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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTGGCCGACATACTTCTTCAAATTGCTCTCATCCTCGTAATGGTCGTCATGTTCTTGGCGATGCATAATATTCCACAGAGATTCTTTGCGAAGCTCCGGTTTCGTTTTCGTTCCGATGTCGAATCCAAACGACACTTCGTGAGAGGCGCTCAGCTTCTCGCTCGAGCAAGATCTGCTCCGTCGCGCTCATCGGCGACGTCGTTGGCTGAACAAGTGGTAGCGGAAGCCGATAAGGCCATCGCTCTCGATCCTAAGGATGCCGCTGCTCACATCCTCAAGGCTTTGGCTCTCGATATTCAAGGATTCAAGACCTCTGCTCTTGAATCACTCGATACGGCTCTGTCGCCCCTCGCCGCTAAGTCGCTCAGCAACGAGGAGCGAGGCGACGCGTTGTACAAACGAGCTGAGTTGAAGATGTCCACGAATCGGCGAACCGTAGTTGACTCGGCTTTGGCTGACTTGACCGAGTCTGTGACGCTGAGTCAGAATGCGAATGCCTATTGTTGGTTGGGGAAATGCTATGAGATGAAGAAACTAAGAGGAGAAGCTAAGAAAGCATATGAAGAAGCGTTGAACATCGAGCCACGATTATCCAAAGCCCGGGAGGCATTGGAACGCCTATCATCATCGTGA mRNA sequence ATGGTGGCCGACATACTTCTTCAAATTGCTCTCATCCTCGTAATGGTCGTCATGTTCTTGGCGATGCATAATATTCCACAGAGATTCTTTGCGAAGCTCCGGTTTCGTTTTCGTTCCGATGTCGAATCCAAACGACACTTCGTGAGAGGCGCTCAGCTTCTCGCTCGAGCAAGATCTGCTCCGTCGCGCTCATCGGCGACGTCGTTGGCTGAACAAGTGGTAGCGGAAGCCGATAAGGCCATCGCTCTCGATCCTAAGGATGCCGCTGCTCACATCCTCAAGGCTTTGGCTCTCGATATTCAAGGATTCAAGACCTCTGCTCTTGAATCACTCGATACGGCTCTGTCGCCCCTCGCCGCTAAGTCGCTCAGCAACGAGGAGCGAGGCGACGCGTTGTACAAACGAGCTGAGTTGAAGATGTCCACGAATCGGCGAACCGTAGTTGACTCGGCTTTGGCTGACTTGACCGAGTCTGTGACGCTGAGTCAGAATGCGAATGCCTATTGTTGGTTGGGGAAATGCTATGAGATGAAGAAACTAAGAGGAGAAGCTAAGAAAGCATATGAAGAAGCGTTGAACATCGAGCCACGATTATCCAAAGCCCGGGAGGCATTGGAACGCCTATCATCATCGTGA Coding sequence (CDS) ATGGTGGCCGACATACTTCTTCAAATTGCTCTCATCCTCGTAATGGTCGTCATGTTCTTGGCGATGCATAATATTCCACAGAGATTCTTTGCGAAGCTCCGGTTTCGTTTTCGTTCCGATGTCGAATCCAAACGACACTTCGTGAGAGGCGCTCAGCTTCTCGCTCGAGCAAGATCTGCTCCGTCGCGCTCATCGGCGACGTCGTTGGCTGAACAAGTGGTAGCGGAAGCCGATAAGGCCATCGCTCTCGATCCTAAGGATGCCGCTGCTCACATCCTCAAGGCTTTGGCTCTCGATATTCAAGGATTCAAGACCTCTGCTCTTGAATCACTCGATACGGCTCTGTCGCCCCTCGCCGCTAAGTCGCTCAGCAACGAGGAGCGAGGCGACGCGTTGTACAAACGAGCTGAGTTGAAGATGTCCACGAATCGGCGAACCGTAGTTGACTCGGCTTTGGCTGACTTGACCGAGTCTGTGACGCTGAGTCAGAATGCGAATGCCTATTGTTGGTTGGGGAAATGCTATGAGATGAAGAAACTAAGAGGAGAAGCTAAGAAAGCATATGAAGAAGCGTTGAACATCGAGCCACGATTATCCAAAGCCCGGGAGGCATTGGAACGCCTATCATCATCGTGA Protein sequence MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSKAREALERLSSS
Homology
BLAST of CmoCh12G001580 vs. ExPASy TrEMBL
Match: A0A6J1GK03 (uncharacterized protein LOC111454602 OS=Cucurbita moschata OX=3662 GN=LOC111454602 PE=4 SV=1) HSP 1 Score: 375.6 bits (963), Expect = 1.4e-100 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query: 1 MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA
Sbjct: 1 MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
Query: 61 PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120
PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA
Sbjct: 61 PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120
Query: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180
KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL
Sbjct: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180
Query: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 212
RGEAKKAYEEALNIEPRLSKAREALERLSSS
Sbjct: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 211
BLAST of CmoCh12G001580 vs. ExPASy TrEMBL
Match: A0A6J1KRQ5 (uncharacterized protein LOC111496615 OS=Cucurbita maxima OX=3661 GN=LOC111496615 PE=4 SV=1) HSP 1 Score: 371.7 bits (953), Expect = 2.0e-99 Identity = 208/211 (98.58%), Postives = 210/211 (99.53%), Query Frame = 0
Query: 1 MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA
Sbjct: 1 MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
Query: 61 PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120
PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA
Sbjct: 61 PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120
Query: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180
KSLSNEERGDALYKRAELKMSTNRR VVDSA+ADLTESVTLSQNANAYCWLGKCYEMKKL
Sbjct: 121 KSLSNEERGDALYKRAELKMSTNRRAVVDSAMADLTESVTLSQNANAYCWLGKCYEMKKL 180
Query: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 212
RGEAKKAYEEALNIEPRLSKAREALERLS+S
Sbjct: 181 RGEAKKAYEEALNIEPRLSKAREALERLSTS 211
BLAST of CmoCh12G001580 vs. ExPASy TrEMBL
Match: A0A5A7VBU3 (TPR domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004320 PE=4 SV=1) HSP 1 Score: 346.7 bits (888), Expect = 7.0e-92 Identity = 195/211 (92.42%), Postives = 204/211 (96.68%), Query Frame = 0
Query: 1 MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1 MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60
Query: 61 PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120
PSRSSATSLAE+VVAEA+KAIALDPKDAAAHILKALALD+QGFKTSALESLDTALSPL A
Sbjct: 61 PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDVQGFKTSALESLDTALSPLVA 120
Query: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180
KSLS+EERGDAL+KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYEMKKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEMKKL 180
Query: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 212
R EAKKAYEEALNIEPRLS AREALERLSSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 211
BLAST of CmoCh12G001580 vs. ExPASy TrEMBL
Match: A0A1S3BC86 (uncharacterized protein LOC103488119 OS=Cucumis melo OX=3656 GN=LOC103488119 PE=4 SV=1) HSP 1 Score: 346.7 bits (888), Expect = 7.0e-92 Identity = 195/211 (92.42%), Postives = 204/211 (96.68%), Query Frame = 0
Query: 1 MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1 MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60
Query: 61 PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120
PSRSSATSLAE+VVAEA+KAIALDPKDAAAHILKALALD+QGFKTSALESLDTALSPL A
Sbjct: 61 PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDVQGFKTSALESLDTALSPLVA 120
Query: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180
KSLS+EERGDAL+KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYEMKKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEMKKL 180
Query: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 212
R EAKKAYEEALNIEPRLS AREALERLSSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 211
BLAST of CmoCh12G001580 vs. ExPASy TrEMBL
Match: A0A0A0LPL8 (TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G370460 PE=4 SV=1) HSP 1 Score: 342.8 bits (878), Expect = 1.0e-90 Identity = 194/211 (91.94%), Postives = 202/211 (95.73%), Query Frame = 0
Query: 1 MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1 MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60
Query: 61 PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120
PSRSSATSLAE+VVAEA+KAIALDPKDAAAHILKALALD QGFKTSALESLDTALSPL A
Sbjct: 61 PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120
Query: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180
KSLS+EERGDAL+KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYE KKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL 180
Query: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 212
R EAKKAYEEALNIEPRLS AREALERLSSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 211
BLAST of CmoCh12G001580 vs. TAIR 10
Match: AT5G65520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 143.3 bits (360), Expect = 2.3e-34 Identity = 87/196 (44.39%), Postives = 132/196 (67.35%), Query Frame = 0
Query: 4 DILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSR 63
+ ++Q A++++ +VMF A+ + QR K R + R+ ++++R ++ ++LLARAR+ P +
Sbjct: 5 ETIIQGAILVLTLVMFWAIKYLSQRGLTKFRTKHRATLQTQRQLIQASRLLARARTTPKK 64
Query: 64 SSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAAKSL 123
S + SLA+ + EAD IA+ P DAA HI++ALALD+ G TSAL+S D AL+ KSL
Sbjct: 65 SQSQSLAKTALTEADNVIAISPDDAAGHIVRALALDLLGHHTSALKSFDMALTYPRLKSL 124
Query: 124 SNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTL---SQNANAYCWLGKCYEMKKL 183
S ER DAL KRAE+K++ NRR +DSA+ DL E+V L + A + LG+CYE K L
Sbjct: 125 SVGERADALVKRAEMKLAVNRRRRIDSAVEDLEEAVRLAAGTDTARLFRLLGECYEFKGL 184
Query: 184 RGEAKKAYEEALNIEP 197
+ +A+ A+ EAL +P
Sbjct: 185 KEKAQWAFNEALKAQP 200
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1GK03 | 1.4e-100 | 100.00 | uncharacterized protein LOC111454602 OS=Cucurbita moschata OX=3662 GN=LOC1114546... | [more] |
| A0A6J1KRQ5 | 2.0e-99 | 98.58 | uncharacterized protein LOC111496615 OS=Cucurbita maxima OX=3661 GN=LOC111496615... | [more] |
| A0A5A7VBU3 | 7.0e-92 | 92.42 | TPR domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00... | [more] |
| A0A1S3BC86 | 7.0e-92 | 92.42 | uncharacterized protein LOC103488119 OS=Cucumis melo OX=3656 GN=LOC103488119 PE=... | [more] |
| A0A0A0LPL8 | 1.0e-90 | 91.94 | TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G370460 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G65520.1 | 2.3e-34 | 44.39 | Tetratricopeptide repeat (TPR)-like superfamily protein | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | Tetratricopeptide repeat domain | coord: 67..146
e-value: 4.2E-5
score: 25.3 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | Tetratricopeptide repeat domain | coord: 147..210
e-value: 2.0E-8
score: 36.1 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | SUPERFAMILY | 48452 | TPR-like | coord: 71..199 |
| None | No IPR available | PANTHER | PTHR26312 | TETRATRICOPEPTIDE REPEAT PROTEIN 5 | coord: 4..208 |
| None | No IPR available | PANTHER | PTHR26312:SF163 | SUBFAMILY NOT NAMED | coord: 4..208 |
| IPR019734 | Tetratricopeptide repeat | PROSITE | PS50005 | TPR | coord: 165..198
score: 9.2339 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0016740 |
transferase activity |
|
