoCh12G002860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCGAGTGGCTCCTAGCACCAGCATATTGGCACCAGAGACCAAAGACTGCGTCCAGTTCACGAACCAGCTCGCTCAACACCTTCAATGGCGATCTTCCTGGTTGTAGGCCGCCACGAATCGGTTGCGGCGCCGCCAAAATCTCAACTTTTCCCCGACACAAAGGCTCGTGTTCTTGGGCAATTGGTGAAGAATCTACCTCCAATTCTTACGACTTTACGACATGTCGGCTGAACGGGATTGACGTGTCGGTAGATTTCATGATTCACGATAAAGTCTCGGAACAAATAGGGAAATTCAGCAATTGGGTGATTATATAAAAATAAATAGACCATTTTAAAAGGCGGAATATATTCTCAACTTTTAAAATATTTCGACTAAAGCCCGACTGGATTTTATTCGAAGCCTCCTCACTTTCGACGTCACAAGGCAAAGCCGTTGGCTATCAGGGTTTCGGCGGCGCCTTCGCTTTATTGCTCACTGGCCTTCCTCGGTGCGCTTAGGCCTCTCTCCACCGCGATTTAGTGCTTTTCTTTGGCTGGAGACGCGTAAATAGCTCGAATGAGGTGAGTTTCTTGTGTATTTGCTTGTCTTTTCCATTCTCAATGATCATTTAGAGAAACCCCTTTTGGTCAGTGATCGCTCGGAGTAGGGTTTATTGGTCACTTTTTGGTTCTTCCCTTAACTTGTAGGGTAAACAATTAGAATCATTAGCTTTTTCGTGTATGATTTTAAGGGTATTTTACTTTGGTTTTGGAATCTTTAATAGTTGTATTTTTCTTCTTCATCAAGCAAAGTTGAGAGCTCGTTGGTTGGGGGTTTTTAGCCTCAAATCCTTTGATCAAGTTATGGGAAGTTGTTTACGCAGAGAAAGTATGTATTCTAGGTGTTGTCTACTCAGCCGCTTAGAGGGTTGTTCTAGCAAACCCTGTTGCTCGTTTTTACAGTTTTCTGGGAAATATCTGCGGGCTCTTATAGTTTTGGTGGTGGATAATCTCAAGCTTCTTTTTCATGTAAGGATCTTAATTTATGGCTTGGATTAGATATGAATCAGTTTATCTTCGAAGTCTTTGTATTCTGATTTCCTTCTCCCCAGATATGTATAAGTTGCTTGGGGATTTAGCTTCTTCTTCTTCTTTAATTACACTTTTTGGAGGATTGGGTGAGCAGCTTGAGAACCAGGGAGATTAGTAATGGCTAACAAAATTAAGGAGAATGAGTACAATTCCATTGATATCTACGACCGAGATGTAGCTAGGATTACGTAGCTGATAGCTTAAATTTGTGAGATCTCATGGTGGTTGGAGAGGGGAACGAAGCATTCTTTATAAGGGTGTGGAAATCTCTCCCTAGTAGACGCGTTTTAAGACCGTAAGGTTGGCGGTGATATGTAATGGGCCAAAGTGGACAATATTTGCTAGCGGTGGGCTTGGGGTGTTACAAATGGTATTAGAGTCGGACACTGGGCGGTGTGCTAGCGAGGATGCTGGGCCCTCAAGGGGGTGGATTGTGAGATCCTACATCGGTTGGAGAGGGGAACAAAGCATTCCTTATAAGGGTGTGGAAATCTCTCTCTCCCTAGTAGACACGTTTTAAATCCGTGAGGTTGATGGTGATATGTACGGGACAAAGTGGACAATATTTGCTAGCGGTGGGATTGGGCTGTTACAAATGGTATTAGAGTCAAGCACCGGGCGGTGTGCCAACGAGGACGCTGGGCCCTTAAGGGAGTGGATTGTGAGGTTCCACATCGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGTTGTGAAAACTTCTCCCTAGCAGACGTGTTTTAAAACTGTGAGACTGATGGTGATACGTAACGGGCCAAAGTGGACAATATCTGTTAGCGGTGGGCTTGGGCAGCTTAGGCTTGGGCTGTTACAAATGGTATCAGAGCAGACACTGGAAGGTATGCTAACAAGGACGATGGGCCCCAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGGACAAAACATTCTTTATAGGGTGTGAAAACCTCTCCCTAGCAGACGCGTTTTAAAACCATGAGGCTGACAGCGATGCGTAACCGGACAAAGCAAACAATATCTACTAGCGGTGGGCTTGGTCTTGGGCCGTTACAAAATTGTTTGATAATGATATTGTTTTCTATTTTCTTATAATATGTCATAGTATTGATGCAAACTAAAGTATTTACTTTGAAGCTGCATTTTCAGTGGTTTTAGAATTCCTTTCAAGGATTTTATCCAGTTAACTAGAAGCATAGCTATAGAAACCCTTGTATAGAATGGAATTGATCACTTTATGAACTAAACATGGCTTGTACAGAGAAGAAGCTGTCGTGGACGCTGCACTGGACCTGCATTAGGTGATGCAATGGACGGGCCGTCTACTGGTCTGAGAGTCGAAGACCAAGAAGCTAAGAAACAATGCTTACCCGAAAATTTCGCAAGCTCTAGCACGTGTGAAATGGACAACAGTACAGTTTGGTCTCAAAGGAGCATGGCATCAGCTCAGTCGCATGATTCCCATAACAATGTTGGGAGCAGTACAGAGTTTGTAAATTCTGGTAAGTGTGCTTGCCTTGGATCTGCACGGTCTATTCCTTGAACTTTGGCTGTAATCTGTTTGTGGGTAAGGCTCTATTTTTGCTTGTTCTCTCGGTTTTCGTTGAGGATTGTTGGGAGGGAGTCCTACATTGGCTAATTAAGGAGTTGATCGTGGATTTATAAGTAAGGAATACATCTCCATTGGTATGAGGCCTTTTGGGGAAACTAAAAGCAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGATTCGTGATTCCTAACATGGTATTAGAATCATGCCCTTAACTTAGTCATGTCAATAGAATCCTCAAATGTCAAACAGAGAAGTGAGCCTCGAAGATGTAATCAAAAGTGACTCAAGTTTCGAACAAGGGGTGTACTTTGTTCGAGCGCTCCAGAGAAGTCGAGCCTTGATTGAAGGGGGAGGTTGTTTGAGGGCTCCATAGGCCTCAGAGGAGGCTCTATGGTGTGAGGCCCTATGGTGTACTTTGTTCGAGAGGAGAATTGTTGGGAGAGGTGTCCCACGTCGGCTAATTAAGGGGTATATCATGAGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGGCCTTTCAGGAAACCAAAGGGAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGATCCGTGGTTCCTAACATGGTATCAGAATCATGCCCTTAATGTAATCATGTCAATAGAATCTTTAAATGTCAAACAAAGAAGTTTTGAGCCTCGAAGGTGTAGTCAAAAGTGACTCAATTGTCGAACAAAGTGTGTACTTTGTTCGAGTGCTCTAGAAAAGGGGTTGAGCCCACGGCCACTATGATTCCAAATGTTGTGCCTCAACAACTCTGTTGTTTCGGGTTCGGGGTAGATATGAAGGCTTGAATGCTTTTGGGGCTTATTTTTATCTGATACAATCTTGGTTACTAAAAGTAAAACAAAATTCATCATCTGTTCCAATCCTAGTTTTCTGAGCTTAAGCTAACCCGAATAAGCATTAATGATTTCAGGACTACTTCTTTGGAACGAAACCCGGAAGCAATGGGTCGGAAATAAAACGTCCGAGAGCCAAAAGCGAGTTCGAGAACCCAAAATAAGGTAAATGATAAACGTCTAACATAACACGATGCACGAACACAGAACTTGCTGTCAACAAAAATTAAGTATGCGCTGAATTCTTAATCTTCTGCAGTTGGAATGCTACTTACGACAGCTTACTTACGACGAACAAACCATTCCCGGAGGCCATACCTCTAGCTGTAAGTTATCAGCCGCCTTCACTTGTTACCAACTGTAGTTCGTTGTCGAACCCGAATATGACTGTTCTTTTGTATATGAAATGCCAGGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGCCTGTATGACTGAGCCTGCTATTCAAGGGAGTCTCCTATTGCTTAAACTCATGCAGCTCGATTTTTTTCGCTGCCGACCCATATCGTCGATCATGAACAATCGCTCACTGCTTATACTATACGAATGTTAGTGTTTATGTTGAATTTGAGCTACTCGTTATGGGATCGTTTTGAAGGTATAGTTTTTTATGTCGAACTTCTGCTACAACTTTTAAAGGAACAAAAACTTTATAGTTTAAACGTCTTGACTAAACCGTTAGAGGTTC

mRNA sequence

ATGTCCTCCGAGTGGCTCCTAGCACCAGCATATTGGCACCAGAGACCAAAGACTGCGTCCAGTTCACGAACCAGCTCGCTCAACACCTTCAATGGCGATCTTCCTGGTTGTAGGCCGCCACGAATCGGTTGCGGCGCCGCCAAAATCTCAACTTTTCCCCGACACAAAGGCTCGTGTTCTTGGGCAATTGGTGAAGAATCTACCTCCAATTCTTACGACTTTACGACATGTCGGCTGAACGGGATTGACGTGTCGGCCTCTCTCCACCGCGATTTAGTGCTTTTCTTTGGCTGGAGACGCGTAAATAGCTCGAATGAGAGAAGAAGCTGTCGTGGACGCTGCACTGGACCTGCATTAGGTGATGCAATGGACGGGCCGTCTACTGGTCTGAGAGTCGAAGACCAAGAAGCTAAGAAACAATGCTTACCCGAAAATTTCGCAAGCTCTAGCACGTGTGAAATGGACAACAGTACAGTTTGGTCTCAAAGGAGCATGGCATCAGCTCAGTCGCATGATTCCCATAACAATGTTGGGAGCAGTACAGAGTTTGTAAATTCTGGACTACTTCTTTGGAACGAAACCCGGAAGCAATGGGTCGGAAATAAAACGTCCGAGAGCCAAAAGCGAGTTCGAGAACCCAAAATAAGTTGGAATGCTACTTACGACAGCTTACTTACGACGAACAAACCATTCCCGGAGGCCATACCTCTAGCTGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGCCTGTATGACTGAGCCTGCTATTCAAGGGAGTCTCCTATTGCTTAAACTCATGCAGCTCGATTTTTTTCGCTGCCGACCCATATCGTCGATCATGAACAATCGCTCACTGCTTATACTATACGAATGTTAGTGTTTATGTTGAATTTGAGCTACTCGTTATGGGATCGTTTTGAAGGTATAGTTTTTTATGTCGAACTTCTGCTACAACTTTTAAAGGAACAAAAACTTTATAGTTTAAACGTCTTGACTAAACCGTTAGAGGTTC

Coding sequence (CDS)

ATGTCCTCCGAGTGGCTCCTAGCACCAGCATATTGGCACCAGAGACCAAAGACTGCGTCCAGTTCACGAACCAGCTCGCTCAACACCTTCAATGGCGATCTTCCTGGTTGTAGGCCGCCACGAATCGGTTGCGGCGCCGCCAAAATCTCAACTTTTCCCCGACACAAAGGCTCGTGTTCTTGGGCAATTGGTGAAGAATCTACCTCCAATTCTTACGACTTTACGACATGTCGGCTGAACGGGATTGACGTGTCGGCCTCTCTCCACCGCGATTTAGTGCTTTTCTTTGGCTGGAGACGCGTAAATAGCTCGAATGAGAGAAGAAGCTGTCGTGGACGCTGCACTGGACCTGCATTAGGTGATGCAATGGACGGGCCGTCTACTGGTCTGAGAGTCGAAGACCAAGAAGCTAAGAAACAATGCTTACCCGAAAATTTCGCAAGCTCTAGCACGTGTGAAATGGACAACAGTACAGTTTGGTCTCAAAGGAGCATGGCATCAGCTCAGTCGCATGATTCCCATAACAATGTTGGGAGCAGTACAGAGTTTGTAAATTCTGGACTACTTCTTTGGAACGAAACCCGGAAGCAATGGGTCGGAAATAAAACGTCCGAGAGCCAAAAGCGAGTTCGAGAACCCAAAATAAGTTGGAATGCTACTTACGACAGCTTACTTACGACGAACAAACCATTCCCGGAGGCCATACCTCTAGCTGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGCCTGTATGACTGA

Protein sequence

MSSEWLLAPAYWHQRPKTASSSRTSSLNTFNGDLPGCRPPRIGCGAAKISTFPRHKGSCSWAIGEESTSNSYDFTTCRLNGIDVSASLHRDLVLFFGWRRVNSSNERRSCRGRCTGPALGDAMDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMASAQSHDSHNNVGSSTEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLTTNKPFPEAIPLAEMIEFLVDVWEQEGLYD
Homology
BLAST of CmoCh12G002860 vs. ExPASy TrEMBL
Match: A0A6J1GIP5 (uncharacterized protein LOC111454240 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454240 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.7e-79
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0

Query: 107 RRSCRGRCTGPALGDAMDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMA 166
           RRSCRGRCTGPALGDAMDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMA
Sbjct: 56  RRSCRGRCTGPALGDAMDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMA 115

Query: 167 SAQSHDSHNNVGSSTEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLT 226
           SAQSHDSHNNVGSSTEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLT
Sbjct: 116 SAQSHDSHNNVGSSTEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLT 175

Query: 227 TNKPFPEAIPLAEMIEFLVDVWEQEGLYD 256
           TNKPFPEAIPLAEMIEFLVDVWEQEGLYD
Sbjct: 176 TNKPFPEAIPLAEMIEFLVDVWEQEGLYD 204

BLAST of CmoCh12G002860 vs. ExPASy TrEMBL
Match: A0A6J1KQM2 (uncharacterized protein LOC111496323 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496323 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.1e-78
Identity = 147/149 (98.66%), Postives = 149/149 (100.00%), Query Frame = 0

Query: 107 RRSCRGRCTGPALGDAMDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMA 166
           RRSCRGRCTGPALGDAMDGPSTGLRV+DQEAKKQCLP+NFASSSTCEMDNSTVWSQRSMA
Sbjct: 56  RRSCRGRCTGPALGDAMDGPSTGLRVDDQEAKKQCLPKNFASSSTCEMDNSTVWSQRSMA 115

Query: 167 SAQSHDSHNNVGSSTEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLT 226
           SAQSHDSHNNVGSSTEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLT
Sbjct: 116 SAQSHDSHNNVGSSTEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLT 175

Query: 227 TNKPFPEAIPLAEMIEFLVDVWEQEGLYD 256
           TNKPFPEAIPLAEMIEFLVDVWEQEGLYD
Sbjct: 176 TNKPFPEAIPLAEMIEFLVDVWEQEGLYD 204

BLAST of CmoCh12G002860 vs. ExPASy TrEMBL
Match: A0A6J1GHI7 (uncharacterized protein LOC111454240 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454240 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 3.5e-69
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query: 123 MDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMASAQSHDSHNNVGSSTE 182
           MDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMASAQSHDSHNNVGSSTE
Sbjct: 1   MDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMASAQSHDSHNNVGSSTE 60

Query: 183 FVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLTTNKPFPEAIPLAEMIE 242
           FVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLTTNKPFPEAIPLAEMIE
Sbjct: 61  FVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLTTNKPFPEAIPLAEMIE 120

Query: 243 FLVDVWEQEGLYD 256
           FLVDVWEQEGLYD
Sbjct: 121 FLVDVWEQEGLYD 133

BLAST of CmoCh12G002860 vs. ExPASy TrEMBL
Match: A0A6J1KLH1 (uncharacterized protein LOC111496323 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496323 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 2.2e-68
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 0

Query: 123 MDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMASAQSHDSHNNVGSSTE 182
           MDGPSTGLRV+DQEAKKQCLP+NFASSSTCEMDNSTVWSQRSMASAQSHDSHNNVGSSTE
Sbjct: 1   MDGPSTGLRVDDQEAKKQCLPKNFASSSTCEMDNSTVWSQRSMASAQSHDSHNNVGSSTE 60

Query: 183 FVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLTTNKPFPEAIPLAEMIE 242
           FVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLTTNKPFPEAIPLAEMIE
Sbjct: 61  FVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLTTNKPFPEAIPLAEMIE 120

Query: 243 FLVDVWEQEGLYD 256
           FLVDVWEQEGLYD
Sbjct: 121 FLVDVWEQEGLYD 133

BLAST of CmoCh12G002860 vs. ExPASy TrEMBL
Match: A0A1S3BC47 (uncharacterized protein LOC103488310 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488310 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.7e-66
Identity = 127/149 (85.23%), Postives = 138/149 (92.62%), Query Frame = 0

Query: 107 RRSCRGRCTGPALGDAMDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMA 166
           +R   G C+  ALG+AMDGPS GLRV+D+EAKKQCLPENF SSSTCEMDNSTVWSQRSMA
Sbjct: 48  KRRREGCCSASALGNAMDGPSKGLRVKDKEAKKQCLPENFPSSSTCEMDNSTVWSQRSMA 107

Query: 167 SAQSHDSHNNVGSSTEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLT 226
           SAQSHDS +N+GSST+FVNSGLLLWNETRKQWVGNK S+SQK+V+EPKISWNATYDSLLT
Sbjct: 108 SAQSHDSQSNIGSSTDFVNSGLLLWNETRKQWVGNKMSKSQKQVQEPKISWNATYDSLLT 167

Query: 227 TNKPFPEAIPLAEMIEFLVDVWEQEGLYD 256
           TNKPFPEAIPL EMIEFLVDVWEQEGLYD
Sbjct: 168 TNKPFPEAIPLTEMIEFLVDVWEQEGLYD 196

BLAST of CmoCh12G002860 vs. TAIR 10
Match: AT5G25360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 162.9 bits (411), Expect = 3.3e-40
Identity = 85/149 (57.05%), Postives = 107/149 (71.81%), Query Frame = 0

Query: 110 CRGRCTGPALGDAMDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMASAQ 169
           C G C  P L  A+D PS GLR++ +  KK  + E+F S+STCEMDNST+ SQRSM+S  
Sbjct: 21  CFGCCNKPPLIVAVDEPSKGLRIQGRLVKKPSVSEDFWSTSTCEMDNSTLQSQRSMSSIS 80

Query: 170 SHDSHNNVGSS---TEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLT 229
             ++ +   S+   TEFVN GL LWN+TR+QW+ N TS+ + +VREP ISWNATY+SLL 
Sbjct: 81  FTNNTSTSASTSNPTEFVNHGLNLWNQTRQQWLANGTSQKKAKVREPTISWNATYESLLG 140

Query: 230 TNKPFPEAIPLAEMIEFLVDVWEQEGLYD 256
            NK F   IPL EM++FLVDVWEQEGLYD
Sbjct: 141 MNKRFSRPIPLPEMVDFLVDVWEQEGLYD 169

BLAST of CmoCh12G002860 vs. TAIR 10
Match: AT5G25360.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). )

HSP 1 Score: 162.9 bits (411), Expect = 3.3e-40
Identity = 85/149 (57.05%), Postives = 107/149 (71.81%), Query Frame = 0

Query: 110 CRGRCTGPALGDAMDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMASAQ 169
           C G C  P L  A+D PS GLR++ +  KK  + E+F S+STCEMDNST+ SQRSM+S  
Sbjct: 21  CFGCCNKPPLIVAVDEPSKGLRIQGRLVKKPSVSEDFWSTSTCEMDNSTLQSQRSMSSIS 80

Query: 170 SHDSHNNVGSS---TEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLT 229
             ++ +   S+   TEFVN GL LWN+TR+QW+ N TS+ + +VREP ISWNATY+SLL 
Sbjct: 81  FTNNTSTSASTSNPTEFVNHGLNLWNQTRQQWLANGTSQKKAKVREPTISWNATYESLLG 140

Query: 230 TNKPFPEAIPLAEMIEFLVDVWEQEGLYD 256
            NK F   IPL EM++FLVDVWEQEGLYD
Sbjct: 141 MNKRFSRPIPLPEMVDFLVDVWEQEGLYD 169

BLAST of CmoCh12G002860 vs. TAIR 10
Match: AT4G32342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-28
Identity = 78/157 (49.68%), Postives = 100/157 (63.69%), Query Frame = 0

Query: 101 VNSSNERRSCRGRCTGP-ALGDAMDGPSTGLRVEDQEAKK-QCLPENFASSSTCEMD-NS 160
           +NS N    C G C     L   +D PS GL+++ +  KK     ++F S+STC+MD N 
Sbjct: 12  INSIN----CFGCCNRERRLVVEVDEPSKGLKIQGKIVKKDSASSDDFWSTSTCDMDHNI 71

Query: 161 TVWSQRSMASAQSHDSHNNVGSSTEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISW 220
           T+ SQ   +S    D   +  +STEFVN GL+LWN TR+QW    T + Q  V EP ISW
Sbjct: 72  TIQSQ---SSNPPFDPQCSTSNSTEFVNHGLILWNHTRQQWRECLTRQ-QCLVPEPAISW 131

Query: 221 NATYDSLLTTNKPFPEAIPLAEMIEFLVDVWEQEGLY 255
           N+TYDSLL+TNK FP+ IPL EM+ FLVDVWE+EGLY
Sbjct: 132 NSTYDSLLSTNKLFPQPIPLKEMVHFLVDVWEEEGLY 160

BLAST of CmoCh12G002860 vs. TAIR 10
Match: AT1G15350.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 116.7 bits (291), Expect = 2.7e-26
Identity = 68/138 (49.28%), Postives = 94/138 (68.12%), Query Frame = 0

Query: 124 DGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMASA-QSHDSHN---NVGS 183
           D PS  +    +  KK  + E+F S+ST +MDN T  SQ S++S+ Q+ DS +   N  +
Sbjct: 20  DPPSNSIA---RPCKKPSVSEDFWSTSTVDMDNITFPSQGSLSSSNQTFDSQSAARNSNA 79

Query: 184 STEFVNSGLLLWNETRKQWVG-NKTSESQKRVREPKISWN-ATYDSLLTTNKPFPEAIPL 243
             E+VN GLLLWN+TR++WVG +K +      +  K++WN ATYDSLL +NK FP+ IPL
Sbjct: 80  PPEYVNQGLLLWNQTRERWVGKDKPNNPVDHNQGAKLNWNTATYDSLLGSNKLFPQPIPL 139

Query: 244 AEMIEFLVDVWEQEGLYD 256
            EM++FLVD+WEQEGLYD
Sbjct: 140 TEMVDFLVDIWEQEGLYD 154

BLAST of CmoCh12G002860 vs. TAIR 10
Match: AT1G15350.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 116.7 bits (291), Expect = 2.7e-26
Identity = 68/138 (49.28%), Postives = 94/138 (68.12%), Query Frame = 0

Query: 124 DGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMASA-QSHDSHN---NVGS 183
           D PS  +    +  KK  + E+F S+ST +MDN T  SQ S++S+ Q+ DS +   N  +
Sbjct: 20  DPPSNSIA---RPCKKPSVSEDFWSTSTVDMDNITFPSQGSLSSSNQTFDSQSAARNSNA 79

Query: 184 STEFVNSGLLLWNETRKQWVG-NKTSESQKRVREPKISWN-ATYDSLLTTNKPFPEAIPL 243
             E+VN GLLLWN+TR++WVG +K +      +  K++WN ATYDSLL +NK FP+ IPL
Sbjct: 80  PPEYVNQGLLLWNQTRERWVGKDKPNNPVDHNQGAKLNWNTATYDSLLGSNKLFPQPIPL 139

Query: 244 AEMIEFLVDVWEQEGLYD 256
            EM++FLVD+WEQEGLYD
Sbjct: 140 TEMVDFLVDIWEQEGLYD 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GIP51.7e-79100.00uncharacterized protein LOC111454240 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1KQM21.1e-7898.66uncharacterized protein LOC111496323 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1GHI73.5e-69100.00uncharacterized protein LOC111454240 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1KLH12.2e-6898.50uncharacterized protein LOC111496323 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A1S3BC472.7e-6685.23uncharacterized protein LOC103488310 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
AT5G25360.13.3e-4057.05unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G25360.23.3e-4057.05unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G32342.11.0e-2849.68unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G15350.22.7e-2649.28unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G15350.12.7e-2649.28unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025124Domain of unknown function DUF4050PFAMPF13259DUF4050coord: 214..255
e-value: 1.2E-12
score: 48.5
coord: 150..213
e-value: 5.1E-8
score: 33.5
NoneNo IPR availablePANTHERPTHR33373:SF15DUF4050 FAMILY PROTEINcoord: 103..255
NoneNo IPR availablePANTHERPTHR33373OS07G0479600 PROTEINcoord: 103..255

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G002860.1CmoCh12G002860.1mRNA