CmoCh12G000780 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G000780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like
Location	Cmo_Chr12: 426069 .. 427721 (-)
RNA-Seq Expression	CmoCh12G000780
Synteny	CmoCh12G000780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGGAAGGAAAAAGAAAGAAAAAGAAGGGGAAAAAAAAAGGTGAATAGAGACACACAGGCACCGCCTCCACATTCTTTCCCCACTAGAAATCTCTATTTCCCTTCCCTCTCTCTCTCTCTCTCTCTCTCTGCTTCGCCACAGCTCTCTGTTCTGTTCTCTCTCGGAGTTCGTGTTCATTCATGGCGGTTCTCTTGTTCTTTTCCTTGATGTTCATGGCTTTCACCTCTCATTCAGGTAACCCTTTTGTTCTTTCAAGCTTTTCTGCAACTTCAATGGAATTTTACACATGAATCGCTTAAACCCCTTGAAGATTTTCATCTGGAATCGAAAATTTTCACTAACCCTTGGCTTAAATCTTCATAAGGTGCTACGTATTGTGTTTGTAAAGATGGATTAAGCGACCAAGCCCTTCAAAAGTCACTGGATTATGCTTGTGGAGCTGGAGCCGATTGTTCTCCAATTCTTCAAAATGGGGTTTGTTTTCAGCCTAATACTGTCAAGGATCATTGTAGCTATGCTGTTAATAGCTATTTTCAGCGCAAGGGTCAAGTCCAAGGGAGCTGTGATTTTTCAGGCACTGCCATGGCTAGCCAGTCTCCTCCTGGTATCACTGATTCATATCATTTTTCACTCATGTTCTTCATCAATGGCCTTGTTTTTGTTGCTTAATCTTTGTTGGGTTTGTTTTTCTTGTGTTTTTTGAACAGCTGGAGCTTCTGGGTGTGTTTATCCTTCGAGTCCCAGGTACCATCTTCATGTTCTTCATAGTTTTTCAAGAATTGTTCATATCTCTAATGGAAAGTGGCTGATACTCATGCATTTTCATTTGTTTCTTTGCTCAAAGTTACCTTTTCCTCAACTTTTTGAACTGATTTTAGTGAGAATCTGCTGCTTGATAGCATAAAAGAAGGCGTTCATTTAAGAATCCAATTCCCTTCTGGCTTTGTTCATAGCTGTTCATCTTTTTCACCTTAGAAACTTACCTAATCCTGTTTAGATAAAAGTTATCCTTCACTTTTACTGTCTCTTTCTATGCTATCTATATGCTGTTCTTCTATTTTTTACATCCAATGACAAAATTTACCATTTCAAAGCTTCCATGAGTGACAATGACATGAACAATTCAACACCCCTTTCCCTCTTCTCTGTTTCAGCAACGCAGGAACCCCGTCGACCACCATCCCGGGCACGACGCCAGGAACAATCACAAACCCATCAACAACACCACCCTCAACCATGACCCCAGGCATCACACCACCCTCAACCATGACCCCAGGTATCACCCCGCCCTCAGTGTTCGGGGGCGGGATAAGCCCGACAGGCGGGGTCGGGCTCGGTGGTAGCGGGAGTAGCATGGATGGAAGCGCTGCCATTGCAGCAGCAGCCTGTAACATGTTGTTGTTGTTCATAGCCATTGTGACATCTTTGTTGTAATGTTGTTTGATGTGGGTGGAGAATATGGTTCCTTATTTGTGGAATGGGAACCTGATCCTCTTGGATGTTTTTTTTCACCTTTTGTGTATCTATTAGAGGCTGTATTTTGCTTAATTTAATGGGGGGTTTTTGCAACCACTAATCAATAATTATGCTCTTTTTTCATTGTTAATTTGTTTTATAATAAAGTTTATGGGATGTGTTACTATTGTTAAA

mRNA sequence

AAATGGAAGGAAAAAGAAAGAAAAAGAAGGGGAAAAAAAAAGGTGAATAGAGACACACAGGCACCGCCTCCACATTCTTTCCCCACTAGAAATCTCTATTTCCCTTCCCTCTCTCTCTCTCTCTCTCTCTCTGCTTCGCCACAGCTCTCTGTTCTGTTCTCTCTCGGAGTTCGTGTTCATTCATGGCGGTTCTCTTGTTCTTTTCCTTGATGTTCATGGCTTTCACCTCTCATTCAGGTGCTACGTATTGTGTTTGTAAAGATGGATTAAGCGACCAAGCCCTTCAAAAGTCACTGGATTATGCTTGTGGAGCTGGAGCCGATTGTTCTCCAATTCTTCAAAATGGGGTTTGTTTTCAGCCTAATACTGTCAAGGATCATTGTAGCTATGCTGTTAATAGCTATTTTCAGCGCAAGGGTCAAGTCCAAGGGAGCTGTGATTTTTCAGGCACTGCCATGGCTAGCCAGTCTCCTCCTGCTGGAGCTTCTGGGTGTGTTTATCCTTCGAGTCCCAGCAACGCAGGAACCCCGTCGACCACCATCCCGGGCACGACGCCAGGAACAATCACAAACCCATCAACAACACCACCCTCAACCATGACCCCAGGCATCACACCACCCTCAACCATGACCCCAGGTATCACCCCGCCCTCAGTGTTCGGGGGCGGGATAAGCCCGACAGGCGGGGTCGGGCTCGGTGGTAGCGGGAGTAGCATGGATGGAAGCGCTGCCATTGCAGCAGCAGCCTGTAACATGTTGTTGTTGTTCATAGCCATTGTGACATCTTTGTTGTAATGTTGTTTGATGTGGGTGGAGAATATGGTTCCTTATTTGTGGAATGGGAACCTGATCCTCTTGGATGTTTTTTTTCACCTTTTGTGTATCTATTAGAGGCTGTATTTTGCTTAATTTAATGGGGGGTTTTTGCAACCACTAATCAATAATTATGCTCTTTTTTCATTGTTAATTTGTTTTATAATAAAGTTTATGGGATGTGTTACTATTGTTAAA

Coding sequence (CDS)

ATGGCGGTTCTCTTGTTCTTTTCCTTGATGTTCATGGCTTTCACCTCTCATTCAGGTGCTACGTATTGTGTTTGTAAAGATGGATTAAGCGACCAAGCCCTTCAAAAGTCACTGGATTATGCTTGTGGAGCTGGAGCCGATTGTTCTCCAATTCTTCAAAATGGGGTTTGTTTTCAGCCTAATACTGTCAAGGATCATTGTAGCTATGCTGTTAATAGCTATTTTCAGCGCAAGGGTCAAGTCCAAGGGAGCTGTGATTTTTCAGGCACTGCCATGGCTAGCCAGTCTCCTCCTGCTGGAGCTTCTGGGTGTGTTTATCCTTCGAGTCCCAGCAACGCAGGAACCCCGTCGACCACCATCCCGGGCACGACGCCAGGAACAATCACAAACCCATCAACAACACCACCCTCAACCATGACCCCAGGCATCACACCACCCTCAACCATGACCCCAGGTATCACCCCGCCCTCAGTGTTCGGGGGCGGGATAAGCCCGACAGGCGGGGTCGGGCTCGGTGGTAGCGGGAGTAGCATGGATGGAAGCGCTGCCATTGCAGCAGCAGCCTGTAACATGTTGTTGTTGTTCATAGCCATTGTGACATCTTTGTTGTAA

Protein sequence

MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQPNTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTIPGTTPGTITNPSTTPPSTMTPGITPPSTMTPGITPPSVFGGGISPTGGVGLGGSGSSMDGSAAIAAAACNMLLLFIAIVTSLL

Homology

[Close]

BLAST of CmoCh12G000780 vs. ExPASy Swiss-Prot
Match: Q9FZ86 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana OX=3702 GN=PDCB3 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.8e-33
Identity = 88/163 (53.99%), Postives = 108/163 (66.26%), Query Frame = 0


Query: 1   MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MAV +   ++ +A   HS  T+CVCK+GLS+  LQK+LDYACGAGADC PI Q G CF P
Sbjct: 1   MAVFVLV-MILLAMAGHSSGTWCVCKEGLSEAMLQKTLDYACGAGADCGPIHQTGPCFNP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAG--TPST 120
           NTVK HCSYAVNS+FQ+KGQ  G+CDF+GTA  S S P+  + C +P+S S +G  TP T
Sbjct: 61  NTVKSHCSYAVNSFFQKKGQSLGTCDFAGTATFSASDPSYTT-CPFPASASGSGTTTPVT 120

Query: 121 TIPGTTPGTITNPSTTPPSTMTP----GITPPSTMTPGITPPS 158
           T P T   T TN   T P T+TP    G+  PS + P  T PS
Sbjct: 121 TTPSTRVPTTTN---TRPYTITPSTGGGLGIPSGINPDYTDPS 158

[Close]

BLAST of CmoCh12G000780 vs. ExPASy Swiss-Prot
Match: Q9FNQ2 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-26
Identity = 83/197 (42.13%), Postives = 113/197 (57.36%), Query Frame = 0


Query: 5   LFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQPNTVK 64
           L  SL+ ++   HS A++CVCK GLSD  LQ +LDYACG GADC+P      CF P+ V+
Sbjct: 4   LVLSLLLLSLAGHSSASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVR 63

Query: 65  DHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTIPGTT 124
            HC+YAVNS+FQ+KGQ  GSC+F GTA  + S P+  +GC +P+S S +   +T  PGT 
Sbjct: 64  SHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPS-YTGCAFPTSASGSSGSTTVTPGT- 123

Query: 125 PGTITNPSTTPPSTMTPGITPPSTMTPGITPPSVFGGGISPTGGVGLGGSGSSMDGSAAI 184
               TNP  +P +T  PG    S  + G     VFGG  S  G  G G +      S+A 
Sbjct: 124 ----TNPKGSPTTTTLPGSGTNSPYS-GNPTNGVFGGN-STGGTTGTGINPDYTTDSSAF 183

Query: 185 AAAACNMLLLFIAIVTS 202
           A    + L + + ++ S
Sbjct: 184 ALKNSSKLFICLLLIAS 192

[Close]

BLAST of CmoCh12G000780 vs. ExPASy Swiss-Prot
Match: Q93V72 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4 OS=Arabidopsis thaliana OX=3702 GN=PDCB4 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-25
Identity = 82/187 (43.85%), Postives = 111/187 (59.36%), Query Frame = 0


Query: 1   MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           M+VLL   L+   FT +S A YC+CK+G ++Q LQK++DYACG GADC+ I   G C+QP
Sbjct: 1   MSVLLPLCLIISMFT-YSNAAYCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTI 120
           NTVK+HC  AVNSY+Q+K     +CDF+G A  S +PP+ AS C+  SS S  GTP+T  
Sbjct: 61  NTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPPSTASNCLTGSSSS--GTPTTGT 120

Query: 121 PGTTPGTITNPSTTPPSTMTPGITPPSTMTPGI------TPPSVFGGGISPTGGVGLGGS 180
           P T   T   P+T  P+T TP    P++ TP        TP +    G+  + G+    S
Sbjct: 121 PTTGTPTSGTPTTGTPTTGTPTTGTPTSGTPTSGFPNTGTPNTGTNTGMPNSNGMPTSSS 180

Query: 181 GSSMDGS 182
            S   G+
Sbjct: 181 SSVFPGT 183

[Close]

BLAST of CmoCh12G000780 vs. ExPASy Swiss-Prot
Match: Q9SD84 (PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.8e-24
Identity = 84/203 (41.38%), Postives = 120/203 (59.11%), Query Frame = 0


Query: 1   MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MA L+ + L+ +    H+ A++CVCK GLSD  LQK+LDYACG GADC+P    G CF P
Sbjct: 1   MAPLVLY-LLTLLMAGHTSASWCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPS-NAGTPSTT 120
           + V+ HC+YAVNS+FQ+KGQ   SC+F+GTA  + + P+  +GC +PSS S ++G+ STT
Sbjct: 61  DNVRAHCNYAVNSFFQKKGQASESCNFTGTATLTTTDPS-YTGCAFPSSASGSSGSGSTT 120

Query: 121 IPGTTPGTITNPSTTPPSTMTPGITPPSTMTPGITPPSVFGGGISPTGGVGLGGSGSSMD 180
           +   TPG   +P  +   T  PG   P + TP      + GG I+   G GL    S+  
Sbjct: 121 V---TPGK-NSPKGSNSITTFPGGNSPYSGTPS---TGLLGGNITDATGTGLNPDYSTES 180

Query: 181 GSAAIAAAACNMLLLFIAIVTSL 203
              A+  +   +L  F ++V  L
Sbjct: 181 SGFALYYSNNLLLTGFCSLVMML 194

[Close]

BLAST of CmoCh12G000780 vs. ExPASy Swiss-Prot
Match: Q9FZD0 (Carbohydrate-binding X8 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=At1g26450 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-22
Identity = 81/183 (44.26%), Postives = 103/183 (56.28%), Query Frame = 0


Query: 1   MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MAVLL   L+   FT +S A  CVCKD  ++  LQK +D+ACG GADC+ I   G C+QP
Sbjct: 1   MAVLLPLFLLSFMFT-YSNAAVCVCKDA-NELDLQKVIDFACGGGADCAQIQTTGACYQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTI 120
           NT+K+HC  AVNSY+Q+K     +CDF+G A+ S SPP+  S C+  SS S+ GTP+   
Sbjct: 61  NTLKNHCDVAVNSYYQKKASTGATCDFNGAAVISTSPPSTTSSCL--SSSSSNGTPTAGY 120

Query: 121 PGTTPGTITNPSTTPPST--MTPGITPPSTMTPGIT---PPSVFGGGISPTGGVGLGGSG 179
           P T   T  +P TT PST   T    P +      T   P S   G  S T G   GG  
Sbjct: 121 PSTGNSTTASPGTTNPSTGNSTNSTLPTNDKPTSSTITFPDSTTMGPSSSTSGDPNGGEE 179

[Close]

BLAST of CmoCh12G000780 vs. ExPASy TrEMBL
Match: A0A6J1GIL3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucurbita moschata OX=3662 GN=LOC111454228 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.5e-102
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP
Sbjct: 1   MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTI 120
           NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTI
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTI 120

Query: 121 PGTTPGTITNPSTTPPSTMTPGITPPSTMTPGITPPSVFGGGISPTGGVGLGGSGSSMDG 180
           PGTTPGTITNPSTTPPSTMTPGITPPSTMTPGITPPSVFGGGISPTGGVGLGGSGSSMDG
Sbjct: 121 PGTTPGTITNPSTTPPSTMTPGITPPSTMTPGITPPSVFGGGISPTGGVGLGGSGSSMDG 180

Query: 181 SAAIAAAACNMLLLFIAIVTSLL 204
           SAAIAAAACNMLLLFIAIVTSLL
Sbjct: 181 SAAIAAAACNMLLLFIAIVTSLL 203

[Close]

BLAST of CmoCh12G000780 vs. ExPASy TrEMBL
Match: A0A6J1KUG1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucurbita maxima OX=3661 GN=LOC111496509 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.0e-100
Identity = 200/203 (98.52%), Postives = 201/203 (99.01%), Query Frame = 0


Query: 1   MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MAVLLFFSLMFMAFTSHS A YCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP
Sbjct: 1   MAVLLFFSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTI 120
           NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTT+
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTV 120

Query: 121 PGTTPGTITNPSTTPPSTMTPGITPPSTMTPGITPPSVFGGGISPTGGVGLGGSGSSMDG 180
           PGTTPGTITNPSTTPPSTMTPGITPPSTMTPGITPPSVFGGGISPTGGVGLGGSGSSMDG
Sbjct: 121 PGTTPGTITNPSTTPPSTMTPGITPPSTMTPGITPPSVFGGGISPTGGVGLGGSGSSMDG 180

Query: 181 SAAIAAAACNMLLLFIAIVTSLL 204
           SAAIAAAACNMLLLFIAIVTSLL
Sbjct: 181 SAAIAAAACNMLLLFIAIVTSLL 203

[Close]

BLAST of CmoCh12G000780 vs. ExPASy TrEMBL
Match: A0A5A7V8S9 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00670 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 4.2e-70
Identity = 157/201 (78.11%), Postives = 165/201 (82.09%), Query Frame = 0


Query: 1   MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MAVLL   L+F+AFTSHS ATYC+CKDGLSDQALQKSLDYACGAGADCS ILQNG CFQP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCSQILQNGPCFQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTI 120
           NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAM SQSPPA ASGCVYPSSPS  GTP+TT 
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPSFTGTPTTTT 120

Query: 121 PGTTPGTITNPSTTPPSTMTPGITPPSTMTPGITPPSVFGGGISPTGGVGLGGSGSSMDG 180
           P TTP T T P TTP +T  P  TPPST TPG T PSVFGGGISPTGGVGLG  G++MDG
Sbjct: 121 PSTTPST-TIPGTTPGTTTNPSTTPPSTTTPGTTSPSVFGGGISPTGGVGLG--GNTMDG 180

Query: 181 SAAIAA-AACNMLLLFIAIVT 201
           SAA    AA + L  F A VT
Sbjct: 181 SAAAGLNAAASNLFFFTATVT 198

[Close]

BLAST of CmoCh12G000780 vs. ExPASy TrEMBL
Match: A0A1S3BDH0 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucumis melo OX=3656 GN=LOC103488471 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 4.2e-70
Identity = 157/201 (78.11%), Postives = 165/201 (82.09%), Query Frame = 0


Query: 1   MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MAVLL   L+F+AFTSHS ATYC+CKDGLSDQALQKSLDYACGAGADCS ILQNG CFQP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCSQILQNGPCFQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTI 120
           NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAM SQSPPA ASGCVYPSSPS  GTP+TT 
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPSFTGTPTTTT 120

Query: 121 PGTTPGTITNPSTTPPSTMTPGITPPSTMTPGITPPSVFGGGISPTGGVGLGGSGSSMDG 180
           P TTP T T P TTP +T  P  TPPST TPG T PSVFGGGISPTGGVGLG  G++MDG
Sbjct: 121 PSTTPST-TIPGTTPGTTTNPSTTPPSTTTPGTTSPSVFGGGISPTGGVGLG--GNTMDG 180

Query: 181 SAAIAA-AACNMLLLFIAIVT 201
           SAA    AA + L  F A VT
Sbjct: 181 SAAAGLNAAASNLFFFTATVT 198

[Close]

BLAST of CmoCh12G000780 vs. ExPASy TrEMBL
Match: A0A0A0KDN8 (X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G366460 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 8.0e-69
Identity = 154/201 (76.62%), Postives = 164/201 (81.59%), Query Frame = 0


Query: 1   MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MAVLL   L+F+AFTSHS ATYC+CKDGLSDQALQKSLDYACGAGADC+PILQNG C+QP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTPILQNGPCYQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTI 120
           NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTA  SQSPPA ASGCVYPSSPS  GTP++T 
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTASPSQSPPAVASGCVYPSSPSFTGTPTSTT 120

Query: 121 PGTTPGTITNPSTTPPSTMTPGITPPSTMTPGITPPSVFGGGISPTGGVGLGGSGSSMDG 180
           P TTP T T P TTP +T  P  TPPST TPG T PSVFG GISPTGGVGLG  G+SMDG
Sbjct: 121 PSTTPST-TIPGTTPGTTTNPSTTPPSTTTPGTTSPSVFGNGISPTGGVGLG--GNSMDG 180

Query: 181 SAAIAA-AACNMLLLFIAIVT 201
           SAA    AA + L  F A VT
Sbjct: 181 SAAAGLNAAASNLFFFTATVT 198

[Close]

BLAST of CmoCh12G000780 vs. TAIR 10
Match: AT1G18650.1 (plasmodesmata callose-binding protein 3 )

HSP 1 Score: 142.1 bits (357), Expect = 4.8e-34
Identity = 88/163 (53.99%), Postives = 108/163 (66.26%), Query Frame = 0


Query: 1   MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MAV +   ++ +A   HS  T+CVCK+GLS+  LQK+LDYACGAGADC PI Q G CF P
Sbjct: 1   MAVFVLV-MILLAMAGHSSGTWCVCKEGLSEAMLQKTLDYACGAGADCGPIHQTGPCFNP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAG--TPST 120
           NTVK HCSYAVNS+FQ+KGQ  G+CDF+GTA  S S P+  + C +P+S S +G  TP T
Sbjct: 61  NTVKSHCSYAVNSFFQKKGQSLGTCDFAGTATFSASDPSYTT-CPFPASASGSGTTTPVT 120

Query: 121 TIPGTTPGTITNPSTTPPSTMTP----GITPPSTMTPGITPPS 158
           T P T   T TN   T P T+TP    G+  PS + P  T PS
Sbjct: 121 TTPSTRVPTTTN---TRPYTITPSTGGGLGIPSGINPDYTDPS 158

[Close]

BLAST of CmoCh12G000780 vs. TAIR 10
Match: AT1G13830.1 (Carbohydrate-binding X8 domain superfamily protein )

HSP 1 Score: 141.4 bits (355), Expect = 8.3e-34
Identity = 89/172 (51.74%), Postives = 111/172 (64.53%), Query Frame = 0


Query: 1   MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           M VLL   L+ ++ T+ S A YC+CKDG+ D  LQ S+DYACG  ADC+PI   G C+QP
Sbjct: 1   MKVLLGL-LLLLSLTNSSSAIYCLCKDGIGDTELQTSIDYACGTLADCNPIHDKGTCYQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAG-ASGCVYPSSPSNAGTPSTT 120
           +T+K HC +AVNSYFQ   QV GSC+FSGTA  + +PP+  A+GC+YPSSPS+  +P +T
Sbjct: 61  DTIKSHCDWAVNSYFQNAAQVPGSCNFSGTATTNPNPPSNLANGCIYPSSPSSTRSPPST 120

Query: 121 IP--GTTP--GTITNPSTTPPSTMTPGITPPSTMTPGITPPSVFGGGISPTG 168
            P  GTTP  GT   P T  P T  PG TPP     G+  PS  G G S  G
Sbjct: 121 TPPTGTTPTNGTTPFPGTPFPGTPFPG-TPPVFGPTGVFNPSNPGSGASSLG 170

[Close]

BLAST of CmoCh12G000780 vs. TAIR 10
Match: AT2G03505.1 (Carbohydrate-binding X8 domain superfamily protein )

HSP 1 Score: 136.3 bits (342), Expect = 2.7e-32
Identity = 77/145 (53.10%), Postives = 99/145 (68.28%), Query Frame = 0


Query: 4   LLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQPNTV 63
           LL   L  +A T++S ATYC+C+DG+ ++ LQ S+DYACG   DC+PI + G C+QPNT+
Sbjct: 3   LLLSLLFLLALTTYSSATYCLCRDGVGEKDLQTSIDYACGVLKDCNPIHEKGPCYQPNTI 62

Query: 64  KDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQS-PPAGASGCVYPSSPSNAGTPSTTIPG 123
           K HC +AVN+YFQR GQ+ GSC+FSGTA  SQ+ P    +GC+YPSSP +AGT  TT  G
Sbjct: 63  KSHCDWAVNTYFQRFGQISGSCNFSGTATTSQNLPSTVVTGCLYPSSPGSAGTTPTT--G 122

Query: 124 TTPGTITNPSTTPPSTMTPGITPPS 148
           T  GT T P   PP+    G   PS
Sbjct: 123 TPSGTQTFPG--PPAFGPAGDFDPS 143

[Close]

BLAST of CmoCh12G000780 vs. TAIR 10
Match: AT5G61130.1 (plasmodesmata callose-binding protein 1 )

HSP 1 Score: 121.3 bits (303), Expect = 8.8e-28
Identity = 83/197 (42.13%), Postives = 113/197 (57.36%), Query Frame = 0


Query: 5   LFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQPNTVK 64
           L  SL+ ++   HS A++CVCK GLSD  LQ +LDYACG GADC+P      CF P+ V+
Sbjct: 4   LVLSLLLLSLAGHSSASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVR 63

Query: 65  DHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTIPGTT 124
            HC+YAVNS+FQ+KGQ  GSC+F GTA  + S P+  +GC +P+S S +   +T  PGT 
Sbjct: 64  SHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPS-YTGCAFPTSASGSSGSTTVTPGT- 123

Query: 125 PGTITNPSTTPPSTMTPGITPPSTMTPGITPPSVFGGGISPTGGVGLGGSGSSMDGSAAI 184
               TNP  +P +T  PG    S  + G     VFGG  S  G  G G +      S+A 
Sbjct: 124 ----TNPKGSPTTTTLPGSGTNSPYS-GNPTNGVFGGN-STGGTTGTGINPDYTTDSSAF 183

Query: 185 AAAACNMLLLFIAIVTS 202
           A    + L + + ++ S
Sbjct: 184 ALKNSSKLFICLLLIAS 192

[Close]

BLAST of CmoCh12G000780 vs. TAIR 10
Match: AT1G69295.1 (plasmodesmata callose-binding protein 4 )

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-26
Identity = 82/187 (43.85%), Postives = 111/187 (59.36%), Query Frame = 0


Query: 1   MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           M+VLL   L+   FT +S A YC+CK+G ++Q LQK++DYACG GADC+ I   G C+QP
Sbjct: 1   MSVLLPLCLIISMFT-YSNAAYCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTI 120
           NTVK+HC  AVNSY+Q+K     +CDF+G A  S +PP+ AS C+  SS S  GTP+T  
Sbjct: 61  NTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPPSTASNCLTGSSSS--GTPTTGT 120

Query: 121 PGTTPGTITNPSTTPPSTMTPGITPPSTMTPGI------TPPSVFGGGISPTGGVGLGGS 180
           P T   T   P+T  P+T TP    P++ TP        TP +    G+  + G+    S
Sbjct: 121 PTTGTPTSGTPTTGTPTTGTPTTGTPTSGTPTSGFPNTGTPNTGTNTGMPNSNGMPTSSS 180

Query: 181 GSSMDGS 182
            S   G+
Sbjct: 181 SSVFPGT 183

The following BLAST results are available for this feature:

BLAST of CmoCh12G000780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ86	6.8e-33	53.99	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana OX=3702 GN=PDCB3...	[more]
Q9FNQ2	1.2e-26	42.13	PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1...	[more]
Q93V72	3.1e-25	43.85	PLASMODESMATA CALLOSE-BINDING PROTEIN 4 OS=Arabidopsis thaliana OX=3702 GN=PDCB4...	[more]
Q9SD84	5.8e-24	41.38	PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2...	[more]
Q9FZD0	2.4e-22	44.26	Carbohydrate-binding X8 domain-containing protein OS=Arabidopsis thaliana OX=370...	[more]

BLAST of CmoCh12G000780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GIL3	2.5e-102	100.00	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KUG1	1.0e-100	98.52	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A5A7V8S9	4.2e-70	78.11	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BDH0	4.2e-70	78.11	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A0A0KDN8	8.0e-69	76.62	X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G366460 PE=4 SV=...	[more]

BLAST of CmoCh12G000780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18650.1	4.8e-34	53.99	plasmodesmata callose-binding protein 3	[more]
AT1G13830.1	8.3e-34	51.74	Carbohydrate-binding X8 domain superfamily protein	[more]
AT2G03505.1	2.7e-32	53.10	Carbohydrate-binding X8 domain superfamily protein	[more]
AT5G61130.1	8.8e-28	42.13	plasmodesmata callose-binding protein 1	[more]
AT1G69295.1	2.2e-26	43.85	plasmodesmata callose-binding protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012946	X8 domain	SMART	SM00768	X8_cls	coord: 21..106 e-value: 6.2E-40 score: 148.7
IPR012946	X8 domain	PFAM	PF07983	X8	coord: 22..92 e-value: 2.6E-21 score: 76.1
None	No IPR available	GENE3D	1.20.58.1040		coord: 16..110 e-value: 2.2E-10 score: 42.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..137
None	No IPR available	PANTHER	PTHR31044:SF95	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-LIKE ISOFORM X1	coord: 1..198
IPR044788	Carbohydrate-binding X8 domain-containing protein, plant	PANTHER	PTHR31044	BETA-1,3 GLUCANASE	coord: 1..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G000780.1	CmoCh12G000780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0016740	transferase activity