CmoCh12G002070 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGCGGAATTTTGATACTTCTTGTTCACATTTATTTTTATTATCTTATTCTGAAGCAGCTCGAATGGATATATCTTCAGCAGGAAGAAGAAGAAAAGGACAGTAAGAAGAAGAACGAAGAAGACGAGAGGAAGAACAACATTGATTCTTTTGACAAAAATAGTCAAAATTATTAAGCAAAAACAGAAGCCCATTATGGTTTCAGACCCCAAACCCACTGTTTCGAAGGTCAAACTAGGTCATCAAGATGGCGGCTCCAGGTTAAAGCTCGAATCCTCCGACAACAAGAAGAACAACAGCTCAGTTTCCTCTTCCAAACACAAATCCGTCTCTGTTCTTCCCAAATCCGAGGTACCCATTTAGCAAAATTTAAGGTTTATTATTGTCTGATTCAGATTTAGCTTCCGCGAATTGGGGATTTTGTGTTTGTCTGGTTGGATTAATGTTTTGTAACGCATCTAATTTGTCGATTGGTAACCGTAGCGGATTTGGGGCAATTGAAATTTGGATTACTCCGATTGGGCAATTAGGTTTAGATTCTAAGTGGGGTTGTTTGTTTTCTTCTTGGAAGGTGAAATCTAAAACAATAACGAGTTCTTCAAAGACCACAACAAAAGCTACTACTTCTACTGCTAAAGTGAGAGAAAAGAAAGTGTTCAATTTGGCTGGTCAGAAATACGATCCACCTGAAGAGGTTTGAATGTTTTTTTCCTTGTTTGTTTTTAGTTTATGTTATTGATGAACTCATCATTGTTGTCGTGTTCGTATGTTGGTGAGCAGAGAGAGCCGCTTCGGATATTTTATGAATCCTTGTCGAAACAGATATCAACAAGTGAAATGGCAGAATTTTGGTGCGGTTTGTTTTCTGATTTTCTTTTGAGCATTCATTGTCTGTTTAATCCTTTGAGTTCTTCATTGTTGTCGTGTTTGTATGTGATCCTTTGGTTTATGATACTCTGTGTTAGCATTTGGTTTGATGCTTCCTCAATCTTGCTGTTGTGAGTGCTTTTCGTAGCAGTCGGTTTCGTTTTGTTTGACGAAAAGCTAGTGGTACTAGTGAAATCGGACGACGTTTGTGAGATCCCATATAGGTTGGGGAGGAGAACGGAGTATTCTTTATAAGGGTGTGGAAATCTCTTCCTAACAGACACGTTTTAAAACCTAGAGGGAAAACACGGAAGGGAAACCCCATAGAGGACAATATCTGCTAGCGGTGGGTTTGGGATGTTACAAATGGTATTAGAGTCAGACATCGGGCGATGTGTCAGTGAGGAGGCTGAACCCCAAAGGGGTGGACACAAGGCAGTGTGTCAGCAAGGACTCTAGGCCTTGGGGGATGGGTTGGGGGGTCTCACATCGATTAGAGAAGGGAACTAGTGTCAACGAGGACACTAGATCCCGAAGGGGGGTGGATTATGAGATCCCACATCGGTTGGGGAGGAGAACGAAGAATTCTTTACAAGGGTGTGGAAACCTCTTCCTAGCAGACGCGTTTTAAAACTTTGAGGGGAAGTCCGGAAGGGAAAGCCCAAAAAAGACCATATCTAGCGGTTGGCTTGGGCCGTTACAAATTGCTAGATTTGAATTTTAGGGACTAAATGCAACCAAAGGCATACGCGAGCGATTGATTTTTAGGGGTAGATATGTTATGTCGAACAACTTTACGACTCAACTAAGTAGTTCCTTTTGGTTTGGGTTATTCCATGTTTCGAGACTTGGTCGATATTTTGGTAACTTGGACAAGATGAACTATTGGATTAAGACTGGAACTTTTTGTGTCTGATTTGAACGTTGGGATAACTTGCTAGCCCATATTGGTTGAGGAGGAGAACAAAACATTCTTTATAAAGGTGTGGAAACCTCTCCCTAATAGACGCGTTTTAAAAACCTTGAGGGGAATCCTGGAAGAGAAAGCCCAAAGAGGACAATATCAGCTAGCGGTAGGCTTACGCTTGTCCTTCGCCCGCATCTGATCCTATAAGGCGTGCAATGTGTTGTTTATTGACGTGTAGATGGCATGTTGTTCTAATAGCATAGGTTTTTTTTTTTTTTTCTTGGAAGTTAATGTTATATTTAGTGTTGCAACCATATTGTTATTTATGGACCTCAAGGGGTGGTCTTTGGCGGTAAGGGCTATAGTGAGCTCACGGAACGATGTTTCGGTGGAAGGGTTTCTCTTTTCCACCCCGAACAAGGTTGTCATTCAAAGATGGTTTAGTCTACACGTAGAAATGGTTAAGTCATCTGTCAATAGAATCCTCAAGTGTCGAATAAAGAAGTTGTGAGTCTCGAAAGTATAATCAAAAGTAACTCAAGTGTTAAACAAATAGTGTAGTTTGTTCGAGGTCTCCAAAGAAGGAGTCGAGCCTCGATTAAGGGGAGACTATTCGAGGGTTCCATAAGCCTCAGGGGAGTCTCTATGGTGTACTTTGTTCGAGGGGAGGATTCTTGAAGCCTCGTTTAAGGGGAAGCTATTCGAGGGATCCATAAGCCTCAGGGGAGGCTCTATGGTGTACTTTGTTCGATTGGAGGATCGTTGAGGATTGTTGGAAGGGAGTCCCGTATTGGCTAATTAAAGCGATGATCATGGGTTAATAAGTACGAAATATATTTTCATTGGTACAAGGCTTTTTTGAGAAACCAAAAGTAAAGTGACGAGAGCTTATGCTCAAAGTGATCAGTATCATACCACCGTGAGGTTCGTGATTCCTAACAAATTCTTCATTCTCTGGCTGAACCTTAGTGTGACTTTTTGGCTGTTGGGTCATCAAGTTCTTTTATTTATTTTATACTCCGACTTCCCTCCGTGAAAAATATCCCCATATTACTTGTCTTTGTGGATATATATTTTTGATCTCCTGGTTAAGAACATATATTTGAATCAGTTGAGCTATGTTCATATTGGTGACCTGACCAGTTTAAATTTCTAGGATGATGGAGCATGGCATGTTATCTCCCGAAAAGGCGAAAAAGGCGTACGAGAAGAAACTGAGAAGACAAAAGGAACAAAGGACCGGGACTCCGATTAAATCATTAAAACCACCGAGCAGACCAGAGAGCTCACAGAGGCCACAGCAGCCATCGAAGAATGGCGATCTAAAAGCAAAGAAAAAGATCACGAACAATAGCGATGACGACGACAATGACTTCATTTTAAGCCCCAAGAGAAGAAAAATGTAGGAAAAACGCCTGCCAACGCCCACCTCCCCCTCGTTTTTAGTAGCATACTTTTCGAAAACTACAGAGATTATCATAACCCAGTATTTATCAGGACGTTCTTTTATGGTTCAAAACCTTCTCATACAACGTGTAATTACTCGGGTCGAGTACGACACCCAATCAATAACTATGGACCCATCTGAGAAACTCGAGCCTAAATTTCCTCTCGGCCTTGGAAGTAAACAAAACAG GGCGGAATTTTGATACTTCTTGTTCACATTTATTTTTATTATCTTATTCTGAAGCAGCTCGAATGGATATATCTTCAGCAGGAAGAAGAAGAAAAGGACAGTAAGAAGAAGAACGAAGAAGACGAGAGGAAGAACAACATTGATTCTTTTGACAAAAATAGTCAAAATTATTAAGCAAAAACAGAAGCCCATTATGGTTTCAGACCCCAAACCCACTGTTTCGAAGGTCAAACTAGGTCATCAAGATGGCGGCTCCAGGTTAAAGCTCGAATCCTCCGACAACAAGAAGAACAACAGCTCAGTTTCCTCTTCCAAACACAAATCCGTCTCTGTTCTTCCCAAATCCGAGGTGAAATCTAAAACAATAACGAGTTCTTCAAAGACCACAACAAAAGCTACTACTTCTACTGCTAAAGTGAGAGAAAAGAAAGTGTTCAATTTGGCTGGTCAGAAATACGATCCACCTGAAGAGAGAGAGCCGCTTCGGATATTTTATGAATCCTTGTCGAAACAGATATCAACAAGTGAAATGGCAGAATTTTGGATGATGGAGCATGGCATGTTATCTCCCGAAAAGGCGAAAAAGGCGTACGAGAAGAAACTGAGAAGACAAAAGGAACAAAGGACCGGGACTCCGATTAAATCATTAAAACCACCGAGCAGACCAGAGAGCTCACAGAGGCCACAGCAGCCATCGAAGAATGGCGATCTAAAAGCAAAGAAAAAGATCACGAACAATAGCGATGACGACGACAATGACTTCATTTTAAGCCCCAAGAGAAGAAAAATGTAGGAAAAACGCCTGCCAACGCCCACCTCCCCCTCGTTTTTAGTAGCATACTTTTCGAAAACTACAGAGATTATCATAACCCAGTATTTATCAGGACGTTCTTTTATGGTTCAAAACCTTCTCATACAACGTGTAATTACTCGGGTCGAGTACGACACCCAATCAATAACTATGGACCCATCTGAGAAACTCGAGCCTAAATTTCCTCTCGGCCTTGGAAGTAAACAAAACAG ATGGTTTCAGACCCCAAACCCACTGTTTCGAAGGTCAAACTAGGTCATCAAGATGGCGGCTCCAGGTTAAAGCTCGAATCCTCCGACAACAAGAAGAACAACAGCTCAGTTTCCTCTTCCAAACACAAATCCGTCTCTGTTCTTCCCAAATCCGAGGTGAAATCTAAAACAATAACGAGTTCTTCAAAGACCACAACAAAAGCTACTACTTCTACTGCTAAAGTGAGAGAAAAGAAAGTGTTCAATTTGGCTGGTCAGAAATACGATCCACCTGAAGAGAGAGAGCCGCTTCGGATATTTTATGAATCCTTGTCGAAACAGATATCAACAAGTGAAATGGCAGAATTTTGGATGATGGAGCATGGCATGTTATCTCCCGAAAAGGCGAAAAAGGCGTACGAGAAGAAACTGAGAAGACAAAAGGAACAAAGGACCGGGACTCCGATTAAATCATTAAAACCACCGAGCAGACCAGAGAGCTCACAGAGGCCACAGCAGCCATCGAAGAATGGCGATCTAAAAGCAAAGAAAAAGATCACGAACAATAGCGATGACGACGACAATGACTTCATTTTAAGCCCCAAGAGAAGAAAAATGTAG MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM Homology
BLAST of CmoCh12G002070 vs. ExPASy TrEMBL
Match: A0A6J1GJC9 (uncharacterized protein LOC111454380 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454380 PE=4 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 5.2e-97 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
BLAST of CmoCh12G002070 vs. ExPASy TrEMBL
Match: A0A6J1KPA8 (uncharacterized protein LOC111496374 OS=Cucurbita maxima OX=3661 GN=LOC111496374 PE=4 SV=1) HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93 Identity = 194/199 (97.49%), Postives = 196/199 (98.49%), Query Frame = 0
BLAST of CmoCh12G002070 vs. ExPASy TrEMBL
Match: A0A1S3BCG5 (uncharacterized protein LOC103488185 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488185 PE=4 SV=1) HSP 1 Score: 281.2 bits (718), Expect = 3.4e-72 Identity = 169/209 (80.86%), Postives = 181/209 (86.60%), Query Frame = 0
BLAST of CmoCh12G002070 vs. ExPASy TrEMBL
Match: A0A0A0LLY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374600 PE=4 SV=1) HSP 1 Score: 280.8 bits (717), Expect = 4.4e-72 Identity = 169/209 (80.86%), Postives = 181/209 (86.60%), Query Frame = 0
BLAST of CmoCh12G002070 vs. ExPASy TrEMBL
Match: A0A6J1K794 (uncharacterized protein LOC111491788 OS=Cucurbita maxima OX=3661 GN=LOC111491788 PE=4 SV=1) HSP 1 Score: 274.2 bits (700), Expect = 4.2e-70 Identity = 161/202 (79.70%), Postives = 177/202 (87.62%), Query Frame = 0
BLAST of CmoCh12G002070 vs. TAIR 10
Match: AT5G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 150.2 bits (378), Expect = 1.7e-36 Identity = 95/169 (56.21%), Postives = 120/169 (71.01%), Query Frame = 0
BLAST of CmoCh12G002070 vs. TAIR 10
Match: AT1G19990.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11600.1); Has 11256 Blast hits to 7192 proteins in 541 species: Archae - 6; Bacteria - 629; Metazoa - 4714; Fungi - 936; Plants - 545; Viruses - 34; Other Eukaryotes - 4392 (source: NCBI BLink). ) HSP 1 Score: 87.4 bits (215), Expect = 1.4e-17 Identity = 81/205 (39.51%), Postives = 102/205 (49.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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