CmoCh12G000870 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G000870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	MADS-box transcription factor
Location	Cmo_Chr12: 471646 .. 473973 (+)
RNA-Seq Expression	CmoCh12G000870
Synteny	CmoCh12G000870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAGGTAAGGTGGAGCTGAAGAAGATAGAGAACAAAATAAACCGACAGGTGACCTTCACAAAACGAAGAAATGGCCTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTGGCACTCATCGTCTTCTCCACCGGTGGCAAGCTCTATGAATTCTCCAGCTCTTCCAGGCATGTCTCGATTCGAATCTCTAACCTTTTTTGCTCGGAGCGTTCGTGTAGCTCCGTGCTTGATTTGATCTGTTTATGTCGAACTCGAGACGGGTTCTTTTCGTTAACCAATTGCAGTATAGCCAAGACGTTGGAGAGGTATCAAAGACATAGCTATGGAGCTTTGGCAGCCTCCCATCATCTCAAGGACACCGAGGTCATTTCTCGTCTTTGCTCGATTAGGTTTAGTTACATAAAATGGGACCCAATTATGTTCGGTAAAAGTGATTTTAACTATTTCAAAATTACTCTCGTGCCCTTGGTCGGAATGTTTTTGGACACAGAAATGGTACGAGGAGTATTTGAAGCTGAAAGAAGAAGTGGAAGGTCTGCAGCATTCACAGAGGTGGCGCAACCCTCCTCCTCCGCCGTGGGAGGATCTTCTTCAAGCTGTTCTTCATTCTTATTTAATTATTTAATTTTAAAAAAAAAACCCTTTTTTCTCTTAATTAATTATTATTTTTGTGTTATGTAGACGAATTCTTGGAGAAGAATTGGAAGATTTGGAGACGAAGGAATTGGACCAACTCGAAATTCAATTGGAAACGTCTCTGAAGCAAATCAGGTTCACTAAGGTAAAATTAATGCTCGAGTTCAACGAGCGGAGGTAGCAAATTCGAACCCGATCTTGTGATCAAGGGCACAAATTTTATGACCGTTGAGTTATGCTCGGGTTTTTTTTTAATTAATTATTGTGAATTATTGAAATTTTGCAGAACCAAACGGTGTTTGATCAGTTATCTGAGCTAAAAAAGAAGGTAATTTTTTTTTTTACCGTTGGATGTTTGAAATTAAATGGGTTAATTTTCTTCATTTGTTTATAGGAAGAATTACTGCTGGAAACTAATCAAGCTTTGAGGAGGAAGGTATGGAATAATTAAGTGCACTAATTAATTTATTATGAAATTTAATATTTATTTGGTTGAAATTAGGTTAATATATTAAAAACATCCAAGAATTGATGATGACGTGATTTTTTTTACTGCACTGAGTTACCCCTAAACTTAGTGGTAGGTAAAAAAAAATCTTTATTATTTAACCTGTCGAGTCTCGACTTGAACCCGCCAGAAATGAGATGGGTAATTCTAGTTTCTGTATGAAAGTACCACGTCGTCGGCTAATTTAGGGAATGATTATGGATTTATAATTAAAAAAAAATACTCTCTCCATCGGAATGAGGCCTTTTGGGGAAGCTCAATGCAAAGCCACAAGCGCTTATACTCAAAGTGGACAATAACATACCATTGTGGAGACTCGTGTTCATCTAATATGGCATCAGAGCCCATAGTATCAGAGTCATGCTCAAAACTTAGCTATGTCAATAGAATCCTCAAAAGAAAAAGGAGTCGAACCTCGATTAAAGGGAGGTGTTGGATGAAAGTCCCATATCGACTAATTTAGCGAGAGTCGTGATCCTACTCGGTGGACACGTGTTTTGAGAATTTAATGTCAATTGTATGCAAACTCAAACGTAGGAAGGAAACATCGAACCTTCAACCTGACAGAATGTAGTAAACGTTTTATTAAATTCGATACAAATCATAAACCCACCAACGAAATCGAACAAATAATCAAAAACTCGAGCTTCACGAACCTAGATTCATTAAAACCGTGACCCGAACATCCTAACCCTAATATGTGGCTATGTATTCCTTTGAATGGGCAGTTGGAAGAAAGCAGTGCAGGTCTTCATTCATCATGGGAAGCTTCGGAACCCAACAATTTGCATTACTGTGGACAACCTGAGGCCTTTCTTCAAGGCAATAATATTGCATTGGAAAATAGGTAAAATTTTATATTAATTATCATAAGTAAATAAATTAATTAAAAAAAAACCCTTTATTTATTTATTTTATATAAATTTAAATATCTAATTTAATTTATGGGTTATTTATAGTTACAATCCAGCAGAGGTTTCAAATCAAGAAAACGCCATAAACTCTGAGCCAGAAGGTAATGAGTTGCCTTCGCATTGGATGATGCTTTGATCTTATCTTATAAAAATATATTACATTAAACCATACTCTATTTCAACCCATTGTGACAATAATATATGTAGTAATTAATACATGAACCATATATATGATGCTCGATTTTCATCTAA

mRNA sequence

ATGGGAAGAGGTAAGGTGGAGCTGAAGAAGATAGAGAACAAAATAAACCGACAGGTGACCTTCACAAAACGAAGAAATGGCCTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTGGCACTCATCGTCTTCTCCACCGGTGGCAAGCTCTATGAATTCTCCAGCTCTTCCAGTATAGCCAAGACGTTGGAGAGGTATCAAAGACATAGCTATGGAGCTTTGGCAGCCTCCCATCATCTCAAGGACACCGAGAAATGGTACGAGGAGTATTTGAAGCTGAAAGAAGAAGTGGAAGGTCTGCAGCATTCACAGAGACGAATTCTTGGAGAAGAATTGGAAGATTTGGAGACGAAGGAATTGGACCAACTCGAAATTCAATTGGAAACGTCTCTGAAGCAAATCAGGTTCACTAAGAACCAAACGGTGTTTGATCAGTTATCTGAGCTAAAAAAGAAGGAAGAATTACTGCTGGAAACTAATCAAGCTTTGAGGAGGAAGTTGGAAGAAAGCAGTGCAGGTCTTCATTCATCATGGGAAGCTTCGGAACCCAACAATTTGCATTACTGTGGACAACCTGAGGCCTTTCTTCAAGGCAATAATATTGCATTGGAAAATAGTTACAATCCAGCAGAGGTTTCAAATCAAGAAAACGCCATAAACTCTGAGCCAGAAGGTAATGAGTTGCCTTCGCATTGGATGATGCTTTGATCTTATCTTATAAAAATATATTACATTAAACCATACTCTATTTCAACCCATTGTGACAATAATATATGTAGTAATTAATACATGAACCATATATATGATGCTCGATTTTCATCTAA

Coding sequence (CDS)

ATGGGAAGAGGTAAGGTGGAGCTGAAGAAGATAGAGAACAAAATAAACCGACAGGTGACCTTCACAAAACGAAGAAATGGCCTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTGGCACTCATCGTCTTCTCCACCGGTGGCAAGCTCTATGAATTCTCCAGCTCTTCCAGTATAGCCAAGACGTTGGAGAGGTATCAAAGACATAGCTATGGAGCTTTGGCAGCCTCCCATCATCTCAAGGACACCGAGAAATGGTACGAGGAGTATTTGAAGCTGAAAGAAGAAGTGGAAGGTCTGCAGCATTCACAGAGACGAATTCTTGGAGAAGAATTGGAAGATTTGGAGACGAAGGAATTGGACCAACTCGAAATTCAATTGGAAACGTCTCTGAAGCAAATCAGGTTCACTAAGAACCAAACGGTGTTTGATCAGTTATCTGAGCTAAAAAAGAAGGAAGAATTACTGCTGGAAACTAATCAAGCTTTGAGGAGGAAGTTGGAAGAAAGCAGTGCAGGTCTTCATTCATCATGGGAAGCTTCGGAACCCAACAATTTGCATTACTGTGGACAACCTGAGGCCTTTCTTCAAGGCAATAATATTGCATTGGAAAATAGTTACAATCCAGCAGAGGTTTCAAATCAAGAAAACGCCATAAACTCTGAGCCAGAAGGTAATGAGTTGCCTTCGCATTGGATGATGCTTTGA

Protein sequence

MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSSSSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGLHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML

Homology

[Close]

BLAST of CmoCh12G000870 vs. ExPASy Swiss-Prot
Match: Q39685 (MADS-box protein CMB1 OS=Dianthus caryophyllus OX=3570 GN=CMB1 PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.3e-59
Identity = 136/238 (57.14%), Postives = 170/238 (71.43%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALIVFS  GKLYEF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  SSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDLE 120
           S + KTLERYQR SYG+L  S   K+TE  Y+EYLKLK +V+ LQ S R +LGE+L +L 
Sbjct: 61  SCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELS 120

Query: 121 TKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGLHS 180
           TKEL+QLE QL+ SL+QIR  K Q + DQL++L+KKEE+L E+N+AL+ KLEES A    
Sbjct: 121 TKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEESCASFRP 180

Query: 181 SWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMM 239
           +W+  +P +  +  +P      NN  L+  YN A   +Q NA  S    +     WM+
Sbjct: 181 NWDVRQPGDGFF--EPLPLPCNNN--LQIGYNEA-TQDQMNATTSAQNVHGFAQGWML 233

[Close]

BLAST of CmoCh12G000870 vs. ExPASy Swiss-Prot
Match: Q8LLR2 (Agamous-like MADS-box protein MADS2 OS=Vitis vinifera OX=29760 GN=MADS2 PE=2 SV=2)

HSP 1 Score: 231.1 bits (588), Expect = 1.3e-59
Identity = 142/245 (57.96%), Postives = 174/245 (71.02%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALI+FST GKLYEF SS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSS 60

Query: 61  SSIAKTLERYQRHSYGALAASHHLKDTEK-WYEEYLKLKEEVEGLQHSQRRILGEELEDL 120
           SS+ KTLERYQ+ SYGA+  S   K+ E+  Y EYLKLK + E LQ +QR +LGE+L  L
Sbjct: 61  SSMLKTLERYQKCSYGAVEVSRPSKELEQSSYREYLKLKSKFESLQRTQRNLLGEDLGPL 120

Query: 121 ETKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGLH 180
            TKEL+QLE QLETSLKQ+R TK Q + DQLS+L+ KE++L+E+N+AL RKL+E S   H
Sbjct: 121 NTKELEQLERQLETSLKQVRSTKTQFMLDQLSDLQNKEQVLVESNKALTRKLDEISVKNH 180

Query: 181 --SSWEASEPNNL--HYCGQPEAFLQ--GNNIALENSYNPAEVSNQENAINSEPEGNELP 239
              SWE+ E +    H   Q + F Q    N  L+  YNPA  S      N++     +P
Sbjct: 181 LQLSWESGEQSMPYGHQQAQSQGFFQPLECNPTLQIGYNPAGSSQLSAPSNAQNVNGFIP 240

[Close]

BLAST of CmoCh12G000870 vs. ExPASy Swiss-Prot
Match: Q7Y040 (MADS-box protein EJ2 OS=Solanum lycopersicum OX=4081 GN=EJ2 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 4.4e-55
Identity = 133/247 (53.85%), Postives = 168/247 (68.02%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALI+FS  GKLYEF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDLE 120
           SS+ KT+E+YQR SY  L A+  + DT+  Y EYL+LK  VE LQ SQR  LGE+L  L 
Sbjct: 61  SSMVKTIEKYQRCSYATLEANQSVTDTQNNYHEYLRLKARVELLQRSQRNFLGEDLGTLS 120

Query: 121 TKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAG--L 180
           +K+L+QLE QLE+SLKQIR  K Q + DQL++L++KE++L E+N+ LRRKLEES AG  L
Sbjct: 121 SKDLEQLENQLESSLKQIRSRKTQFMLDQLADLQQKEQMLAESNRLLRRKLEESVAGFPL 180

Query: 181 HSSWEASEPNNLHY----CGQPEAFLQGNNIALEN---SYNPAEVSNQENAINSEPEGNE 239
              WE    + L +        E F Q   +   +    YNP   +++ NA  +    N 
Sbjct: 181 RLCWEDGGDHQLMHQQNRLPNTEGFFQPLGLHSSSPHFGYNPVN-TDEVNAAATAHNMNG 240

[Close]

BLAST of CmoCh12G000870 vs. ExPASy Swiss-Prot
Match: P29383 (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 SV=2)

HSP 1 Score: 215.7 bits (548), Expect = 5.7e-55
Identity = 134/261 (51.34%), Postives = 175/261 (67.05%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEF-SS 60
           MGRGKVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE+AL++FS  GKLYEF SS
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  SSSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDL 120
            S +A+T+++Y++HSY  +  +   KD +  Y++YLKLK  VE LQHSQR +LGEEL ++
Sbjct: 61  PSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEM 120

Query: 121 ETKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGLH 180
           +  EL+ LE Q++ SL+QIR TK +++ DQLS+LK KEE+LLETN+ LRRKLE+S A L 
Sbjct: 121 DVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALT 180

Query: 181 SSW---EASEPNNLH---------YCGQPEAFLQG------NNIALENS----YNPAEVS 239
            S+    A+E    H         Y   P     G       N+AL+ S    +NPA  +
Sbjct: 181 QSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANAT 240

[Close]

BLAST of CmoCh12G000870 vs. ExPASy Swiss-Prot
Match: K4BND8 (MADS-box protein 04g005320 OS=Solanum lycopersicum OX=4081 GN=Solyc04g005320 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.7e-55
Identity = 129/226 (57.08%), Postives = 162/226 (71.68%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRGKVELK+IENKINRQVTF KRRNGLLKKAYELSILC+AEVALI+FS  GKLYEF S+
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSILCEAEVALIIFSNRGKLYEFCST 60

Query: 61  SSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDLE 120
           SS++ TLERY R SYG L      KD++  Y+EY+KLK  VE LQ SQR ILGE+L  L 
Sbjct: 61  SSMSDTLERYHRCSYGDLETGQSSKDSQNNYQEYMKLKARVEVLQQSQRHILGEDLGQLN 120

Query: 121 TKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGLHS 180
           TK+L+QLE QL++SL+ IR  + Q + DQLS+L++KE+ LLE N++L+ KLEE+S    +
Sbjct: 121 TKDLEQLERQLDSSLRLIRSRRTQNMLDQLSDLQQKEQSLLEINRSLKTKLEENSV---A 180

Query: 181 SWEASEPNNLHYCGQP---EAF---LQGNNIALENSYNPAEVSNQE 221
            W  +   N+ +  QP   E F   LQ N   + N YN A + + E
Sbjct: 181 HWHITGEQNVQFRQQPAQSEGFFQPLQCNTNIVPNRYNVAPLDSIE 223

[Close]

BLAST of CmoCh12G000870 vs. ExPASy TrEMBL
Match: A0A6J1GJJ3 (truncated transcription factor CAULIFLOWER A OS=Cucurbita moschata OX=3662 GN=LOC111454432 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.2e-125
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS
Sbjct: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60

Query: 61  SSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDLE 120
           SSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDLE
Sbjct: 61  SSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDLE 120

Query: 121 TKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGLHS 180
           TKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGLHS
Sbjct: 121 TKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGLHS 180

Query: 181 SWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML 240
           SWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML
Sbjct: 181 SWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML 239

[Close]

BLAST of CmoCh12G000870 vs. ExPASy TrEMBL
Match: A0A6J1KSQ8 (truncated transcription factor CAULIFLOWER A OS=Cucurbita maxima OX=3661 GN=LOC111496099 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.5e-119
Identity = 229/239 (95.82%), Postives = 234/239 (97.91%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS
Sbjct: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60

Query: 61  SSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDLE 120
           SSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLK EVEGLQHSQR+ILGEELEDLE
Sbjct: 61  SSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKAEVEGLQHSQRQILGEELEDLE 120

Query: 121 TKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGLHS 180
           TKELDQLEIQLE SLKQIRFTKNQ+V+++LSELKKKEELLLETNQALRRKLEESSA LHS
Sbjct: 121 TKELDQLEIQLEMSLKQIRFTKNQSVYEKLSELKKKEELLLETNQALRRKLEESSAALHS 180

Query: 181 SWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML 240
           SWEASEPNNLHYCGQPEAFLQ NNIALENSYNPAEVSNQENAINSEPEGNELP HWMML
Sbjct: 181 SWEASEPNNLHYCGQPEAFLQSNNIALENSYNPAEVSNQENAINSEPEGNELPLHWMML 239

[Close]

BLAST of CmoCh12G000870 vs. ExPASy TrEMBL
Match: A0A6J1BUY9 (truncated transcription factor CAULIFLOWER A OS=Momordica charantia OX=3673 GN=LOC111004957 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.8e-97
Identity = 198/243 (81.48%), Postives = 215/243 (88.48%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALI+FST GKLYEFSSS
Sbjct: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60

Query: 61  SSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDLE 120
           SSIAKTLERYQRHSYGAL  SHH KDT++WY+EYLKLK EVE LQHSQRR LGEEL+DLE
Sbjct: 61  SSIAKTLERYQRHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLE 120

Query: 121 TKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGLHS 180
           TKELDQLEIQLE SLKQIR  K+QT+FDQLS+L+KKEELLLETNQALRRKLEES+A LH 
Sbjct: 121 TKELDQLEIQLEMSLKQIRSAKSQTMFDQLSDLQKKEELLLETNQALRRKLEESNAALHW 180

Query: 181 SWEASEPNNLHYCGQPEAFLQGNNI-ALENSYNPAEVSNQENAINSEPE---GNELPSHW 240
           +WEAS+ ++L Y  Q E FLQ NNI ALENSY+PAEVSNQEN INS PE    +  PSHW
Sbjct: 181 TWEASDQHSLQYSRQAEGFLQRNNIVALENSYHPAEVSNQENGINSGPEPEAASGFPSHW 240

[Close]

BLAST of CmoCh12G000870 vs. ExPASy TrEMBL
Match: A0A1S4DVG4 (MADS-box protein CMB1 OS=Cucumis melo OX=3656 GN=LOC103488456 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.8e-83
Identity = 174/212 (82.08%), Postives = 190/212 (89.62%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFS  GKLYEFSSS
Sbjct: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSARGKLYEFSSS 60

Query: 61  SSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDLE 120
           SSI KTLERY+RHSYGAL ASH  KDTE+WY+EYLKLK EVE LQ+SQRR LGEEL+DLE
Sbjct: 61  SSIGKTLERYERHSYGALEASHPPKDTERWYQEYLKLKAEVEALQYSQRRFLGEELDDLE 120

Query: 121 TKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGL-H 180
           +KELDQLEIQLE SLKQIR TK QT+FDQLS+L+KKE+ LLETNQALR+KLEESS  + H
Sbjct: 121 SKELDQLEIQLEMSLKQIRSTKRQTMFDQLSDLQKKEDRLLETNQALRKKLEESSGAIHH 180

Query: 181 SSWEASEPNNLHYCGQPEAFLQGNN--IALEN 210
           +SW++SE NNL YC QPEAFLQ NN  IALEN
Sbjct: 181 TSWDSSEANNLQYCRQPEAFLQLNNNIIALEN 212

[Close]

BLAST of CmoCh12G000870 vs. ExPASy TrEMBL
Match: A0A0A0KIR6 (K-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G367080 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 4.1e-64
Identity = 137/180 (76.11%), Postives = 156/180 (86.67%), Query Frame = 0


Query: 63  IAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDLETK 122
           IAKTLERY+RHSYGAL AS   KDTE+WY+EYLKLK EVE LQ+SQRR LGEEL+DLETK
Sbjct: 10  IAKTLERYERHSYGALEASLPPKDTERWYQEYLKLKAEVEALQYSQRRFLGEELDDLETK 69

Query: 123 ELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGL-HSS 182
           ELDQLEIQLE SLKQIR TK QT+FDQLS+L+KKE+ LLETNQALR+KLEESSA + H+S
Sbjct: 70  ELDQLEIQLEMSLKQIRSTKRQTMFDQLSDLQKKEDKLLETNQALRKKLEESSAAIHHTS 129

Query: 183 WEASEPNNLHYCGQPEAFLQGNN--IALENSYNPAEVSNQENAINSEPEGNELPSHWMML 240
           W++SEPNNL YC QPEAFLQ NN  IALENSYNP EV+N+EN +NS  +GN L SHWM+L
Sbjct: 130 WDSSEPNNLQYCRQPEAFLQLNNNIIALENSYNPTEVTNEENVVNSGADGNGLSSHWMLL 189

[Close]

BLAST of CmoCh12G000870 vs. TAIR 10
Match: AT2G03710.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 216.5 bits (550), Expect = 2.4e-56
Identity = 130/257 (50.58%), Postives = 171/257 (66.54%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEF-SS 60
           MGRGKVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE+AL++FS  GKLYEF SS
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  SSSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDL 120
            S +A+T+++Y++HSY  +  +   KD +  Y++YLKLK  VE LQHSQR +LGEEL ++
Sbjct: 61  PSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEM 120

Query: 121 ETKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGLH 180
           +  EL+ LE Q++ SL+QIR TK +++ DQLS+LK KEE+LLETN+ LRRKLE+S A L 
Sbjct: 121 DVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALT 180

Query: 181 SSW---EASEPNNLH---------YCGQPEAFLQG------NNIALENSYNPAEVSNQEN 239
            S+    A+E    H         Y   P     G       N+AL+ S+     +N  N
Sbjct: 181 QSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSHYNHNPANATN 240

[Close]

BLAST of CmoCh12G000870 vs. TAIR 10
Match: AT2G03710.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 215.7 bits (548), Expect = 4.1e-56
Identity = 134/261 (51.34%), Postives = 175/261 (67.05%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEF-SS 60
           MGRGKVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE+AL++FS  GKLYEF SS
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  SSSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDL 120
            S +A+T+++Y++HSY  +  +   KD +  Y++YLKLK  VE LQHSQR +LGEEL ++
Sbjct: 61  PSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEM 120

Query: 121 ETKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGLH 180
           +  EL+ LE Q++ SL+QIR TK +++ DQLS+LK KEE+LLETN+ LRRKLE+S A L 
Sbjct: 121 DVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALT 180

Query: 181 SSW---EASEPNNLH---------YCGQPEAFLQG------NNIALENS----YNPAEVS 239
            S+    A+E    H         Y   P     G       N+AL+ S    +NPA  +
Sbjct: 181 QSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANAT 240

[Close]

BLAST of CmoCh12G000870 vs. TAIR 10
Match: AT3G02310.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-54
Identity = 123/213 (57.75%), Postives = 153/213 (71.83%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEV+LIVFS  GKLYEF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query: 61  SSIAKTLERYQRHSYGALAASHH-LKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDL 120
           S++ KTLERYQ+ SYG++  ++   K+ E  Y EYLKLK   E LQ  QR +LGE+L  L
Sbjct: 61  SNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 121 ETKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGLH 180
            +KEL+QLE QL+ SLKQ+R  K Q + DQLS+L+ KE +LL+ N+AL  KLE+     H
Sbjct: 121 NSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRH 180

Query: 181 ----SSWEASEPNNLHYCGQPEAFLQGNNIALE 209
                 WE  +  N+ Y G P+A  QG   +LE
Sbjct: 181 HHIGGGWEGGDQQNIAY-GHPQAHSQGLYQSLE 212

[Close]

BLAST of CmoCh12G000870 vs. TAIR 10
Match: AT2G03710.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.9e-53
Identity = 109/172 (63.37%), Postives = 141/172 (81.98%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEF-SS 60
           MGRGKVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE+AL++FS  GKLYEF SS
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  SSSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDL 120
            S +A+T+++Y++HSY  +  +   KD +  Y++YLKLK  VE LQHSQR +LGEEL ++
Sbjct: 61  PSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEM 120

Query: 121 ETKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKL 172
           +  EL+ LE Q++ SL+QIR TK +++ DQLS+LK KEE+LLETN+ LRRK+
Sbjct: 121 DVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKV 172

[Close]

BLAST of CmoCh12G000870 vs. TAIR 10
Match: AT5G15800.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 206.1 bits (523), Expect = 3.2e-53
Identity = 130/251 (51.79%), Postives = 163/251 (64.94%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALI+FS  GKLYEF SS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSIAKTLERYQRHSYGALAASHH-LKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDL 120
           S++ KTL+RYQ+ SYG++  ++   K+ E  Y EYLKLK   E LQ  QR +LGE+L  L
Sbjct: 61  SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 121 ETKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEE------ 180
            +KEL+QLE QL+ SLKQ+R  K Q + DQLS+L+ KE++LLETN+AL  KL++      
Sbjct: 121 NSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRS 180

Query: 181 SSAGLHSSWEASEPN--NLHYCGQPEAFLQ--GNNIALENSYNPAEVSNQENAIN--SEP 239
              G    WE  E N    H+  Q +   Q    N  L+  Y+    S Q  A       
Sbjct: 181 HHMGGGGGWEGGEQNVTYAHHQAQSQGLYQPLECNPTLQMGYDNPVCSEQITATTQAQAQ 240

The following BLAST results are available for this feature:

BLAST of CmoCh12G000870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39685	1.3e-59	57.14	MADS-box protein CMB1 OS=Dianthus caryophyllus OX=3570 GN=CMB1 PE=2 SV=1	[more]
Q8LLR2	1.3e-59	57.96	Agamous-like MADS-box protein MADS2 OS=Vitis vinifera OX=29760 GN=MADS2 PE=2 SV=...	[more]
Q7Y040	4.4e-55	53.85	MADS-box protein EJ2 OS=Solanum lycopersicum OX=4081 GN=EJ2 PE=1 SV=1	[more]
P29383	5.7e-55	51.34	Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 ...	[more]
K4BND8	5.7e-55	57.08	MADS-box protein 04g005320 OS=Solanum lycopersicum OX=4081 GN=Solyc04g005320 PE=...	[more]

BLAST of CmoCh12G000870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJJ3	3.2e-125	100.00	truncated transcription factor CAULIFLOWER A OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KSQ8	1.5e-119	95.82	truncated transcription factor CAULIFLOWER A OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1BUY9	2.8e-97	81.48	truncated transcription factor CAULIFLOWER A OS=Momordica charantia OX=3673 GN=L...	[more]
A0A1S4DVG4	1.8e-83	82.08	MADS-box protein CMB1 OS=Cucumis melo OX=3656 GN=LOC103488456 PE=4 SV=1	[more]
A0A0A0KIR6	4.1e-64	76.11	K-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G367080 PE=4 ...	[more]

BLAST of CmoCh12G000870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03710.2	2.4e-56	50.58	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.1	4.1e-56	51.34	K-box region and MADS-box transcription factor family protein	[more]
AT3G02310.1	1.3e-54	57.75	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.3	1.9e-53	63.37	K-box region and MADS-box transcription factor family protein	[more]
AT5G15800.1	3.2e-53	51.79	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 124..144
None	No IPR available	COILS	Coil	Coil	coord: 150..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..239
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..216
None	No IPR available	PANTHER	PTHR48019:SF25	SUBFAMILY NOT NAMED	coord: 1..216
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 67.09 coord: 38..59 score: 65.37 coord: 23..38 score: 81.18
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 1.0E-40 score: 151.3
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 1.6E-26 score: 91.6
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 33.206833
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 85..171 e-value: 1.7E-24 score: 85.8
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 87..177 score: 15.074533
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..83 e-value: 6.5E-28 score: 98.4
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..83
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 2..78 e-value: 5.36015E-44 score: 140.765

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G000870.1	CmoCh12G000870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding