CmoCh12G002380 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G002380
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionfasciclin-like arabinogalactan protein 14
LocationCmo_Chr12: 1564264 .. 1566503 (+)
RNA-Seq ExpressionCmoCh12G002380
SyntenyCmoCh12G002380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAATGTCAATGTGTGTGCTGGTATTCGATTGCAAAGGTGAAGCCATCAGGTTTGAACAACAATCACAGGGTGGGTTTATTTTGAATGGGTTGTCCTTTGTATTAATGATTAGACAGAGTGGCTCTATATTGTTTGTGTTTGTGTTTTTTTTCTTAAATGACGGATGGGTTTTGAAAGTCAATTTTGCACTTATAACACATTGTGGTATTCTAGGTCTAATTTTCTAAATTTATTTATAAAATATTTAATGTTCTTGTTCATAATTTTAGCCCACTCCTAGCAACTTTTCCTTTTAAGCTGTTGTTAAGAAGAGGTATTTAGTTATAATGTTTGGTTTCCCTAATGTATTCTACCCTTTTAAGTTTTTTAATTTGATTAATTACTATTTTAATCTTACAAAATTTTAATACTAAGCTGGTTAAGATTGTATTTTGGCCGAAATTTTAATACTAAGCTCTTACGAAATTTTAATACTAAGATCATTAGCTTTAGACCAACGGGTTGATCTATGCTATTTTGGCAGAAACCTTATTCATAGTCAATCCTTAAAAGAGTCCTAGCTTATTTGACGTCAATCAAAGCTTCCATTAGTTCCTTGTGACTCTTAACAAACCTTGAAGCAAAATCAACCCAAGAGAGGAAATTTAAGTGTTGGCTAATGACCAACCCTTTCACACTCATAGGGTTTTGAATTGAGTTATGGCGTTTCATTATTATCACGACTCAACGACCTGATATGTACAATTTTTGTACAGTGTCAAAATACTTATGTGTACAAATGTACGAGTATAAAATTCGAATTTTAACTACGTTCTAAGACGGGCTGAAAAATGCATCTTTAGTTTCTGCTTTCTAAGCTATCTACAAATTCGATTCTTAATCCTAATCCTAATCCTAATAAAGCAATAAAGTATCCGTAGCTTAACAATATGCATATGTCACTAAATAACTTAGCACTATATACCTTGTGATATTTTTTTTGGGTTAGAATAGTCTTTATAATTGATAATTTGTCCCAAGAAAAATATATAGATTCGTTAAGAGAACCGAATCCTCAACCTATAACGATCTCCTCCATAAATAAATGAACTAATCTGTGAAACGAGATATTCCCAAACAGACTAACAAATCAATTTACTAAATATAGTGAGGATGAACACATACCACTGTGTTCTTGTTGTTACTTTGAGAGAAATTCACGCCCAACCAAGCAATTGCTTTGCCAATCTGTGATCTGCTTGATCTTTTGCTCCTATAAATTCATCCCTTTGGTTCTGCAACAGAGACAAGCAGCAACAAAAAAGTTAATTCATTGTTCATTTGACAAAAAACGAACAAAAAAAAGAAAAAAAGAATAAGTAGTGAAGCAACAATCATGAATAAGTCCTCGGTTTCGATCTCTGTTACTTTTGTTTTGTTCTTCCTCTTCGCCTGCTCTGTTCCTGTTTCAGGCTTCAACATCACAAGGCTCCTCAATCGGTTCCCTGAATTTGGCGTTTTCAATGGATATCTGACGAAAACTCGTCTCTTCGAACAGATCAACATTCGCCAAACTATCACCATTCTCGCCCTCGACAATGGCGTCGTTCCGAGCATCACTGGAAACTCTCTTGACGTAATCAAGCAGATTTTGAGTGCTCATGTTATTCTCGATTACTACGATTCTGCTAAGTTCAGGAAGCTCTCCACCAACAAGCCTACAGTACTTACTACCATGTTCCAGGCCACTGGCGACGCCGTACGCGAGCAAGGGTTTGTGAAAGTTGTGCTGAACAGGAGAGGTCAAATCGAATTCGGATCTGCTTGGAAAGGCGCGCCTTTCACCTCAATGTTTGTCAGAGCTGTTGCCTCACAGCCCTACAATATCTCTGTTATTCAAATCAGTTCTCCGATTGTGGTCCCTGGCATTGGACGTTACAATTTGCCTCCTCCAGCGCCTGTTGCACCGGAACCAGATGTTGCTCCTGTTCCCGCTCCGACTCCATTGGCTGATACTCCTTCACCGGCGGACGAGTCTCCAGCCGATGCTCCCTCACCAGACGCCGACTCTCCAGTTCCGACGGCGGATGCGCCTGATGCACCGTCGAGTGCTCCTCATCCATCTGCTGATGACGAAGAGGATGCAGATGCACCGAGTCCAGACGACGAGGAAGACCATTCGGCAGCTTCACGTGGCCACATCGCCGGCGCCGGAGTGATGGTGGCCGGATTGATGTCACTCTACATGGCTTTTTAA

mRNA sequence

ATGCCAATGTCAATGTGTGTGCTGGTATTCGATTGCAAAGGTGAAGCCATCAGGTTTGAACAACAATCACAGGGTGGGTTTATTTTGAATGGGTTGTCCTTTGTATTAATGATTAGACAGAGTGGCTCTATATTGTTTGTGTTTGTGTTTTTTTTCTTAAATGACGGATGGGTTTTGAAAGTCAATTTTGCACTTATAACACATTGTGGTATTCTAGGCTTCAACATCACAAGGCTCCTCAATCGGTTCCCTGAATTTGGCGTTTTCAATGGATATCTGACGAAAACTCGTCTCTTCGAACAGATCAACATTCGCCAAACTATCACCATTCTCGCCCTCGACAATGGCGTCGTTCCGAGCATCACTGGAAACTCTCTTGACGTAATCAAGCAGATTTTGAGTGCTCATGTTATTCTCGATTACTACGATTCTGCTAAGTTCAGGAAGCTCTCCACCAACAAGCCTACAGTACTTACTACCATGTTCCAGGCCACTGGCGACGCCGTACGCGAGCAAGGGTTTGTGAAAGTTGTGCTGAACAGGAGAGGTCAAATCGAATTCGGATCTGCTTGGAAAGGCGCGCCTTTCACCTCAATGTTTGTCAGAGCTGTTGCCTCACAGCCCTACAATATCTCTGTTATTCAAATCAGTTCTCCGATTGTGGTCCCTGGCATTGGACGTTACAATTTGCCTCCTCCAGCGCCTGTTGCACCGGAACCAGATGTTGCTCCTGTTCCCGCTCCGACTCCATTGGCTGATACTCCTTCACCGGCGGACGAGTCTCCAGCCGATGCTCCCTCACCAGACGCCGACTCTCCAGTTCCGACGGCGGATGCGCCTGATGCACCGTCGAGTGCTCCTCATCCATCTGCTGATGACGAAGAGGATGCAGATGCACCGAGTCCAGACGACGAGGAAGACCATTCGGCAGCTTCACGTGGCCACATCGCCGGCGCCGGAGTGATGGTGGCCGGATTGATGTCACTCTACATGGCTTTTTAA

Coding sequence (CDS)

ATGCCAATGTCAATGTGTGTGCTGGTATTCGATTGCAAAGGTGAAGCCATCAGGTTTGAACAACAATCACAGGGTGGGTTTATTTTGAATGGGTTGTCCTTTGTATTAATGATTAGACAGAGTGGCTCTATATTGTTTGTGTTTGTGTTTTTTTTCTTAAATGACGGATGGGTTTTGAAAGTCAATTTTGCACTTATAACACATTGTGGTATTCTAGGCTTCAACATCACAAGGCTCCTCAATCGGTTCCCTGAATTTGGCGTTTTCAATGGATATCTGACGAAAACTCGTCTCTTCGAACAGATCAACATTCGCCAAACTATCACCATTCTCGCCCTCGACAATGGCGTCGTTCCGAGCATCACTGGAAACTCTCTTGACGTAATCAAGCAGATTTTGAGTGCTCATGTTATTCTCGATTACTACGATTCTGCTAAGTTCAGGAAGCTCTCCACCAACAAGCCTACAGTACTTACTACCATGTTCCAGGCCACTGGCGACGCCGTACGCGAGCAAGGGTTTGTGAAAGTTGTGCTGAACAGGAGAGGTCAAATCGAATTCGGATCTGCTTGGAAAGGCGCGCCTTTCACCTCAATGTTTGTCAGAGCTGTTGCCTCACAGCCCTACAATATCTCTGTTATTCAAATCAGTTCTCCGATTGTGGTCCCTGGCATTGGACGTTACAATTTGCCTCCTCCAGCGCCTGTTGCACCGGAACCAGATGTTGCTCCTGTTCCCGCTCCGACTCCATTGGCTGATACTCCTTCACCGGCGGACGAGTCTCCAGCCGATGCTCCCTCACCAGACGCCGACTCTCCAGTTCCGACGGCGGATGCGCCTGATGCACCGTCGAGTGCTCCTCATCCATCTGCTGATGACGAAGAGGATGCAGATGCACCGAGTCCAGACGACGAGGAAGACCATTCGGCAGCTTCACGTGGCCACATCGCCGGCGCCGGAGTGATGGTGGCCGGATTGATGTCACTCTACATGGCTTTTTAA

Protein sequence

MPMSMCVLVFDCKGEAIRFEQQSQGGFILNGLSFVLMIRQSGSILFVFVFFFLNDGWVLKVNFALITHCGILGFNITRLLNRFPEFGVFNGYLTKTRLFEQINIRQTITILALDNGVVPSITGNSLDVIKQILSAHVILDYYDSAKFRKLSTNKPTVLTTMFQATGDAVREQGFVKVVLNRRGQIEFGSAWKGAPFTSMFVRAVASQPYNISVIQISSPIVVPGIGRYNLPPPAPVAPEPDVAPVPAPTPLADTPSPADESPADAPSPDADSPVPTADAPDAPSSAPHPSADDEEDADAPSPDDEEDHSAASRGHIAGAGVMVAGLMSLYMAF
Homology
BLAST of CmoCh12G002380 vs. ExPASy Swiss-Prot
Match: Q9ZQ23 (Fasciclin-like arabinogalactan protein 3 OS=Arabidopsis thaliana OX=3702 GN=FLA3 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.3e-33
Identity = 107/261 (41.00%), Postives = 150/261 (57.47%), Query Frame = 0

Query: 75  NITRLLNRFPEFGVFNGYLTKTRLFEQINIRQTITILALDNGVVPSITGNSLDVIKQILS 134
           NITR+L ++PEF      L KT L   IN RQTIT+LAL+N  + SI+G   + +K IL 
Sbjct: 26  NITRVLEKYPEFSTMTELLAKTELTPIINKRQTITVLALNNDAIGSISGRPEEEVKNILM 85

Query: 135 AHVILDYYDSAKFRKLSTNKPTVLTTMFQATGDAVREQGFVKVVLNRRGQIEFGSAWKGA 194
            HV+LDY+D  K + L   K T+LTT++Q+TG   ++ GF+       G+I FGS  KGA
Sbjct: 86  NHVVLDYFDELKLKALK-EKSTLLTTLYQSTGLGQQQNGFLNCT-KSNGKIYFGSGVKGA 145

Query: 195 PFTSMFVRAVASQPYNISVIQISSPIVVPGIGR-YNLPPPAPVAPEPDVAPVPAPTPLAD 254
           P T+ ++  V   PYN+SV+QIS PIV PG+G    +PPP P++  P  AP P       
Sbjct: 146 PQTAEYITTVFRNPYNLSVVQISMPIVAPGLGSPVKVPPPPPMSSPP--APSPKKGAATP 205

Query: 255 TPSPADESP-ADAPSPDADSPVPTADAPDAPSSAPHPSADDEEDADAPSPDDEEDHSAAS 314
            P+PADE   ADAP   A    P A AP + S +P P+ D        + D+ E  S+AS
Sbjct: 206 APAPADEGDYADAPPGLAPETAP-ASAP-SESDSPAPAPDKSGKKKMAAADEAEPPSSAS 265

Query: 315 RGHIAGAGVMVAGLMSLYMAF 334
              ++   V+V G ++ ++ F
Sbjct: 266 NTGLSFGAVLVLGFVASFVGF 280

BLAST of CmoCh12G002380 vs. ExPASy Swiss-Prot
Match: Q9LZX4 (Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA10 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.8e-30
Identity = 74/166 (44.58%), Postives = 108/166 (65.06%), Query Frame = 0

Query: 71  ILGFNITRLLNRFPEFGVFNGYLTKTRLFEQINIRQTITILALDNGVVPSITG-NSLDVI 130
           + G NIT++L+  PE+  FN YL++T+L ++IN R TIT+L L+NG + S+ G + L V+
Sbjct: 23  VSGHNITQILSDTPEYSSFNNYLSQTKLADEINSRTTITVLVLNNGAMSSLAGKHPLSVV 82

Query: 131 KQILSAHVILDYYDSAKFRKLSTNKPTVLTTMFQATGDAVREQGFVKVVLNRRGQIEFGS 190
           K  LS  V+LDYYD  K  +LS    T+ TT++Q TG A+   GFV V   + G++ FGS
Sbjct: 83  KNALSLLVLLDYYDPLKLHQLSKG-TTLTTTLYQTTGHALGNLGFVNVTDLKGGKVGFGS 142

Query: 191 AWKGAPFTSMFVRAVASQPYNISVIQISSPIVVPGIGRYNLPPPAP 236
           A  G+   S + ++V   PYNISV++I++PI+ PGI    L  PAP
Sbjct: 143 AAPGSKLDSSYTKSVKQIPYNISVLEINAPIIAPGI----LTAPAP 183

BLAST of CmoCh12G002380 vs. ExPASy Swiss-Prot
Match: O22126 (Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana OX=3702 GN=FLA8 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.2e-28
Identity = 73/182 (40.11%), Postives = 112/182 (61.54%), Query Frame = 0

Query: 58  VLKVNFALITHCG-ILGFNITRLLNRFPEFGVFNGYLTKTRLFEQINIRQTITILALDNG 117
           +L   F+L+     +   NIT++L   P++  FN YL++T+L ++IN R TIT+L L+NG
Sbjct: 9   LLAFTFSLLAFASTVSSHNITQILADSPDYSSFNSYLSQTKLADEINSRTTITVLVLNNG 68

Query: 118 VVPSITG-NSLDVIKQILSAHVILDYYDSAKFRKLSTNKPTVLTTMFQATGDAVREQGFV 177
            + ++ G + L VIK  LS  V+LDYYD  K  K+S    T+ TT++Q TG+A    GFV
Sbjct: 69  AMSALAGKHPLSVIKSALSLLVLLDYYDPQKLHKISKG-TTLSTTLYQTTGNAPGNLGFV 128

Query: 178 KVVLNRRGQIEFGSAWKGAPFTSMFVRAVASQPYNISVIQISSPIVVPGIGRYNLPPPAP 237
            +   + G++ FGSA  G+   S + ++V   PYNIS+++I +PI+ PG+    L  PAP
Sbjct: 129 NITDLKGGKVGFGSAASGSKLDSSYTKSVKQIPYNISILEIDAPIIAPGV----LTAPAP 185

BLAST of CmoCh12G002380 vs. ExPASy Swiss-Prot
Match: O49586 (Fasciclin-like arabinogalactan protein 5 OS=Arabidopsis thaliana OX=3702 GN=FLA5 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.8e-28
Identity = 102/284 (35.92%), Postives = 146/284 (51.41%), Query Frame = 0

Query: 58  VLKVNFALITHCGILGFNITRLLNRFPEFGVFNGYLTKTRLFEQINIRQTITILALDNGV 117
           +L +   L+    +   NIT    ++ +F        KT+L   I+  QTIT+LA+ N  
Sbjct: 9   LLSLTILLVFSKVVTANNITLAFQKYSKFSTMRDLFIKTKLIAAIDKYQTITVLAVSNDA 68

Query: 118 VPSITGNSLDVIKQILSAHVILDYYDSAKFRKLSTNKPTVLTTMFQATGDAVREQGFVKV 177
           + SIT  S   ++ IL  HVILDYYD  K + +   K  +LTT++Q TG   +  GF+  
Sbjct: 69  ISSITNRSEVELRNILMTHVILDYYDELKLQGM-REKSIMLTTLYQTTGLGEQMNGFLN- 128

Query: 178 VLNRRGQIEFGSAWKGAPFTSMFVRAVASQPYNISVIQISSPIVVPGIGRYNLPPPAP-- 237
           V   +G++ FGS  K +P  + +V  V   PYN+S+IQI+ PIV PG+     PPP P  
Sbjct: 129 VSKSKGRVYFGSEVKNSPLNAEYVSTVYHNPYNLSIIQITMPIVAPGLSLAIFPPPPPYV 188

Query: 238 -VAPEP---DVAPVPAPTPLADTPSPADESPADAPSPDADSPVPTADAPDAPSSAPHPSA 297
            VAP P   D + VPAP P AD  SP    P   P+       P  D P+A S AP PSA
Sbjct: 189 HVAPYPTPMDASVVPAPGPAADDNSPDSAVPKTPPA-------PATDTPEADSPAPAPSA 248

Query: 298 DDE--EDADAPSPDDEEDHSAASRGHIAGAGVMVAGLMSLYMAF 334
           D+E  E AD   P      S+AS+   +   +++   ++ +  F
Sbjct: 249 DNEKIEAADKAKPS-----SSASKAGWSFDVILLLAFLASFAGF 278

BLAST of CmoCh12G002380 vs. ExPASy Swiss-Prot
Match: Q9LTW9 (Fasciclin-like arabinogalactan protein 14 OS=Arabidopsis thaliana OX=3702 GN=FLA14 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-27
Identity = 94/242 (38.84%), Postives = 133/242 (54.96%), Query Frame = 0

Query: 43  SILFVFVFFFLNDGWVLKVNFALITHCGILGFNITRLLNRFPEFGVFNGYLTKTRLFEQI 102
           S L +F FFF +       N           FNIT +LN   +F  FN  L++T+L   I
Sbjct: 3   SSLTIFFFFFASTFLYTSSN----------SFNITNILNEHDDFSNFNQLLSETQLASTI 62

Query: 103 NIRQTITILALDNGVVPSITGNSLDVIKQILSAHVILDYYDSAKFRKLSTNKPTVLTTMF 162
           N RQTIT+L + NG + S++G    VIK+ILS H++LDYYD  K + LS  K  +LTT+F
Sbjct: 63  NKRQTITVLVVSNGALSSLSGQPTSVIKKILSLHIVLDYYDQKKLKNLS-KKTVLLTTLF 122

Query: 163 QATGDAVREQGFVKVVLNRRGQIEFGSAWKGAPFTSMFVRAVASQPYNISVIQISSPIVV 222
           Q++G A  +QGF+   + + G + FGSA  G+   +     VA+ P+NISV+ ISS I++
Sbjct: 123 QSSGLARGQQGFLNATVMKNGDVAFGSAVPGSSLDAQLQDTVAALPFNISVLHISSAIMI 182

Query: 223 PGIGRYNLPPPAPVAPEPDVAPVPAPTPLADTPSPADESPADAPSPDADSPVPTADAPDA 282
              G  N P  +P++P     P PA +P  D     DE P+ AP   AD P   A + + 
Sbjct: 183 DVKGD-NAPTASPLSPVSS-PPRPAESP-NDDGQDFDEPPSSAPGAAADEPSENAGSANG 230

Query: 283 PS 285
            S
Sbjct: 243 VS 230

BLAST of CmoCh12G002380 vs. ExPASy TrEMBL
Match: A0A6J1GIP6 (fasciclin-like arabinogalactan protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111454605 PE=4 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 1.8e-134
Identity = 270/297 (90.91%), Postives = 272/297 (91.58%), Query Frame = 0

Query: 37  MIRQSGSILFVFVFFFLNDGWVLKVNFALITHCGILGFNITRLLNRFPEFGVFNGYLTKT 96
           M + S SI   FV FFL                 + GFNITRLLNRFPEFGVFNGYLTKT
Sbjct: 1   MNKSSVSISVTFVLFFL-----------FACSVPVSGFNITRLLNRFPEFGVFNGYLTKT 60

Query: 97  RLFEQINIRQTITILALDNGVVPSITGNSLDVIKQILSAHVILDYYDSAKFRKLSTNKPT 156
           RLFEQINIRQTITILALDNGVVPSITGNSLDVIKQILSAHVILDYYDSAKFRKLSTNKPT
Sbjct: 61  RLFEQINIRQTITILALDNGVVPSITGNSLDVIKQILSAHVILDYYDSAKFRKLSTNKPT 120

Query: 157 VLTTMFQATGDAVREQGFVKVVLNRRGQIEFGSAWKGAPFTSMFVRAVASQPYNISVIQI 216
           VLTTMFQATGDAVREQGFVKVVLNRRGQIEFGSAWKGAPFTSMFVRAVASQPYNISVIQI
Sbjct: 121 VLTTMFQATGDAVREQGFVKVVLNRRGQIEFGSAWKGAPFTSMFVRAVASQPYNISVIQI 180

Query: 217 SSPIVVPGIGRYNLPPPAPVAPEPDVAPVPAPTPLADTPSPADESPADAPSPDADSPVPT 276
           SSPIVVPGIGRYNLPPPAPVAPEPDVAPVPAPTPLADTPSPADESPADAPSPDADSPVPT
Sbjct: 181 SSPIVVPGIGRYNLPPPAPVAPEPDVAPVPAPTPLADTPSPADESPADAPSPDADSPVPT 240

Query: 277 ADAPDAPSSAPHPSADDEEDADAPSPDDEEDHSAASRGHIAGAGVMVAGLMSLYMAF 334
           ADAPDAPSSAPHPSADDEEDADAPSPDDEEDHSAASRGHIAGAGVMVAGLMSLYMAF
Sbjct: 241 ADAPDAPSSAPHPSADDEEDADAPSPDDEEDHSAASRGHIAGAGVMVAGLMSLYMAF 286

BLAST of CmoCh12G002380 vs. ExPASy TrEMBL
Match: A0A6J1KTM3 (fasciclin-like arabinogalactan protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111496292 PE=4 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 4.1e-131
Identity = 266/297 (89.56%), Postives = 270/297 (90.91%), Query Frame = 0

Query: 37  MIRQSGSILFVFVFFFLNDGWVLKVNFALITHCGILGFNITRLLNRFPEFGVFNGYLTKT 96
           M + S SI   FV  FL           L     + GFNITRLLNRFPEF VFNGYLTKT
Sbjct: 1   MNKSSVSISVTFVLLFL-----------LACSVPVSGFNITRLLNRFPEFSVFNGYLTKT 60

Query: 97  RLFEQINIRQTITILALDNGVVPSITGNSLDVIKQILSAHVILDYYDSAKFRKLSTNKPT 156
           RLFEQINIRQTITILALDNGVVPSITGNSLDVIKQILSAHVILDYYDSAKFRKLS NKPT
Sbjct: 61  RLFEQINIRQTITILALDNGVVPSITGNSLDVIKQILSAHVILDYYDSAKFRKLS-NKPT 120

Query: 157 VLTTMFQATGDAVREQGFVKVVLNRRGQIEFGSAWKGAPFTSMFVRAVASQPYNISVIQI 216
           VLTTMFQATGDAVREQGFVKVVLNRRGQIEFGSAW+GAPFTSMFVRAVASQPYN+SVIQI
Sbjct: 121 VLTTMFQATGDAVREQGFVKVVLNRRGQIEFGSAWRGAPFTSMFVRAVASQPYNVSVIQI 180

Query: 217 SSPIVVPGIGRYNLPPPAPVAPEPDVAPVPAPTPLADTPSPADESPADAPSPDADSPVPT 276
           SSPIVVPGIGRYNLPPPAPVAPEPDVAPVPAPTPLADTPSPADESPADAPSPDADSPVPT
Sbjct: 181 SSPIVVPGIGRYNLPPPAPVAPEPDVAPVPAPTPLADTPSPADESPADAPSPDADSPVPT 240

Query: 277 ADAPDAPSSAPHPSADDEEDADAPSPDDEEDHSAASRGHIAGAGVMVAGLMSLYMAF 334
           ADAPDAPSSAPHPSADDEEDADAPSPDDEEDHSAASRGHIAGAGVMVAGLMSLYMAF
Sbjct: 241 ADAPDAPSSAPHPSADDEEDADAPSPDDEEDHSAASRGHIAGAGVMVAGLMSLYMAF 285

BLAST of CmoCh12G002380 vs. ExPASy TrEMBL
Match: A0A6J1BR76 (fasciclin-like arabinogalactan protein 3 OS=Momordica charantia OX=3673 GN=LOC111004969 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 2.0e-85
Identity = 195/268 (72.76%), Postives = 215/268 (80.22%), Query Frame = 0

Query: 74  FNITRLLNRFPEFGVFNGYLTKTRLFEQINIRQTITILALDNGVVPSITGNSLDVIKQIL 133
           FNITRLLN+FP+FG FN YLTKT LFEQIN RQTIT+LALDN  V +I  NSLDVIKQIL
Sbjct: 32  FNITRLLNQFPQFGAFNDYLTKTHLFEQINTRQTITVLALDNATVAAIAQNSLDVIKQIL 91

Query: 134 SAHVILDYYDSAKFRKLSTNKPTVLTTMFQATGDAVREQGFVKVVLNRRGQIEFGSAWKG 193
           SAHVILDYYD+AKF+KL T+KPTVLTTMFQATGDAV +QGFVKVV NRRG+IEFGSA K 
Sbjct: 92  SAHVILDYYDNAKFKKLGTDKPTVLTTMFQATGDAVYQQGFVKVVHNRRGEIEFGSAAKS 151

Query: 194 APFTSMFVRAVASQPYNISVIQISSPIVVPGIGRYNLPPPAPVAPEPDV-APVP----AP 253
           APFTS  V  VASQPYNISV+QISSPIVVPGIGRYNLPPP+P APEP V AP P    AP
Sbjct: 152 APFTSRLVEPVASQPYNISVLQISSPIVVPGIGRYNLPPPSPEAPEPPVEAPAPASADAP 211

Query: 254 TPLADTPSPADESP-ADAPSPDADSPVPTADAPDAPSSAPHPSADDEEDADAPSPDDEE- 313
            P AD P     SP ADAPSP AD+P P ADAPDAP+ +P  +A D +DADAP P D + 
Sbjct: 212 APEADAPDADSPSPAADAPSPAADAPSPAADAPDAPAKSPKKAA-DADDADAPGPADADA 271

Query: 314 -DHSAASRGHIAGAGVMVAGLMSLYMAF 334
            D SAASRG IAGAGV V GL+S+ +AF
Sbjct: 272 ADDSAASRGQIAGAGV-VLGLLSVALAF 297

BLAST of CmoCh12G002380 vs. ExPASy TrEMBL
Match: A0A5A7VHN0 (Fasciclin-like arabinogalactan protein 14 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003120 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 186/297 (62.63%), Postives = 220/297 (74.07%), Query Frame = 0

Query: 41  SGSILFVFVFFFLNDGWVLKVNFALITHCGILGFNITRLLNRFPEFGVFNGYLTKTRLFE 100
           S +I  +F FFF              +   +  FNITRLLNRFPEFG FN  LTKTRLFE
Sbjct: 14  SFTIFLLFFFFF--------------STSSVSAFNITRLLNRFPEFGAFNDLLTKTRLFE 73

Query: 101 QINIRQTITILALDNGVVPSITGNSLDVIKQILSAHVILDYYDSAKFRKLSTNKPTVLTT 160
           QIN RQTIT+LAL+N  V +I+GNSLDVIKQILSAHVILDYYD AK RKLS +K TVLTT
Sbjct: 74  QINTRQTITVLALNNATVGAISGNSLDVIKQILSAHVILDYYDVAKMRKLSADKATVLTT 133

Query: 161 MFQATGDAVREQGFVKVVLNRRGQIEFGSAWKGAPFTSMFVRAVASQPYNISVIQISSPI 220
           MFQ+TGDA  +QGF+KVVLN+RG++EFGSA K AP ++  V+ VASQPYNISV+QIS+PI
Sbjct: 134 MFQSTGDAENQQGFLKVVLNKRGEVEFGSASKKAPLSAKLVKPVASQPYNISVLQISAPI 193

Query: 221 VVPGIGRYNLPPPAPVAPEPDVAPVPAPTPLADTPSPAD---ESPADAPSPDADSPVPTA 280
           V+PGIG YNLPPPAP AP   VAPV AP P AD P PA+   +SP+DAPSP + +P P+A
Sbjct: 194 VIPGIGVYNLPPPAPEAPL--VAPVEAPAPEADAPGPAEDEADSPSDAPSPASKAPAPSA 253

Query: 281 DAPDAPSSAPHPSADDEEDADAPSPDD---EEDHSAASRGHIAGAGVMVAGLMSLYM 332
           DAPDAP S+P P   D EDADAP P D   ++  S  +RG I GAG MVAGL+ L++
Sbjct: 254 DAPDAPVSSP-PKESDLEDADAPGPSDDASDDSTSEGTRGKIGGAGAMVAGLVCLWL 293

BLAST of CmoCh12G002380 vs. ExPASy TrEMBL
Match: A0A1S3BCK5 (fasciclin-like arabinogalactan protein 14 OS=Cucumis melo OX=3656 GN=LOC103488561 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 186/297 (62.63%), Postives = 220/297 (74.07%), Query Frame = 0

Query: 41  SGSILFVFVFFFLNDGWVLKVNFALITHCGILGFNITRLLNRFPEFGVFNGYLTKTRLFE 100
           S +I  +F FFF              +   +  FNITRLLNRFPEFG FN  LTKTRLFE
Sbjct: 14  SFTIFLLFFFFF--------------STSSVSAFNITRLLNRFPEFGAFNDLLTKTRLFE 73

Query: 101 QINIRQTITILALDNGVVPSITGNSLDVIKQILSAHVILDYYDSAKFRKLSTNKPTVLTT 160
           QIN RQTIT+LAL+N  V +I+GNSLDVIKQILSAHVILDYYD AK RKLS +K TVLTT
Sbjct: 74  QINTRQTITVLALNNATVGAISGNSLDVIKQILSAHVILDYYDVAKMRKLSADKATVLTT 133

Query: 161 MFQATGDAVREQGFVKVVLNRRGQIEFGSAWKGAPFTSMFVRAVASQPYNISVIQISSPI 220
           MFQ+TGDA  +QGF+KVVLN+RG++EFGSA K AP ++  V+ VASQPYNISV+QIS+PI
Sbjct: 134 MFQSTGDAENQQGFLKVVLNKRGEVEFGSASKKAPLSAKLVKPVASQPYNISVLQISAPI 193

Query: 221 VVPGIGRYNLPPPAPVAPEPDVAPVPAPTPLADTPSPAD---ESPADAPSPDADSPVPTA 280
           V+PGIG YNLPPPAP AP   VAPV AP P AD P PA+   +SP+DAPSP + +P P+A
Sbjct: 194 VIPGIGVYNLPPPAPEAPL--VAPVEAPAPEADAPGPAEDEADSPSDAPSPASKAPAPSA 253

Query: 281 DAPDAPSSAPHPSADDEEDADAPSPDD---EEDHSAASRGHIAGAGVMVAGLMSLYM 332
           DAPDAP S+P P   D EDADAP P D   ++  S  +RG I GAG MVAGL+ L++
Sbjct: 254 DAPDAPVSSP-PKESDLEDADAPGPSDDASDDSTSEGTRGKIGGAGAMVAGLVCLWL 293

BLAST of CmoCh12G002380 vs. TAIR 10
Match: AT2G24450.1 (FASCICLIN-like arabinogalactan protein 3 precursor )

HSP 1 Score: 144.4 bits (363), Expect = 1.6e-34
Identity = 107/261 (41.00%), Postives = 150/261 (57.47%), Query Frame = 0

Query: 75  NITRLLNRFPEFGVFNGYLTKTRLFEQINIRQTITILALDNGVVPSITGNSLDVIKQILS 134
           NITR+L ++PEF      L KT L   IN RQTIT+LAL+N  + SI+G   + +K IL 
Sbjct: 26  NITRVLEKYPEFSTMTELLAKTELTPIINKRQTITVLALNNDAIGSISGRPEEEVKNILM 85

Query: 135 AHVILDYYDSAKFRKLSTNKPTVLTTMFQATGDAVREQGFVKVVLNRRGQIEFGSAWKGA 194
            HV+LDY+D  K + L   K T+LTT++Q+TG   ++ GF+       G+I FGS  KGA
Sbjct: 86  NHVVLDYFDELKLKALK-EKSTLLTTLYQSTGLGQQQNGFLNCT-KSNGKIYFGSGVKGA 145

Query: 195 PFTSMFVRAVASQPYNISVIQISSPIVVPGIGR-YNLPPPAPVAPEPDVAPVPAPTPLAD 254
           P T+ ++  V   PYN+SV+QIS PIV PG+G    +PPP P++  P  AP P       
Sbjct: 146 PQTAEYITTVFRNPYNLSVVQISMPIVAPGLGSPVKVPPPPPMSSPP--APSPKKGAATP 205

Query: 255 TPSPADESP-ADAPSPDADSPVPTADAPDAPSSAPHPSADDEEDADAPSPDDEEDHSAAS 314
            P+PADE   ADAP   A    P A AP + S +P P+ D        + D+ E  S+AS
Sbjct: 206 APAPADEGDYADAPPGLAPETAP-ASAP-SESDSPAPAPDKSGKKKMAAADEAEPPSSAS 265

Query: 315 RGHIAGAGVMVAGLMSLYMAF 334
              ++   V+V G ++ ++ F
Sbjct: 266 NTGLSFGAVLVLGFVASFVGF 280

BLAST of CmoCh12G002380 vs. TAIR 10
Match: AT3G60900.1 (FASCICLIN-like arabinogalactan-protein 10 )

HSP 1 Score: 132.9 bits (333), Expect = 4.8e-31
Identity = 74/166 (44.58%), Postives = 108/166 (65.06%), Query Frame = 0

Query: 71  ILGFNITRLLNRFPEFGVFNGYLTKTRLFEQINIRQTITILALDNGVVPSITG-NSLDVI 130
           + G NIT++L+  PE+  FN YL++T+L ++IN R TIT+L L+NG + S+ G + L V+
Sbjct: 23  VSGHNITQILSDTPEYSSFNNYLSQTKLADEINSRTTITVLVLNNGAMSSLAGKHPLSVV 82

Query: 131 KQILSAHVILDYYDSAKFRKLSTNKPTVLTTMFQATGDAVREQGFVKVVLNRRGQIEFGS 190
           K  LS  V+LDYYD  K  +LS    T+ TT++Q TG A+   GFV V   + G++ FGS
Sbjct: 83  KNALSLLVLLDYYDPLKLHQLSKG-TTLTTTLYQTTGHALGNLGFVNVTDLKGGKVGFGS 142

Query: 191 AWKGAPFTSMFVRAVASQPYNISVIQISSPIVVPGIGRYNLPPPAP 236
           A  G+   S + ++V   PYNISV++I++PI+ PGI    L  PAP
Sbjct: 143 AAPGSKLDSSYTKSVKQIPYNISVLEINAPIIAPGI----LTAPAP 183

BLAST of CmoCh12G002380 vs. TAIR 10
Match: AT2G45470.1 (FASCICLIN-like arabinogalactan protein 8 )

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-29
Identity = 73/182 (40.11%), Postives = 112/182 (61.54%), Query Frame = 0

Query: 58  VLKVNFALITHCG-ILGFNITRLLNRFPEFGVFNGYLTKTRLFEQINIRQTITILALDNG 117
           +L   F+L+     +   NIT++L   P++  FN YL++T+L ++IN R TIT+L L+NG
Sbjct: 9   LLAFTFSLLAFASTVSSHNITQILADSPDYSSFNSYLSQTKLADEINSRTTITVLVLNNG 68

Query: 118 VVPSITG-NSLDVIKQILSAHVILDYYDSAKFRKLSTNKPTVLTTMFQATGDAVREQGFV 177
            + ++ G + L VIK  LS  V+LDYYD  K  K+S    T+ TT++Q TG+A    GFV
Sbjct: 69  AMSALAGKHPLSVIKSALSLLVLLDYYDPQKLHKISKG-TTLSTTLYQTTGNAPGNLGFV 128

Query: 178 KVVLNRRGQIEFGSAWKGAPFTSMFVRAVASQPYNISVIQISSPIVVPGIGRYNLPPPAP 237
            +   + G++ FGSA  G+   S + ++V   PYNIS+++I +PI+ PG+    L  PAP
Sbjct: 129 NITDLKGGKVGFGSAASGSKLDSSYTKSVKQIPYNISILEIDAPIIAPGV----LTAPAP 185

BLAST of CmoCh12G002380 vs. TAIR 10
Match: AT4G31370.1 (FASCICLIN-like arabinogalactan protein 5 precursor )

HSP 1 Score: 127.5 bits (319), Expect = 2.0e-29
Identity = 102/284 (35.92%), Postives = 146/284 (51.41%), Query Frame = 0

Query: 58  VLKVNFALITHCGILGFNITRLLNRFPEFGVFNGYLTKTRLFEQINIRQTITILALDNGV 117
           +L +   L+    +   NIT    ++ +F        KT+L   I+  QTIT+LA+ N  
Sbjct: 9   LLSLTILLVFSKVVTANNITLAFQKYSKFSTMRDLFIKTKLIAAIDKYQTITVLAVSNDA 68

Query: 118 VPSITGNSLDVIKQILSAHVILDYYDSAKFRKLSTNKPTVLTTMFQATGDAVREQGFVKV 177
           + SIT  S   ++ IL  HVILDYYD  K + +   K  +LTT++Q TG   +  GF+  
Sbjct: 69  ISSITNRSEVELRNILMTHVILDYYDELKLQGM-REKSIMLTTLYQTTGLGEQMNGFLN- 128

Query: 178 VLNRRGQIEFGSAWKGAPFTSMFVRAVASQPYNISVIQISSPIVVPGIGRYNLPPPAP-- 237
           V   +G++ FGS  K +P  + +V  V   PYN+S+IQI+ PIV PG+     PPP P  
Sbjct: 129 VSKSKGRVYFGSEVKNSPLNAEYVSTVYHNPYNLSIIQITMPIVAPGLSLAIFPPPPPYV 188

Query: 238 -VAPEP---DVAPVPAPTPLADTPSPADESPADAPSPDADSPVPTADAPDAPSSAPHPSA 297
            VAP P   D + VPAP P AD  SP    P   P+       P  D P+A S AP PSA
Sbjct: 189 HVAPYPTPMDASVVPAPGPAADDNSPDSAVPKTPPA-------PATDTPEADSPAPAPSA 248

Query: 298 DDE--EDADAPSPDDEEDHSAASRGHIAGAGVMVAGLMSLYMAF 334
           D+E  E AD   P      S+AS+   +   +++   ++ +  F
Sbjct: 249 DNEKIEAADKAKPS-----SSASKAGWSFDVILLLAFLASFAGF 278

BLAST of CmoCh12G002380 vs. TAIR 10
Match: AT3G12660.1 (FASCICLIN-like arabinogalactan protein 14 precursor )

HSP 1 Score: 125.6 bits (314), Expect = 7.7e-29
Identity = 94/242 (38.84%), Postives = 133/242 (54.96%), Query Frame = 0

Query: 43  SILFVFVFFFLNDGWVLKVNFALITHCGILGFNITRLLNRFPEFGVFNGYLTKTRLFEQI 102
           S L +F FFF +       N           FNIT +LN   +F  FN  L++T+L   I
Sbjct: 3   SSLTIFFFFFASTFLYTSSN----------SFNITNILNEHDDFSNFNQLLSETQLASTI 62

Query: 103 NIRQTITILALDNGVVPSITGNSLDVIKQILSAHVILDYYDSAKFRKLSTNKPTVLTTMF 162
           N RQTIT+L + NG + S++G    VIK+ILS H++LDYYD  K + LS  K  +LTT+F
Sbjct: 63  NKRQTITVLVVSNGALSSLSGQPTSVIKKILSLHIVLDYYDQKKLKNLS-KKTVLLTTLF 122

Query: 163 QATGDAVREQGFVKVVLNRRGQIEFGSAWKGAPFTSMFVRAVASQPYNISVIQISSPIVV 222
           Q++G A  +QGF+   + + G + FGSA  G+   +     VA+ P+NISV+ ISS I++
Sbjct: 123 QSSGLARGQQGFLNATVMKNGDVAFGSAVPGSSLDAQLQDTVAALPFNISVLHISSAIMI 182

Query: 223 PGIGRYNLPPPAPVAPEPDVAPVPAPTPLADTPSPADESPADAPSPDADSPVPTADAPDA 282
              G  N P  +P++P     P PA +P  D     DE P+ AP   AD P   A + + 
Sbjct: 183 DVKGD-NAPTASPLSPVSS-PPRPAESP-NDDGQDFDEPPSSAPGAAADEPSENAGSANG 230

Query: 283 PS 285
            S
Sbjct: 243 VS 230

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9ZQ232.3e-3341.00Fasciclin-like arabinogalactan protein 3 OS=Arabidopsis thaliana OX=3702 GN=FLA3... [more]
Q9LZX46.8e-3044.58Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA... [more]
O221262.2e-2840.11Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana OX=3702 GN=FLA8... [more]
O495862.8e-2835.92Fasciclin-like arabinogalactan protein 5 OS=Arabidopsis thaliana OX=3702 GN=FLA5... [more]
Q9LTW91.1e-2738.84Fasciclin-like arabinogalactan protein 14 OS=Arabidopsis thaliana OX=3702 GN=FLA... [more]
Match NameE-valueIdentityDescription
A0A6J1GIP61.8e-13490.91fasciclin-like arabinogalactan protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1KTM34.1e-13189.56fasciclin-like arabinogalactan protein 3 OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
A0A6J1BR762.0e-8572.76fasciclin-like arabinogalactan protein 3 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A5A7VHN01.5e-8062.63Fasciclin-like arabinogalactan protein 14 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A1S3BCK51.5e-8062.63fasciclin-like arabinogalactan protein 14 OS=Cucumis melo OX=3656 GN=LOC10348856... [more]
Match NameE-valueIdentityDescription
AT2G24450.11.6e-3441.00FASCICLIN-like arabinogalactan protein 3 precursor [more]
AT3G60900.14.8e-3144.58FASCICLIN-like arabinogalactan-protein 10 [more]
AT2G45470.11.5e-2940.11FASCICLIN-like arabinogalactan protein 8 [more]
AT4G31370.12.0e-2935.92FASCICLIN-like arabinogalactan protein 5 precursor [more]
AT3G12660.17.7e-2938.84FASCICLIN-like arabinogalactan protein 14 precursor [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..255
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..314
NoneNo IPR availablePANTHERPTHR32382:SF6ENDOSPERM SPECIFIC PROTEIN-LIKEcoord: 45..330
IPR033254Fasciclin-like arabinogalactan proteinPANTHERPTHR32382FASCICLIN-LIKE ARABINOGALACTAN PROTEINcoord: 45..330
IPR036378FAS1 domain superfamilySUPERFAMILY82153FAS1 domaincoord: 81..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G002380.1CmoCh12G002380.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0046658 anchored component of plasma membrane