CmoCh12G002480 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G002480
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionMethionyl-tRNA synthetase
LocationCmo_Chr12: 1615238 .. 1615702 (+)
RNA-Seq ExpressionCmoCh12G002480
SyntenyCmoCh12G002480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTTGGTGTTTGTGTGCGATGAGGACCAGAGGATCCTGTCGAGGCAGCCAGCTCCGGGGGCATGTCCCTACTGCGGAGGCACGATCCAGGCCACCGACGTAGAAACCAAATGGAGGTTCTGTTTCCTCCCTCTCTACTGGAAAAGTAAACGCAAGTTCAATTGCAACAGCTGCAACAGAGAGCTTGTTATGCAGTAGAAACACTGTTATCTTACAGATTTGTTCTTTTCCATGATCTTTGAAGTTAAGATGGGGGTGACCCATCTTATCTTCGTTTTGAGATTATGATCAGTGTTTGTGTAATAATCTCCTACTATCTTAAAAATAGATATACTGATATACATACCTTGAGATTGCTAGAGAATTTTGACCTTTCTCCACGTCTCTTTTATGATTACGAACTACTGTGTATGCTGCATGATCTCTATAGAAATAGATTGCAGTTCTGGATTCAAAACGTAG

mRNA sequence

ATGTGTTTGGTGTTTGTGTGCGATGAGGACCAGAGGATCCTGTCGAGGCAGCCAGCTCCGGGGGCATGTCCCTACTGCGGAGGCACGATCCAGGCCACCGACGTAGAAACCAAATGGAGGTTCTGTTTCCTCCCTCTCTACTGGAAAAGTAAACGCAAGTTCAATTGCAACAGCTGCAACAGAGAGCTTGTTATGCATTCTGGATTCAAAACGTAG

Coding sequence (CDS)

ATGTGTTTGGTGTTTGTGTGCGATGAGGACCAGAGGATCCTGTCGAGGCAGCCAGCTCCGGGGGCATGTCCCTACTGCGGAGGCACGATCCAGGCCACCGACGTAGAAACCAAATGGAGGTTCTGTTTCCTCCCTCTCTACTGGAAAAGTAAACGCAAGTTCAATTGCAACAGCTGCAACAGAGAGCTTGTTATGCATTCTGGATTCAAAACGTAG

Protein sequence

MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCNRELVMHSGFKT
Homology
BLAST of CmoCh12G002480 vs. ExPASy TrEMBL
Match: A0A6J1GHX0 (uncharacterized protein LOC111454313 OS=Cucurbita moschata OX=3662 GN=LOC111454313 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN
Sbjct: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60

Query: 61 RELVM 66
          RELVM
Sbjct: 61 RELVM 65

BLAST of CmoCh12G002480 vs. ExPASy TrEMBL
Match: A0A6J1KLN0 (uncharacterized protein LOC111496375 OS=Cucurbita maxima OX=3661 GN=LOC111496375 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCDEDQRILSRQPAPGACPYC GTIQATDVETKWRFCFLPLYWK+KRKFNC SC 
Sbjct: 1  MCLVFVCDEDQRILSRQPAPGACPYCRGTIQATDVETKWRFCFLPLYWKTKRKFNCTSCT 60

Query: 61 RELVM 66
          R+LVM
Sbjct: 61 RDLVM 65

BLAST of CmoCh12G002480 vs. ExPASy TrEMBL
Match: A0A1S3BCK8 (uncharacterized protein LOC103488227 OS=Cucumis melo OX=3656 GN=LOC103488227 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-27
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 0

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCDEDQR+LSRQPAPGACP+CGG IQATDVE++WRFCF+PLYWK+KRKF C  C 
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 61 RELVM 66
          R+LVM
Sbjct: 61 RQLVM 65

BLAST of CmoCh12G002480 vs. ExPASy TrEMBL
Match: A0A6J1KC13 (uncharacterized protein LOC111491925 OS=Cucurbita maxima OX=3661 GN=LOC111491925 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 0

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCDEDQR+LSRQPAPGACP+CGG IQATDVE++WRFCFLPLYWK+KRKF C  C 
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60

Query: 61 RELVM 66
          R+LV+
Sbjct: 61 RQLVI 65

BLAST of CmoCh12G002480 vs. ExPASy TrEMBL
Match: A0A6J1HDM3 (uncharacterized protein LOC111462635 OS=Cucurbita moschata OX=3662 GN=LOC111462635 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 0

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCDEDQR+LSRQPAPGACP+CGG IQATDVE++WRFCFLPLYWK+KRKF C  C 
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60

Query: 61 RELVM 66
          R+LV+
Sbjct: 61 RQLVI 65

BLAST of CmoCh12G002480 vs. TAIR 10
Match: AT5G10695.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-23
Identity = 39/66 (59.09%), Postives = 53/66 (80.30%), Query Frame = 0

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCD+D+R++ R  APGACPYCGG +Q  DV ++WRFCF+PL  KSKR+  C++C 
Sbjct: 1  MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 61 RELVMH 67
          + L++H
Sbjct: 61 KRLIVH 66

BLAST of CmoCh12G002480 vs. TAIR 10
Match: AT5G57123.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 102.4 bits (254), Expect = 1.5e-22
Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = 0

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLV +CDE++  L RQ APG+CPYCGG +Q  DVE KW FCF+PL +K KRK++C+SC+
Sbjct: 1  MCLVCLCDEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCD 60

Query: 61 RELVMH 67
          R LV++
Sbjct: 61 RRLVLY 66

BLAST of CmoCh12G002480 vs. TAIR 10
Match: AT4G29905.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 96.3 bits (238), Expect = 1.1e-20
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCL  V  E++  L RQ APG CPYCGG + A D+ETKW FCFLPL +K KRK++C+SC 
Sbjct: 1  MCLEVVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCE 60

Query: 61 RELVMH 67
          R LV++
Sbjct: 61 RHLVLY 66

BLAST of CmoCh12G002480 vs. TAIR 10
Match: AT1G52855.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-10
Identity = 23/63 (36.51%), Postives = 36/63 (57.14%), Query Frame = 0

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          +C  F+ D+ +++   +PA G C  CG      D++T  RFCF+P+YW+S R   C+ C 
Sbjct: 2  VCFCFLVDQTRKVKRSKPAAGTCSRCGHCASIADMKTSTRFCFIPIYWRSWRAVVCSFCG 61

Query: 61 REL 64
            L
Sbjct: 62 SVL 64

BLAST of CmoCh12G002480 vs. TAIR 10
Match: AT5G10695.2 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages. )

HSP 1 Score: 52.0 bits (123), Expect = 2.3e-07
Identity = 24/66 (36.36%), Postives = 35/66 (53.03%), Query Frame = 0

Query: 1  MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCN 60
          MCLVFVCD+D+R++                         RFCF+PL  KSKR+  C++C 
Sbjct: 1  MCLVFVCDQDERVIG------------------------RFCFVPLSNKSKRRHLCSTCG 42

Query: 61 RELVMH 67
          + L++H
Sbjct: 61 KRLIVH 42

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GHX01.1e-33100.00uncharacterized protein LOC111454313 OS=Cucurbita moschata OX=3662 GN=LOC1114543... [more]
A0A6J1KLN01.1e-3092.31uncharacterized protein LOC111496375 OS=Cucurbita maxima OX=3661 GN=LOC111496375... [more]
A0A1S3BCK81.6e-2781.54uncharacterized protein LOC103488227 OS=Cucumis melo OX=3656 GN=LOC103488227 PE=... [more]
A0A6J1KC132.0e-2781.54uncharacterized protein LOC111491925 OS=Cucurbita maxima OX=3661 GN=LOC111491925... [more]
A0A6J1HDM32.0e-2781.54uncharacterized protein LOC111462635 OS=Cucurbita moschata OX=3662 GN=LOC1114626... [more]
Match NameE-valueIdentityDescription
AT5G10695.11.8e-2359.09unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G57123.11.5e-2260.61unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G29905.11.1e-2059.09unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G52855.11.0e-1036.51unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G10695.22.3e-0736.36unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_c... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33320:SF20METHIONYL-TRNA SYNTHETASEcoord: 1..66
NoneNo IPR availablePANTHERPTHR33320METHIONYL-TRNA SYNTHETASEcoord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G002480.1CmoCh12G002480.1mRNA