CmoCh12G001760 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G001760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionFSH1 domain-containing protein
LocationCmo_Chr12: 1148054 .. 1148321 (-)
RNA-Seq ExpressionCmoCh12G001760
SyntenyCmoCh12G001760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGACAGGTGAGCGAGACCCGATGAAGCCCCATGGAGTGAAGCTTCTCGAATCATTTATTGACCCATTAGTAATTTATCATTCTAAAGGCCACATAGTACCTACACTCGGTAATATTTACATTTAATTCACATTTATTTTCTTAATTCTTTATGCTAATTTATATTATATTATCAACCTTATATTTTATATTTTCAGATCACGAAGCTGTGAAGATTATGCAGACTTTCATTCATGTGATTTCAAACACATTCAATGTTTAA

mRNA sequence

ATGGTGGTGACAGGTGAGCGAGACCCGATGAAGCCCCATGGAGTGAAGCTTCTCGAATCATTTATTGACCCATTAGTAATTTATCATTCTAAAGGCCACATAGTACCTACACTCGATCACGAAGCTGTGAAGATTATGCAGACTTTCATTCATGTGATTTCAAACACATTCAATGTTTAA

Coding sequence (CDS)

ATGGTGGTGACAGGTGAGCGAGACCCGATGAAGCCCCATGGAGTGAAGCTTCTCGAATCATTTATTGACCCATTAGTAATTTATCATTCTAAAGGCCACATAGTACCTACACTCGATCACGAAGCTGTGAAGATTATGCAGACTTTCATTCATGTGATTTCAAACACATTCAATGTTTAA

Protein sequence

MVVTGERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVISNTFNV
Homology
BLAST of CmoCh12G001760 vs. ExPASy TrEMBL
Match: A0A6J1GHI1 (esterase C25G4.2-like OS=Cucurbita moschata OX=3662 GN=LOC111454009 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 5   GERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVISNTFNV 60
           GERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVISNTFNV
Sbjct: 184 GERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVISNTFNV 238

BLAST of CmoCh12G001760 vs. ExPASy TrEMBL
Match: A0A6J1GGH5 (esterase AAEL000016-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454010 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 5   GERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVISNTFNV 60
           GERDPMKP GVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIH+ISNT +V
Sbjct: 184 GERDPMKPRGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHMISNTSDV 238

BLAST of CmoCh12G001760 vs. ExPASy TrEMBL
Match: A0A6J1KP33 (esterase FUS5-like OS=Cucurbita maxima OX=3661 GN=LOC111496309 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 6   ERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVISN 56
           E+DPM+ +GVKLLESFI+PLVIYHS+GH+VPTLD +AVKIMQTFI +ISN
Sbjct: 185 EQDPMRRYGVKLLESFIEPLVIYHSQGHVVPTLDCKAVKIMQTFIDMISN 234

BLAST of CmoCh12G001760 vs. ExPASy TrEMBL
Match: A0A6J1GGK5 (esterase AAEL000016-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454010 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 5   GERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEA 43
           GERDPMKP GVKLLESFIDPLVIYHSKGHIVPTLD +A
Sbjct: 184 GERDPMKPRGVKLLESFIDPLVIYHSKGHIVPTLDCQA 221

BLAST of CmoCh12G001760 vs. ExPASy TrEMBL
Match: A0A0A0LNX4 (FSH1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G369800 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 5   GERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVISNTFN 59
           GE D + PHG KLLES+I+P +I H KGH +P LD +A+++M++FIH IS   N
Sbjct: 192 GEEDFLMPHGKKLLESYIEPTIITHPKGHTIPRLDDKALEVMESFIHRISKILN 245

BLAST of CmoCh12G001760 vs. TAIR 10
Match: AT5G65400.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 5.0e-08
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 5   GERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVI 54
           GERD +K  G  L+ESF++P+VI+HS GHI+P LD +A + M +F   I
Sbjct: 189 GERDFLKIEGEVLVESFVEPVVIHHSGGHIIPKLDTKAEETMLSFFQSI 237

BLAST of CmoCh12G001760 vs. TAIR 10
Match: AT4G24380.1 (INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 6.6e-08
Identity = 21/51 (41.18%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 5   GERDPMKPHGVKLLESFIDPLVIYHSKGHIVPTLDHEAVKIMQTFIHVISN 56
           GE D +KP+G +L+ES+ +P+V++H KGH VP LD ++++ +  FI  + +
Sbjct: 166 GETDFLKPYGTQLIESYKNPVVVHHPKGHTVPRLDEKSLEKVTAFIDTLEH 216

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GHI12.5e-23100.00esterase C25G4.2-like OS=Cucurbita moschata OX=3662 GN=LOC111454009 PE=4 SV=1[more]
A0A6J1GGH51.5e-2092.73esterase AAEL000016-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11145401... [more]
A0A6J1KP331.8e-1378.00esterase FUS5-like OS=Cucurbita maxima OX=3661 GN=LOC111496309 PE=4 SV=1[more]
A0A6J1GGK53.8e-1192.11esterase AAEL000016-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11145401... [more]
A0A0A0LNX41.3e-0853.70FSH1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G369800 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT5G65400.15.0e-0851.02alpha/beta-Hydrolases superfamily protein [more]
AT4G24380.16.6e-0841.18INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and deri... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G001760.1CmoCh12G001760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus