CmoCh12G002840 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G002840
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRho guanine nucleotide exchange factor
LocationCmo_Chr12: 1806590 .. 1807459 (-)
RNA-Seq ExpressionCmoCh12G002840
SyntenyCmoCh12G002840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCATAAGCTTAGAAGAGCTTCACCTCTACCACGCCATTGATAGAGAGCTCTTCTCCCGTTTGATGATCAACCTCTCACGAGATCCCGCCCAGTCTCTTCTAATCATTTCCCTTTGGCTATGGCTCGAAGAACAGGGCTTCACCAATTTCATTTTCAAAATCATCCCTTTCCCCGACCACTTCATCAATTCCTTAGCTAATGAAGCTCTTTTCTGTCTCAACTCACTCGTTTTCGATTCCCGACACGGCGGTGGGCCCCACCCTACTCTCCTTCCGCCTGTCTTTCCGGCCACCTCCTTGGTGGCCGGAACAGAAATCTCAGTTGTGTTGTTCATACGAAACCGGTTCAGAGCAATCAGTGGAGTTAAGTACTTTCTCACCAATGTCTGTTCTCGGGTTTTTACTGACATTTTGGAGACTGTGTTGGGAAGAACCGATTCTCAATCGGATGCGGCTTTAGTGATTAATGGGTTTCCACATCCGGTTTTTGGTTCGATCACAATTGTCCCTAAATGTTTGAACCATACTTTTCCGACCGGTCGGTTATGGGAGTGGCGAATGTCGGACGGCGGCATAGTGGAAGACGACCGGACTCTGTTTCTGACATTTTCGCGGGGGTTTCCGGTGTCGGCGGAGGAAATAAAGGGGCTTTTTACAGAGGCGTTTGGGGAGTGCGTTGTGGGTATTCAGATGGAGTTGGTTCCGGTCGGCGAGCAGCCGCTGTACGCTCGAGTGGTGATGAGTTCGGTGGTGGCGGTGGATCGGATCCTCGACGGGAAGCGAATTGCTAAGTTTCGTACTAATGGTAAGCATATTTGGGCTCGGAAATATGAACGGAGATCGGAATTATTGACCGGAAAGTGA

mRNA sequence

ATGGCCTCCATAAGCTTAGAAGAGCTTCACCTCTACCACGCCATTGATAGAGAGCTCTTCTCCCGTTTGATGATCAACCTCTCACGAGATCCCGCCCAGTCTCTTCTAATCATTTCCCTTTGGCTATGGCTCGAAGAACAGGGCTTCACCAATTTCATTTTCAAAATCATCCCTTTCCCCGACCACTTCATCAATTCCTTAGCTAATGAAGCTCTTTTCTGTCTCAACTCACTCGTTTTCGATTCCCGACACGGCGGTGGGCCCCACCCTACTCTCCTTCCGCCTGTCTTTCCGGCCACCTCCTTGGTGGCCGGAACAGAAATCTCAGTTGTGTTGTTCATACGAAACCGGTTCAGAGCAATCAGTGGAGTTAAGTACTTTCTCACCAATGTCTGTTCTCGGGTTTTTACTGACATTTTGGAGACTGTGTTGGGAAGAACCGATTCTCAATCGGATGCGGCTTTAGTGATTAATGGGTTTCCACATCCGGTTTTTGGTTCGATCACAATTGTCCCTAAATGTTTGAACCATACTTTTCCGACCGGTCGGTTATGGGAGTGGCGAATGTCGGACGGCGGCATAGTGGAAGACGACCGGACTCTGTTTCTGACATTTTCGCGGGGGTTTCCGGTGTCGGCGGAGGAAATAAAGGGGCTTTTTACAGAGGCGTTTGGGGAGTGCGTTGTGGGTATTCAGATGGAGTTGGTTCCGGTCGGCGAGCAGCCGCTGTACGCTCGAGTGGTGATGAGTTCGGTGGTGGCGGTGGATCGGATCCTCGACGGGAAGCGAATTGCTAAGTTTCGTACTAATGGTAAGCATATTTGGGCTCGGAAATATGAACGGAGATCGGAATTATTGACCGGAAAGTGA

Coding sequence (CDS)

ATGGCCTCCATAAGCTTAGAAGAGCTTCACCTCTACCACGCCATTGATAGAGAGCTCTTCTCCCGTTTGATGATCAACCTCTCACGAGATCCCGCCCAGTCTCTTCTAATCATTTCCCTTTGGCTATGGCTCGAAGAACAGGGCTTCACCAATTTCATTTTCAAAATCATCCCTTTCCCCGACCACTTCATCAATTCCTTAGCTAATGAAGCTCTTTTCTGTCTCAACTCACTCGTTTTCGATTCCCGACACGGCGGTGGGCCCCACCCTACTCTCCTTCCGCCTGTCTTTCCGGCCACCTCCTTGGTGGCCGGAACAGAAATCTCAGTTGTGTTGTTCATACGAAACCGGTTCAGAGCAATCAGTGGAGTTAAGTACTTTCTCACCAATGTCTGTTCTCGGGTTTTTACTGACATTTTGGAGACTGTGTTGGGAAGAACCGATTCTCAATCGGATGCGGCTTTAGTGATTAATGGGTTTCCACATCCGGTTTTTGGTTCGATCACAATTGTCCCTAAATGTTTGAACCATACTTTTCCGACCGGTCGGTTATGGGAGTGGCGAATGTCGGACGGCGGCATAGTGGAAGACGACCGGACTCTGTTTCTGACATTTTCGCGGGGGTTTCCGGTGTCGGCGGAGGAAATAAAGGGGCTTTTTACAGAGGCGTTTGGGGAGTGCGTTGTGGGTATTCAGATGGAGTTGGTTCCGGTCGGCGAGCAGCCGCTGTACGCTCGAGTGGTGATGAGTTCGGTGGTGGCGGTGGATCGGATCCTCGACGGGAAGCGAATTGCTAAGTTTCGTACTAATGGTAAGCATATTTGGGCTCGGAAATATGAACGGAGATCGGAATTATTGACCGGAAAGTGA

Protein sequence

MASISLEELHLYHAIDRELFSRLMINLSRDPAQSLLIISLWLWLEEQGFTNFIFKIIPFPDHFINSLANEALFCLNSLVFDSRHGGGPHPTLLPPVFPATSLVAGTEISVVLFIRNRFRAISGVKYFLTNVCSRVFTDILETVLGRTDSQSDAALVINGFPHPVFGSITIVPKCLNHTFPTGRLWEWRMSDGGIVEDDRTLFLTFSRGFPVSAEEIKGLFTEAFGECVVGIQMELVPVGEQPLYARVVMSSVVAVDRILDGKRIAKFRTNGKHIWARKYERRSELLTGK
Homology
BLAST of CmoCh12G002840 vs. ExPASy TrEMBL
Match: A0A6J1GHL8 (uncharacterized protein LOC111454239 OS=Cucurbita moschata OX=3662 GN=LOC111454239 PE=4 SV=1)

HSP 1 Score: 584.7 bits (1506), Expect = 2.1e-163
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0

Query: 1   MASISLEELHLYHAIDRELFSRLMINLSRDPAQSLLIISLWLWLEEQGFTNFIFKIIPFP 60
           MASISLEELHLYHAIDRELFSRLMINLSRDPAQSLLIISLWLWLEEQGFTNFIFKIIPFP
Sbjct: 1   MASISLEELHLYHAIDRELFSRLMINLSRDPAQSLLIISLWLWLEEQGFTNFIFKIIPFP 60

Query: 61  DHFINSLANEALFCLNSLVFDSRHGGGPHPTLLPPVFPATSLVAGTEISVVLFIRNRFRA 120
           DHFINSLANEALFCLNSLVFDSRHGGGPHPTLLPPVFPATSLVAGTEISVVLFIRNRFRA
Sbjct: 61  DHFINSLANEALFCLNSLVFDSRHGGGPHPTLLPPVFPATSLVAGTEISVVLFIRNRFRA 120

Query: 121 ISGVKYFLTNVCSRVFTDILETVLGRTDSQSDAALVINGFPHPVFGSITIVPKCLNHTFP 180
           ISGVKYFLTNVCSRVFTDILETVLGRTDSQSDAALVINGFPHPVFGSITIVPKCLNHTFP
Sbjct: 121 ISGVKYFLTNVCSRVFTDILETVLGRTDSQSDAALVINGFPHPVFGSITIVPKCLNHTFP 180

Query: 181 TGRLWEWRMSDGGIVEDDRTLFLTFSRGFPVSAEEIKGLFTEAFGECVVGIQMELVPVGE 240
           TGRLWEWRMSDGGIVEDDRTLFLTFSRGFPVSAEEIKGLFTEAFGECVVGIQMELVPVGE
Sbjct: 181 TGRLWEWRMSDGGIVEDDRTLFLTFSRGFPVSAEEIKGLFTEAFGECVVGIQMELVPVGE 240

Query: 241 QPLYARVVMSSVVAVDRILDGKRIAKFRTNGKHIWARKYERRSELLTGK 290
           QPLYARVVMSSVVAVDRILDGKRIAKFRTNGKHIWARKYERRSELLTGK
Sbjct: 241 QPLYARVVMSSVVAVDRILDGKRIAKFRTNGKHIWARKYERRSELLTGK 289

BLAST of CmoCh12G002840 vs. ExPASy TrEMBL
Match: A0A6J1KUV7 (uncharacterized protein LOC111496620 OS=Cucurbita maxima OX=3661 GN=LOC111496620 PE=4 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 2.9e-157
Identity = 277/289 (95.85%), Postives = 284/289 (98.27%), Query Frame = 0

Query: 1   MASISLEELHLYHAIDRELFSRLMINLSRDPAQSLLIISLWLWLEEQGFTNFIFKIIPFP 60
           MASISLEELHLYHAIDRELFSRL+INLS DPAQSLLIISLWLWLEEQGFTNFIFKIIPFP
Sbjct: 1   MASISLEELHLYHAIDRELFSRLLINLSLDPAQSLLIISLWLWLEEQGFTNFIFKIIPFP 60

Query: 61  DHFINSLANEALFCLNSLVFDSRHGGGPHPTLLPPVFPATSLVAGTEISVVLFIRNRFRA 120
           DHFINSLANEALFCLNSL FDSRHGGGP PTLLPPVFPATSLVAGTEIS+VLFIRNRFRA
Sbjct: 61  DHFINSLANEALFCLNSLDFDSRHGGGPRPTLLPPVFPATSLVAGTEISIVLFIRNRFRA 120

Query: 121 ISGVKYFLTNVCSRVFTDILETVLGRTDSQSDAALVINGFPHPVFGSITIVPKCLNHTFP 180
           ISGVKYFLTNVCSRVFTDILETVLGRTDSQSDAALVINGFPHPVFGSI IVPKCL+HTFP
Sbjct: 121 ISGVKYFLTNVCSRVFTDILETVLGRTDSQSDAALVINGFPHPVFGSIRIVPKCLDHTFP 180

Query: 181 TGRLWEWRMSDGGIVEDDRTLFLTFSRGFPVSAEEIKGLFTEAFGECVVGIQMELVPVGE 240
           TGRLWEWRMSDGGIVEDDRTLFLTFSRGFPV+ EEIKG+FTEAFG+CVVGIQMELVPVGE
Sbjct: 181 TGRLWEWRMSDGGIVEDDRTLFLTFSRGFPVTTEEIKGVFTEAFGDCVVGIQMELVPVGE 240

Query: 241 QPLYARVVMSSVVAVDRILDGKRIAKFRTNGKHIWARKYERRSELLTGK 290
           QPLYAR+VMSSVVAVDRILDGKRIAKFRTNGKHIWARKYERRSELLTGK
Sbjct: 241 QPLYARMVMSSVVAVDRILDGKRIAKFRTNGKHIWARKYERRSELLTGK 289

BLAST of CmoCh12G002840 vs. ExPASy TrEMBL
Match: A0A5A7VHI7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002470 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 3.0e-117
Identity = 214/286 (74.83%), Postives = 243/286 (84.97%), Query Frame = 0

Query: 1   MASISLEELHLYHAIDRELFSRLMINLSRDPAQSLLIISLWLWLEEQGFTNFIFKIIPFP 60
           M SISLEELHLYH+IDRE+FSRL+I LSRDPAQSLLIISLWLWLEEQGFTNFIF+I+P  
Sbjct: 1   MTSISLEELHLYHSIDREIFSRLLIKLSRDPAQSLLIISLWLWLEEQGFTNFIFRIMPLS 60

Query: 61  DHFINSLANEALFCLNSLVFDSRHGGGPHPTLLPPVFPATSLVAGTEISVVLFIRNRFRA 120
           D  +NSLANEA+FCL S +  + H G PHPT+L    PATS   G EI V +F++NRFRA
Sbjct: 61  DPSLNSLANEAVFCL-SCLDSTNHPGLPHPTVL----PATSKAGGREIPVEMFVQNRFRA 120

Query: 121 ISGVKYFLTNVCSRVFTDILETVLGRTDSQSDAALVINGFPHPVFGSITIVPKCLNHTFP 180
           ISGVKYFLTNVC+R+FTDILE VLGR +SQS+ ALVI+GFPHP+FGSITI+PK L+  FP
Sbjct: 121 ISGVKYFLTNVCARIFTDILEIVLGRNNSQSNEALVIHGFPHPIFGSITIIPKSLDQDFP 180

Query: 181 TGRLWEWRMSDGGIVEDDRTLFLTFSRGFPVSAEEIKGLFTEAFGECVVGIQMELVPVGE 240
           TG LW W  +D G+ EDDRTLFLTFSRGFPV+AEE+KGLF +AFG+CV  IQME V  GE
Sbjct: 181 TGGLWGWPSADAGMSEDDRTLFLTFSRGFPVTAEEVKGLFVQAFGDCVESIQMEEVEAGE 240

Query: 241 QPLYARVVMSSVVAVDRILDGKRIAKFRTNGKHIWARKYERRSELL 287
           QPLYAR+VMSSVV VD+ILDGKRIAKFR NGKHIWARKYERRSELL
Sbjct: 241 QPLYARMVMSSVVPVDQILDGKRIAKFRINGKHIWARKYERRSELL 281

BLAST of CmoCh12G002840 vs. ExPASy TrEMBL
Match: A0A1S3BCV6 (uncharacterized protein LOC103488307 OS=Cucumis melo OX=3656 GN=LOC103488307 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 3.0e-117
Identity = 214/286 (74.83%), Postives = 243/286 (84.97%), Query Frame = 0

Query: 1   MASISLEELHLYHAIDRELFSRLMINLSRDPAQSLLIISLWLWLEEQGFTNFIFKIIPFP 60
           M SISLEELHLYH+IDRE+FSRL+I LSRDPAQSLLIISLWLWLEEQGFTNFIF+I+P  
Sbjct: 1   MTSISLEELHLYHSIDREIFSRLLIKLSRDPAQSLLIISLWLWLEEQGFTNFIFRIMPLS 60

Query: 61  DHFINSLANEALFCLNSLVFDSRHGGGPHPTLLPPVFPATSLVAGTEISVVLFIRNRFRA 120
           D  +NSLANEA+FCL S +  + H G PHPT+L    PATS   G EI V +F++NRFRA
Sbjct: 61  DPSLNSLANEAVFCL-SCLDSTNHPGLPHPTVL----PATSKAGGREIPVEMFVQNRFRA 120

Query: 121 ISGVKYFLTNVCSRVFTDILETVLGRTDSQSDAALVINGFPHPVFGSITIVPKCLNHTFP 180
           ISGVKYFLTNVC+R+FTDILE VLGR +SQS+ ALVI+GFPHP+FGSITI+PK L+  FP
Sbjct: 121 ISGVKYFLTNVCARIFTDILEIVLGRNNSQSNEALVIHGFPHPIFGSITIIPKSLDQDFP 180

Query: 181 TGRLWEWRMSDGGIVEDDRTLFLTFSRGFPVSAEEIKGLFTEAFGECVVGIQMELVPVGE 240
           TG LW W  +D G+ EDDRTLFLTFSRGFPV+AEE+KGLF +AFG+CV  IQME V  GE
Sbjct: 181 TGGLWGWPSADAGMSEDDRTLFLTFSRGFPVTAEEVKGLFVQAFGDCVESIQMEEVEAGE 240

Query: 241 QPLYARVVMSSVVAVDRILDGKRIAKFRTNGKHIWARKYERRSELL 287
           QPLYAR+VMSSVV VD+ILDGKRIAKFR NGKHIWARKYERRSELL
Sbjct: 241 QPLYARMVMSSVVPVDQILDGKRIAKFRINGKHIWARKYERRSELL 281

BLAST of CmoCh12G002840 vs. ExPASy TrEMBL
Match: A0A0A0LLY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381710 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 4.7e-115
Identity = 213/287 (74.22%), Postives = 242/287 (84.32%), Query Frame = 0

Query: 1   MASISLEELHLYHAIDRELFSRLMINLSRDPAQSLLIISLWLWLEEQGFTNFIFKIIPFP 60
           M SISLEELHLYH+IDRE+FSRL+I LSRDPAQSLLIISLWLWLEEQG TNFIF+I+P  
Sbjct: 1   MPSISLEELHLYHSIDREIFSRLLIQLSRDPAQSLLIISLWLWLEEQGVTNFIFRIMPLS 60

Query: 61  DHFINSLANEALFCLNSLVFDSRHGGG-PHPTLLPPVFPATSLVAGTEISVVLFIRNRFR 120
           D  +NSLANEA+FCL+ L  DS +  G PHPT    V PATS  AG +I V +F++NRFR
Sbjct: 61  DPSLNSLANEAVFCLSCL--DSNNQPGCPHPT---TVLPATSKAAGRDIPVEMFVQNRFR 120

Query: 121 AISGVKYFLTNVCSRVFTDILETVLGRTDSQSDAALVINGFPHPVFGSITIVPKCLNHTF 180
           AISGVKYFLTNVC+R+FTDILE VLGR +SQ + ALVI+GFPHP+FGSITI+PK L+  F
Sbjct: 121 AISGVKYFLTNVCARIFTDILEIVLGRNNSQPNEALVIHGFPHPIFGSITIIPKSLDQDF 180

Query: 181 PTGRLWEWRMSDGGIVEDDRTLFLTFSRGFPVSAEEIKGLFTEAFGECVVGIQMELVPVG 240
           PTG LW W  +D G+ EDDRTLFLTFSRGFPV+AEE+KGLF +AFG+CV  IQME V  G
Sbjct: 181 PTGGLWGWPSADAGMSEDDRTLFLTFSRGFPVTAEEVKGLFVQAFGDCVESIQMEEVEAG 240

Query: 241 EQPLYARVVMSSVVAVDRILDGKRIAKFRTNGKHIWARKYERRSELL 287
           EQPLYAR+VMSSVV VD+ILDGKRIAKFR NGKHIWARKYERRSELL
Sbjct: 241 EQPLYARMVMSSVVPVDQILDGKRIAKFRINGKHIWARKYERRSELL 282

BLAST of CmoCh12G002840 vs. TAIR 10
Match: AT1G64870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45200.1); Has 99 Blast hits to 91 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 213.0 bits (541), Expect = 3.2e-55
Identity = 125/310 (40.32%), Postives = 176/310 (56.77%), Query Frame = 0

Query: 1   MASISLEELHLYHAIDRELFSRLMINLSRDPAQSLLIISLWLWLEEQGFTNFIFKIIPFP 60
           M+  ++E+LH +HA +RE+FS+L+  L R PA+SLL+++ WLW E+ GF N    I  F 
Sbjct: 1   MSHPTVEQLHAFHAQEREIFSKLVQKLRRPPAESLLVMATWLWFEDFGFGNIFSIITVFS 60

Query: 61  DHFINSLANEALFCLNSLVFDSRHGGGPHPTLLPPVFPATSLVAGTEISVVLFIRNRFRA 120
           D  I  LANEA+ C   L  D        P       P T      +IS+ +   +R+ A
Sbjct: 61  DLLIVDLANEAVLCFRCLESD-------QPPNDVSQIPLTERFMKNDISLQIIHNHRYTA 120

Query: 121 ISGVKYFLTNVCSRVFTDILETVLGRTDSQSDA----ALVINGFPHPVFGSITIVPKCL- 180
           I+G+K FLT +CSR+F+DIL+ VL  + S         L+I GFPHP FGSI ++P  + 
Sbjct: 121 ITGIKNFLTTICSRIFSDILQRVLPSSSSSFITNLRHPLIIPGFPHPTFGSINVLPNIVA 180

Query: 181 --------NHTFPTGRLWEWRMSDGGIVEDDRTLFLTFSRGFPVSAEEIKGLFTEAFGE- 240
                   +  FP G LW W  ++    + +RT+FLTFSRGFPVS  E+  LFTE +GE 
Sbjct: 181 RDNLPNANSFLFPHG-LWGWN-ANHVATDKERTVFLTFSRGFPVSHAEVIHLFTEIYGED 240

Query: 241 CVVGIQM------------ELVPVGEQPLYARVVMSSVVAVDRILDGKRIAKFRTNGKHI 285
           CV  + M                  +QPL+A++V+ SVV VDRIL G+   K++ NGKHI
Sbjct: 241 CVESVYMPEDGGNSSNDNTNCNGHQQQPLFAKMVLDSVVTVDRILSGQEKQKYKINGKHI 300

BLAST of CmoCh12G002840 vs. TAIR 10
Match: AT3G45200.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64870.1); Has 95 Blast hits to 91 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 212.2 bits (539), Expect = 5.4e-55
Identity = 126/311 (40.51%), Postives = 180/311 (57.88%), Query Frame = 0

Query: 1   MASISLEELHLYHAIDRELFSRLMINLSRDPAQSLLIISLWLWLEEQGFTNFIFKIIPFP 60
           M+ ++ +ELH++HA DRE+FS+L++  SR PA+SLL+++ WLWLE+ GF N    I+   
Sbjct: 1   MSLLNAQELHVFHAQDREIFSKLVLKFSRPPAESLLVMATWLWLEDFGFENIFSIILTLT 60

Query: 61  DHFINSLANEALFCLNSLVFDSRHGGGPHPTLLPPV--FPATSLVAGTEISVVLFIRNRF 120
           D  I  LA EA+ C   L  ++           PP+   P T+      IS+ +  +NR+
Sbjct: 61  DPLIAGLAYEAVSCFQCLSLNN-----------PPIGRIPLTTKYLKKNISLQMIYKNRY 120

Query: 121 RAISGVKYFLTNVCSRVFTDILETVL-----GRTDSQSDAALVINGFPHPVFGSITIVP- 180
            AI+G+K FLT VC+R+FTDIL  VL        D++    L I GFPHP+FGSI ++P 
Sbjct: 121 SAITGIKNFLTTVCTRIFTDILLRVLPPSSMSSFDARLRQPLQIPGFPHPIFGSINVMPN 180

Query: 181 ---------KCLNHTFPTGRLWEWRMSDGGIVEDDRTLFLTFSRGFPVSAEEIKGLFTEA 240
                    K  N  F    LW W  ++    E+DRTLFLTFSRG+PV+  EI  LFT+ 
Sbjct: 181 EVDRDNFSNKNNNLFFIPNGLWGWN-ANCIATENDRTLFLTFSRGYPVTHAEIIELFTKE 240

Query: 241 FGE-CVVGIQME-----------LVPVGEQPLYARVVMSSVVAVDRILDGKRIAKFRTNG 283
           +GE CV G+ M+                +Q L+AR+V+ SV  VDR+LD ++  +    G
Sbjct: 241 YGENCVEGVYMQHDNKRSFNANANRSCEQQSLFARLVLDSVTTVDRVLDDEQKKELMIYG 299

BLAST of CmoCh12G002840 vs. TAIR 10
Match: AT5G11220.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-44
Identity = 106/267 (39.70%), Postives = 155/267 (58.05%), Query Frame = 0

Query: 38  ISLWLWLEEQGFTNFIFKIIPFPDHFINSLANEALFCLNSLVFDSRHGGGPHPTLLPPVF 97
           ++ W WLE+    N +  I+   D  I +LANEA+ C   L  DS         +     
Sbjct: 1   MATWFWLEDFFSQNILSTILALSDPVIMALANEAVLCFQCL--DSAEQPNDFNQI----- 60

Query: 98  PATSLVAGTEISVVLFIRNRFRAISGVKYFLTNVCSRVFTDILETVLGRTDSQSDAA--- 157
           P T+ +   +IS+ +F ++R+ AI+G++ FLT VCSR+F+DIL+  L  + S        
Sbjct: 61  PLTAELLAKDISLQIFHKHRYSAIAGIRNFLTTVCSRIFSDILQRALPPSSSYPFVTRLR 120

Query: 158 --LVINGFPHPVFGSITIVPKCL-------NHTFPTGR-LWEWRMSDGGIVEDDRTLFLT 217
             L+I GFPHP FGSI ++   +       N+ FP    LW W  S     +++RT+F+T
Sbjct: 121 HPLIIPGFPHPTFGSINVMHDVVVGDNLYNNNLFPCSHGLWGWNASCIA-TDNERTMFIT 180

Query: 218 FSRGFPVSAEEIKGLFTEAFGE-CVVGIQME------LVPVG-----EQPLYARVVMSSV 277
           FSRGFPVS  E+K  FT+ +GE CV G+ M+      L   G     +Q L+A++V++SV
Sbjct: 181 FSRGFPVSQAEVKRFFTKNYGENCVEGVYMKEDNKNFLNANGNDNGQQQSLFAKLVLNSV 240

Query: 278 VAVDRILDGKRIAKFRTNGKHIWARKY 280
             VDRILDG++I +F++NGKHIWARKY
Sbjct: 241 ATVDRILDGEKIKRFKSNGKHIWARKY 259

BLAST of CmoCh12G002840 vs. TAIR 10
Match: AT1G49290.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13620.1); Has 99 Blast hits to 93 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 142.1 bits (357), Expect = 6.9e-34
Identity = 98/319 (30.72%), Postives = 155/319 (48.59%), Query Frame = 0

Query: 4   ISLEELHLYHAIDRELFSRLMINLSRDPAQSLLIISLWLWLEEQGFT-NFIFKIIPFPDH 63
           ++ +E + +H IDR LFSRL+ NL+RD  QS L +   L+LE+  +  + I  ++  P+ 
Sbjct: 19  VTRDEFNAFHTIDRTLFSRLVFNLNRDVDQSFLAMCFLLFLEQSSYARDIIAYLVSLPNA 78

Query: 64  FINSLANEALFCLNSLV---FDSRHGGGPHPTLLPPVFPATSLVAGTEISVVLFIRNRFR 123
           F++++ANE   C+N L    F S      +      + P    + G + ++ L  + R  
Sbjct: 79  FVDAVANEIGVCINLLYNVEFASTFFAADNDD--NSMIPLLLRITGGKFTLRLINQQRKN 138

Query: 124 AISGVKYFLTNVCSRVFTDILETVLGRTDSQSDAALVINGF------------------- 183
             +GV    T+VC+R F+D+ ET   R + +   AL    F                   
Sbjct: 139 FCAGVTKSWTDVCTRAFSDLCETA-HRINREKQLALEREKFIEDMKKLRLSLQQEKSNRL 198

Query: 184 --------------PHPVFGSITIVPKCLNHTFPTGRLWEWRMSDGGIVEDDRTLFLTFS 243
                         PHP     T   K L          E +  +G +  DDRT+FLTFS
Sbjct: 199 SVQQVKIASPPPPRPHPPVEDET--EKALREK----ETMEVKEKEGVLAADDRTVFLTFS 258

Query: 244 RGFPVSAEEIKGLFTEAFGECVVGIQMELVPVGEQPLYARVVMSSVVA--VDRILDGKRI 284
           +G+P+S  E++  FT  FGE +  ++M+ V   EQPL+A++VM    A  +D I+  +  
Sbjct: 259 KGYPISEAEVRVYFTRRFGEVIEAVEMQEVEANEQPLFAKMVMKLQCASMMDEIVSARFR 318

BLAST of CmoCh12G002840 vs. TAIR 10
Match: AT5G13620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-33
Identity = 95/292 (32.53%), Postives = 149/292 (51.03%), Query Frame = 0

Query: 3   SISLEELHLYHAIDRELFSRLMINLSRDPAQSLLIISLWLWLEEQGF-TNFIFKIIPFPD 62
           +++ +E + +H  DR LF R ++ L RD  QSL ++S  L+LE+ G  +N I      PD
Sbjct: 9   AVTRDEFNAFHKCDRALFRRFVVRLRRDINQSLQVMSFLLYLEKSGLVSNLIVNFNSLPD 68

Query: 63  HFINSLANEALFCLNSLVFDSRHGGGPHPTLLPPVFPATSLVAGTEISVVLFIRNRFRAI 122
            FIN++A+E + CL+ L +++      +      + P  + + G  +++ +  +NR   +
Sbjct: 69  FFINTVADEVVMCLSCLSYENFSMFVAN--FGKKIIPLITRMTGEYLTLAVIHQNRESIL 128

Query: 123 SGVKYFLTNVCSRVFTDILETVLGRTDSQSDAALVINGFPHPVFGSITIVPKCLNHTFPT 182
             +K  LT++C   F DI          Q++   VI    H  F S  +     +  F +
Sbjct: 129 LDMKKHLTSICYPAFEDIC--------VQAEKEKVIEDMKHLGF-SKAVHKAGSSSQFLS 188

Query: 183 GRLWEWRMSDGGIV-------EDDRTLFLTFSRGFPVSAEEIKGLFTEAFGECVVGIQME 242
            +    R S  G+        EDDRT+FLTFSRG+P+S  E+   FT  FGE +  I M 
Sbjct: 189 EQQATTRTSKVGVFSEDEQAREDDRTVFLTFSRGYPLSEAEVHAYFTRRFGEIIEAIIMP 248

Query: 243 LVPVGEQPLYARVVMSSVVAVDRIL-DGKRIAKFRTNGKHIWARKYERRSEL 286
                EQ LYA++V+ S   +  I+ DG    K+  NGKH+WARKY  RS +
Sbjct: 249 GGEGNEQALYAKMVLHSAAMIPEIVSDGIERNKYTINGKHVWARKYIPRSSI 289

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GHL82.1e-163100.00uncharacterized protein LOC111454239 OS=Cucurbita moschata OX=3662 GN=LOC1114542... [more]
A0A6J1KUV72.9e-15795.85uncharacterized protein LOC111496620 OS=Cucurbita maxima OX=3661 GN=LOC111496620... [more]
A0A5A7VHI73.0e-11774.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3BCV63.0e-11774.83uncharacterized protein LOC103488307 OS=Cucumis melo OX=3656 GN=LOC103488307 PE=... [more]
A0A0A0LLY94.7e-11574.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381710 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G64870.13.2e-5540.32unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G45200.15.4e-5540.51unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G11220.11.5e-4439.70unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G49290.16.9e-3430.72unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G13620.12.0e-3332.53unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33527:SF18F13O11.17 PROTEINcoord: 1..283
NoneNo IPR availablePANTHERPTHR33527OS07G0274300 PROTEINcoord: 1..283

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G002840.1CmoCh12G002840.1mRNA