CmoCh12G002380 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCAATGTCAATGTGTGTGCTGGTATTCGATTGCAAAGGTGAAGCCATCAGGTTTGAACAACAATCACAGGGTGGGTTTATTTTGAATGGGTTGTCCTTTGTATTAATGATTAGACAGAGTGGCTCTATATTGTTTGTGTTTGTGTTTTTTTTCTTAAATGACGGATGGGTTTTGAAAGTCAATTTTGCACTTATAACACATTGTGGTATTCTAGGTCTAATTTTCTAAATTTATTTATAAAATATTTAATGTTCTTGTTCATAATTTTAGCCCACTCCTAGCAACTTTTCCTTTTAAGCTGTTGTTAAGAAGAGGTATTTAGTTATAATGTTTGGTTTCCCTAATGTATTCTACCCTTTTAAGTTTTTTAATTTGATTAATTACTATTTTAATCTTACAAAATTTTAATACTAAGCTGGTTAAGATTGTATTTTGGCCGAAATTTTAATACTAAGCTCTTACGAAATTTTAATACTAAGATCATTAGCTTTAGACCAACGGGTTGATCTATGCTATTTTGGCAGAAACCTTATTCATAGTCAATCCTTAAAAGAGTCCTAGCTTATTTGACGTCAATCAAAGCTTCCATTAGTTCCTTGTGACTCTTAACAAACCTTGAAGCAAAATCAACCCAAGAGAGGAAATTTAAGTGTTGGCTAATGACCAACCCTTTCACACTCATAGGGTTTTGAATTGAGTTATGGCGTTTCATTATTATCACGACTCAACGACCTGATATGTACAATTTTTGTACAGTGTCAAAATACTTATGTGTACAAATGTACGAGTATAAAATTCGAATTTTAACTACGTTCTAAGACGGGCTGAAAAATGCATCTTTAGTTTCTGCTTTCTAAGCTATCTACAAATTCGATTCTTAATCCTAATCCTAATCCTAATAAAGCAATAAAGTATCCGTAGCTTAACAATATGCATATGTCACTAAATAACTTAGCACTATATACCTTGTGATATTTTTTTTGGGTTAGAATAGTCTTTATAATTGATAATTTGTCCCAAGAAAAATATATAGATTCGTTAAGAGAACCGAATCCTCAACCTATAACGATCTCCTCCATAAATAAATGAACTAATCTGTGAAACGAGATATTCCCAAACAGACTAACAAATCAATTTACTAAATATAGTGAGGATGAACACATACCACTGTGTTCTTGTTGTTACTTTGAGAGAAATTCACGCCCAACCAAGCAATTGCTTTGCCAATCTGTGATCTGCTTGATCTTTTGCTCCTATAAATTCATCCCTTTGGTTCTGCAACAGAGACAAGCAGCAACAAAAAAGTTAATTCATTGTTCATTTGACAAAAAACGAACAAAAAAAAGAAAAAAAGAATAAGTAGTGAAGCAACAATCATGAATAAGTCCTCGGTTTCGATCTCTGTTACTTTTGTTTTGTTCTTCCTCTTCGCCTGCTCTGTTCCTGTTTCAGGCTTCAACATCACAAGGCTCCTCAATCGGTTCCCTGAATTTGGCGTTTTCAATGGATATCTGACGAAAACTCGTCTCTTCGAACAGATCAACATTCGCCAAACTATCACCATTCTCGCCCTCGACAATGGCGTCGTTCCGAGCATCACTGGAAACTCTCTTGACGTAATCAAGCAGATTTTGAGTGCTCATGTTATTCTCGATTACTACGATTCTGCTAAGTTCAGGAAGCTCTCCACCAACAAGCCTACAGTACTTACTACCATGTTCCAGGCCACTGGCGACGCCGTACGCGAGCAAGGGTTTGTGAAAGTTGTGCTGAACAGGAGAGGTCAAATCGAATTCGGATCTGCTTGGAAAGGCGCGCCTTTCACCTCAATGTTTGTCAGAGCTGTTGCCTCACAGCCCTACAATATCTCTGTTATTCAAATCAGTTCTCCGATTGTGGTCCCTGGCATTGGACGTTACAATTTGCCTCCTCCAGCGCCTGTTGCACCGGAACCAGATGTTGCTCCTGTTCCCGCTCCGACTCCATTGGCTGATACTCCTTCACCGGCGGACGAGTCTCCAGCCGATGCTCCCTCACCAGACGCCGACTCTCCAGTTCCGACGGCGGATGCGCCTGATGCACCGTCGAGTGCTCCTCATCCATCTGCTGATGACGAAGAGGATGCAGATGCACCGAGTCCAGACGACGAGGAAGACCATTCGGCAGCTTCACGTGGCCACATCGCCGGCGCCGGAGTGATGGTGGCCGGATTGATGTCACTCTACATGGCTTTTTAA ATGCCAATGTCAATGTGTGTGCTGGTATTCGATTGCAAAGGTGAAGCCATCAGGTTTGAACAACAATCACAGGGTGGGTTTATTTTGAATGGGTTGTCCTTTGTATTAATGATTAGACAGAGTGGCTCTATATTGTTTGTGTTTGTGTTTTTTTTCTTAAATGACGGATGGGTTTTGAAAGTCAATTTTGCACTTATAACACATTGTGGTATTCTAGGCTTCAACATCACAAGGCTCCTCAATCGGTTCCCTGAATTTGGCGTTTTCAATGGATATCTGACGAAAACTCGTCTCTTCGAACAGATCAACATTCGCCAAACTATCACCATTCTCGCCCTCGACAATGGCGTCGTTCCGAGCATCACTGGAAACTCTCTTGACGTAATCAAGCAGATTTTGAGTGCTCATGTTATTCTCGATTACTACGATTCTGCTAAGTTCAGGAAGCTCTCCACCAACAAGCCTACAGTACTTACTACCATGTTCCAGGCCACTGGCGACGCCGTACGCGAGCAAGGGTTTGTGAAAGTTGTGCTGAACAGGAGAGGTCAAATCGAATTCGGATCTGCTTGGAAAGGCGCGCCTTTCACCTCAATGTTTGTCAGAGCTGTTGCCTCACAGCCCTACAATATCTCTGTTATTCAAATCAGTTCTCCGATTGTGGTCCCTGGCATTGGACGTTACAATTTGCCTCCTCCAGCGCCTGTTGCACCGGAACCAGATGTTGCTCCTGTTCCCGCTCCGACTCCATTGGCTGATACTCCTTCACCGGCGGACGAGTCTCCAGCCGATGCTCCCTCACCAGACGCCGACTCTCCAGTTCCGACGGCGGATGCGCCTGATGCACCGTCGAGTGCTCCTCATCCATCTGCTGATGACGAAGAGGATGCAGATGCACCGAGTCCAGACGACGAGGAAGACCATTCGGCAGCTTCACGTGGCCACATCGCCGGCGCCGGAGTGATGGTGGCCGGATTGATGTCACTCTACATGGCTTTTTAA ATGCCAATGTCAATGTGTGTGCTGGTATTCGATTGCAAAGGTGAAGCCATCAGGTTTGAACAACAATCACAGGGTGGGTTTATTTTGAATGGGTTGTCCTTTGTATTAATGATTAGACAGAGTGGCTCTATATTGTTTGTGTTTGTGTTTTTTTTCTTAAATGACGGATGGGTTTTGAAAGTCAATTTTGCACTTATAACACATTGTGGTATTCTAGGCTTCAACATCACAAGGCTCCTCAATCGGTTCCCTGAATTTGGCGTTTTCAATGGATATCTGACGAAAACTCGTCTCTTCGAACAGATCAACATTCGCCAAACTATCACCATTCTCGCCCTCGACAATGGCGTCGTTCCGAGCATCACTGGAAACTCTCTTGACGTAATCAAGCAGATTTTGAGTGCTCATGTTATTCTCGATTACTACGATTCTGCTAAGTTCAGGAAGCTCTCCACCAACAAGCCTACAGTACTTACTACCATGTTCCAGGCCACTGGCGACGCCGTACGCGAGCAAGGGTTTGTGAAAGTTGTGCTGAACAGGAGAGGTCAAATCGAATTCGGATCTGCTTGGAAAGGCGCGCCTTTCACCTCAATGTTTGTCAGAGCTGTTGCCTCACAGCCCTACAATATCTCTGTTATTCAAATCAGTTCTCCGATTGTGGTCCCTGGCATTGGACGTTACAATTTGCCTCCTCCAGCGCCTGTTGCACCGGAACCAGATGTTGCTCCTGTTCCCGCTCCGACTCCATTGGCTGATACTCCTTCACCGGCGGACGAGTCTCCAGCCGATGCTCCCTCACCAGACGCCGACTCTCCAGTTCCGACGGCGGATGCGCCTGATGCACCGTCGAGTGCTCCTCATCCATCTGCTGATGACGAAGAGGATGCAGATGCACCGAGTCCAGACGACGAGGAAGACCATTCGGCAGCTTCACGTGGCCACATCGCCGGCGCCGGAGTGATGGTGGCCGGATTGATGTCACTCTACATGGCTTTTTAA MPMSMCVLVFDCKGEAIRFEQQSQGGFILNGLSFVLMIRQSGSILFVFVFFFLNDGWVLKVNFALITHCGILGFNITRLLNRFPEFGVFNGYLTKTRLFEQINIRQTITILALDNGVVPSITGNSLDVIKQILSAHVILDYYDSAKFRKLSTNKPTVLTTMFQATGDAVREQGFVKVVLNRRGQIEFGSAWKGAPFTSMFVRAVASQPYNISVIQISSPIVVPGIGRYNLPPPAPVAPEPDVAPVPAPTPLADTPSPADESPADAPSPDADSPVPTADAPDAPSSAPHPSADDEEDADAPSPDDEEDHSAASRGHIAGAGVMVAGLMSLYMAF Homology
BLAST of CmoCh12G002380 vs. ExPASy Swiss-Prot
Match: Q9ZQ23 (Fasciclin-like arabinogalactan protein 3 OS=Arabidopsis thaliana OX=3702 GN=FLA3 PE=2 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 2.3e-33 Identity = 107/261 (41.00%), Postives = 150/261 (57.47%), Query Frame = 0
BLAST of CmoCh12G002380 vs. ExPASy Swiss-Prot
Match: Q9LZX4 (Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA10 PE=2 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 6.8e-30 Identity = 74/166 (44.58%), Postives = 108/166 (65.06%), Query Frame = 0
BLAST of CmoCh12G002380 vs. ExPASy Swiss-Prot
Match: O22126 (Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana OX=3702 GN=FLA8 PE=2 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 2.2e-28 Identity = 73/182 (40.11%), Postives = 112/182 (61.54%), Query Frame = 0
BLAST of CmoCh12G002380 vs. ExPASy Swiss-Prot
Match: O49586 (Fasciclin-like arabinogalactan protein 5 OS=Arabidopsis thaliana OX=3702 GN=FLA5 PE=2 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 2.8e-28 Identity = 102/284 (35.92%), Postives = 146/284 (51.41%), Query Frame = 0
BLAST of CmoCh12G002380 vs. ExPASy Swiss-Prot
Match: Q9LTW9 (Fasciclin-like arabinogalactan protein 14 OS=Arabidopsis thaliana OX=3702 GN=FLA14 PE=2 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 1.1e-27 Identity = 94/242 (38.84%), Postives = 133/242 (54.96%), Query Frame = 0
BLAST of CmoCh12G002380 vs. ExPASy TrEMBL
Match: A0A6J1GIP6 (fasciclin-like arabinogalactan protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111454605 PE=4 SV=1) HSP 1 Score: 488.8 bits (1257), Expect = 1.8e-134 Identity = 270/297 (90.91%), Postives = 272/297 (91.58%), Query Frame = 0
BLAST of CmoCh12G002380 vs. ExPASy TrEMBL
Match: A0A6J1KTM3 (fasciclin-like arabinogalactan protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111496292 PE=4 SV=1) HSP 1 Score: 477.6 bits (1228), Expect = 4.1e-131 Identity = 266/297 (89.56%), Postives = 270/297 (90.91%), Query Frame = 0
BLAST of CmoCh12G002380 vs. ExPASy TrEMBL
Match: A0A6J1BR76 (fasciclin-like arabinogalactan protein 3 OS=Momordica charantia OX=3673 GN=LOC111004969 PE=4 SV=1) HSP 1 Score: 325.9 bits (834), Expect = 2.0e-85 Identity = 195/268 (72.76%), Postives = 215/268 (80.22%), Query Frame = 0
BLAST of CmoCh12G002380 vs. ExPASy TrEMBL
Match: A0A5A7VHN0 (Fasciclin-like arabinogalactan protein 14 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003120 PE=3 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80 Identity = 186/297 (62.63%), Postives = 220/297 (74.07%), Query Frame = 0
BLAST of CmoCh12G002380 vs. ExPASy TrEMBL
Match: A0A1S3BCK5 (fasciclin-like arabinogalactan protein 14 OS=Cucumis melo OX=3656 GN=LOC103488561 PE=3 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80 Identity = 186/297 (62.63%), Postives = 220/297 (74.07%), Query Frame = 0
BLAST of CmoCh12G002380 vs. TAIR 10
Match: AT2G24450.1 (FASCICLIN-like arabinogalactan protein 3 precursor ) HSP 1 Score: 144.4 bits (363), Expect = 1.6e-34 Identity = 107/261 (41.00%), Postives = 150/261 (57.47%), Query Frame = 0
BLAST of CmoCh12G002380 vs. TAIR 10
Match: AT3G60900.1 (FASCICLIN-like arabinogalactan-protein 10 ) HSP 1 Score: 132.9 bits (333), Expect = 4.8e-31 Identity = 74/166 (44.58%), Postives = 108/166 (65.06%), Query Frame = 0
BLAST of CmoCh12G002380 vs. TAIR 10
Match: AT2G45470.1 (FASCICLIN-like arabinogalactan protein 8 ) HSP 1 Score: 127.9 bits (320), Expect = 1.5e-29 Identity = 73/182 (40.11%), Postives = 112/182 (61.54%), Query Frame = 0
BLAST of CmoCh12G002380 vs. TAIR 10
Match: AT4G31370.1 (FASCICLIN-like arabinogalactan protein 5 precursor ) HSP 1 Score: 127.5 bits (319), Expect = 2.0e-29 Identity = 102/284 (35.92%), Postives = 146/284 (51.41%), Query Frame = 0
BLAST of CmoCh12G002380 vs. TAIR 10
Match: AT3G12660.1 (FASCICLIN-like arabinogalactan protein 14 precursor ) HSP 1 Score: 125.6 bits (314), Expect = 7.7e-29 Identity = 94/242 (38.84%), Postives = 133/242 (54.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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