CmoCh12G000550 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G000550
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionF-box/kelch-repeat protein
LocationCmo_Chr12: 281729 .. 285441 (-)
RNA-Seq ExpressionCmoCh12G000550
SyntenyCmoCh12G000550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGAAATCGACGCCTTCTTTTTTCCCCTCCACTCGTATTTCTTCACCAAAAGCAGAAGGAAATCCGAGGTCCAAGGTTCACGGAATTGCAGCAAACCGTGGAAAGTGAAATCCAGGTAGAGTTTGATTGTTGTTGTTCTAAGAGAAGCGCGCTAATGGCTTCCACAAGTTTTGTTTGTGGTAATTCCTCTGAATAATGTTCGTAAAGAGCATTGTCAACCAAAATCGCTCGTCTCTGTCACTTGGAATCCAAATGCGATCGATGTGGTTGTGTGGTAACGGCAACGCAATCGATGCGAATCAATAGTCCAGCTTAAGCCACGTTTACTCGACCTCAAATTTAATATCTCCAAATATTATTAATTGTCCACCAATGTAATTTAATGAATGATCGCGTTTATAATCAACATATGAATCGTATGTATTTATAATCAAATAATACTCTCCTTCATCTCGATAAAGCCTTTTGAGAAGCCCAAACAAAACCATGAGAGCTTATGCTCAAAATGGACAATATCATACCATTATGGAGAGTCGTGTTCATCTAACATGGTATCAGAGTCATCCTAAACTTAGTCGTGCCAATAGATCGGTGAATCCTCAAATGTCAAACAAAGGACTTTAAAAGAAAAGGAGTCGAGGCTCCTCGGTGCCAATATAGATTGGTGAATCTTCAAATTGCCAATATAGATTGGTGAATCTTCAAATGTTAAACAAAGGACTCCAAAAGAAAAGGAGGAGTTGAGGCTTCTCAAGGCATAGTAAAAAAATGACAAAGACTCCAAAAGAAAAAAAATGAGTCGAGCCTCGATTAAGAGGAGACGTACTTTGTTCGAGGGGAGGTGTTGGATGATGAAAGTCCTACATTGGCGCTAATTTAGGGAATGATCATGAGTTTATAATCAAATAATACTCTCTCCATCGGTATTAGACATTTTGGGGCAAACCGATGAGAGTTTATGCTTAAAGTGGACAATATGATACAATTGTGGAGAGTCGTGTTATCCAGTTATAACTCTAGAAAGTTTAATTTTGAACTACATGTAAAATATAAAATATTATTAAAATAGTTATGATTTCACCGTTTAAAATGGAATGAAATTAATTAAAATAAGAGGAAAACTGTTGGCTAATAAAGTAGGTTAAATAAATTAAGGATGGTTGTTTGGATAAAATTAGTATATTTTAAGGAAGAAAGTCCAATTTGGGAGGTATAAATCGTTGAAGCCATAAATAAAGTGATTATTTGTCTAATTAAGTAATTATTGCCCAACTTGCCGTCCCTCCTCTTATTTTCTTCATTTCCTTTTTGACTTTTTCCCCCATTATGAATGACATTTGTTGATATTGAGTTAGGGGCAATTTTGTAATGTTACCCTCCAATTATTGAATGAAATAAAACTATATATATATATATATAATATATGATCCTCTATTTCCATTTGAGGGAAATTCTTGAAATTGGTATTTTAATTATTTTATAACCTAATGTTTTTCTTCTTGAATAATTATTTAATTGAATCCCTAACCAAATTTTTATTCATTTAAGATTTTCTAGAATTTAAATGGGTAAATTACACGAGAAAATAAATATGCCATATAAATTCACTTATTTTTAAAAACGTTTTATTAATTTTCAACGAATTTTCTGAGCAATATTCCAACTTATCGTATTTAAAAAAAATCATTGATTTAGGAATAATAGCTAAATAAGTGGAAATAGAAAATTTATTAAAAAAATTAATAAAAATAATTAAAATATGGTCACGATGAGGAGTATTTTCATAAAATTATATATTTATTTGGAAATTGTATTGCAAAATATTATTTTACTAATTTAATTTTTGGTTAGTTGTAAAAATTGTTTGAGCTTTCCGAAATTACTAAATTAATCTCATGATTAAAGAAAGTTTAATTGGAGATTAAGGTTAAAAATAAGATAATAAAATTAGAAACAGGTAATTAATTAATTAAGTTGTTTTATTTCGCTAATTCCTTAATTCGGGGGAACACAAAAGACGACAATTATCGTCTCCTTCGTGTCTTGGCGAGCAATTGCGCGGAAAATCTCATTCTGACGTGGTCCGGTTCTGTCAGTTTTATCCTTTTCTTTTTTTTTTTTTCATTCCTATTTTTGGTTCTCTATAAATCTTCTTCAATCTCAGCCCCACCCTAGAGACCAACCACATCTTCTTCATTTTTTTCAAATCTCTCAACAACCCTCTTTGCTGCTGCTGCTGCTGCTTCTGCCGCCTCTCTGGTAATCTTCTCTTTCTGATCTTGAATCTGCTGTATTGATTATGTTCTTTTTTTTTTCCGCTTTCGATTCCGGCTTGTGTTTGCTGCAGATCTGGTGGTATTTTCTTTTATTTTCTGTTTTAGATCAGTTTACTTCACTGGATCTTTGTATCCATGGAGTTTGGATTTGTGTGATTCTTGTTTGTAATTTTTTGGAGGCGGGGGGTGAAGTGGCTTCTTTTTGTACTTCGTAGCTGTGCAGCTTGTTAAATCCTATGCAATGCTGTGTTGTTGTGTTTATGCGGCTGTTTATGCTTTGCCATTGTTTTGTTTGCTCTAGATTCTGCTGTTCATCGTTTTGCTAGGGTCTTGAATTGTCGGCTCAATTTCTGAGTTCAGTGTTCATGTATCTATATCGTTTTTTATGGTTGTGATTTTGATGCGATGGAAGTTTTGTTGGTCTTTGAGAACGAACAGCTTAACTTTTCCTGGTTCATCTTGTTTTTTCGCGATTCTATAATGTTGAGGGATTCTTTTACTTTTATTCAATTTTTGAGTTCAGTGTCTGTGTAGAAGATTAATTGACTTCAGATCCGGTTGAAGAGCTGTTTTCTTGTACCCTCTTGAAGGTGACTGTTGGACCCAACTTGTTGGCTGCTTTGCTTGTATTTCCCTCCATATCTCTGCTAAGCTCGGCTTCTATCTGCTTCATTATGAAGAAGCTGCTGAGATATTTACTGTCACTTTGTTCGGCATCGCCATTCTCACCCTTCGAATACTGAATAAGAACACGTGTCAAACCCAATACTCGGTGTTTGACGAGTCTTTTTGGCCCATGCATGTGTCGCTTGTTTGTGCATCTTCTATTATTTTTTGTTTCTCCTTCTACCTCTGTTGAAAGATAAGCTCAAATGATATGAACTCGTTTTGGTTTTATATCCTTTTTTCATATCATTTTAAGCTTGGACCTTATAATTCTTGTGATCTGGGACTTAAAGTAATAATCAACCGATTTGTATTTGCCTTTGATATTAAGCGTGTAATCTTTATGACTTTCCATATTTCAGACTTTCAGTTTCTCTCTATTTTCAAATGGAAGTCATGGGGGGCTAACTTGGCGAGTTCTATGGCCTTGACTGGTATGTTTTTCTTTCAAATCTGACACTGTGCATACATGCTCATCGGCTGTCACTTTCACGAGAACTTGGGTTATAAGCTTTATGCTGCACGATGTGTAGGTATTTTGGCAATGCATAGAGAAAGAGGGAACTCTATAAAGTTGCAGAGCATCACTCATACTGCCATATCTAGTAAATATAATCGTGAGTTTTCTGGCATGGACTTTGAATCAGATTGGACAAGACACAGAAAGTCCTCTGCATTTGCTGCTCAAGTGATCCGTTCTGCAACTTCCTTTATGCCTTGGTCTTGCAGAATCCCAATTAGTAAAGGATATCACGAATTTCTTTAA

mRNA sequence

ATGAACAGAAATCGACGCCTTCTTTTTTCCCCTCCACTCGTATTTCTTCACCAAAAGCAGAAGGAAATCCGAGGTCCAAGGTTCACGGAATTGCAGCAAACCGTGGAAAGTGAAATCCAGGTAGAGTTTGATTGTTGTTGTTCTAAGAGAAGCGCGCTAATGGCTTCCACAAGTTTTGTTTGTGACTTTCAGTTTCTCTCTATTTTCAAATGGAAGTCATGGGGGGCTAACTTGGCGAGTTCTATGGCCTTGACTGGTATTTTGGCAATGCATAGAGAAAGAGGGAACTCTATAAAGTTGCAGAGCATCACTCATACTGCCATATCTAGTAAATATAATCGTGAGTTTTCTGGCATGGACTTTGAATCAGATTGGACAAGACACAGAAAGTCCTCTGCATTTGCTGCTCAAGTGATCCGTTCTGCAACTTCCTTTATGCCTTGGTCTTGCAGAATCCCAATTAGTAAAGGATATCACGAATTTCTTTAA

Coding sequence (CDS)

ATGAACAGAAATCGACGCCTTCTTTTTTCCCCTCCACTCGTATTTCTTCACCAAAAGCAGAAGGAAATCCGAGGTCCAAGGTTCACGGAATTGCAGCAAACCGTGGAAAGTGAAATCCAGGTAGAGTTTGATTGTTGTTGTTCTAAGAGAAGCGCGCTAATGGCTTCCACAAGTTTTGTTTGTGACTTTCAGTTTCTCTCTATTTTCAAATGGAAGTCATGGGGGGCTAACTTGGCGAGTTCTATGGCCTTGACTGGTATTTTGGCAATGCATAGAGAAAGAGGGAACTCTATAAAGTTGCAGAGCATCACTCATACTGCCATATCTAGTAAATATAATCGTGAGTTTTCTGGCATGGACTTTGAATCAGATTGGACAAGACACAGAAAGTCCTCTGCATTTGCTGCTCAAGTGATCCGTTCTGCAACTTCCTTTATGCCTTGGTCTTGCAGAATCCCAATTAGTAAAGGATATCACGAATTTCTTTAA

Protein sequence

MNRNRRLLFSPPLVFLHQKQKEIRGPRFTELQQTVESEIQVEFDCCCSKRSALMASTSFVCDFQFLSIFKWKSWGANLASSMALTGILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL
Homology
[Close]
BLAST of CmoCh12G000550 vs. ExPASy TrEMBL
Match: A0A0A0KD56 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365200 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.7e-35
Identity = 85/120 (70.83%), Postives = 94/120 (78.33%), Query Frame = 0 

Query: 43  FDCCCSKRSALMASTSFVCDFQFLSIFKWKSWGANLASSMALTGILAMHRERGNSIKLQS 102
           +D CC+   A + +  F+  F F   F WK WGANLASSMALTGIL MHR R + IKLQ+
Sbjct: 96  WDTCCNFVHACI-TCLFMRTFSF-PFFIWKLWGANLASSMALTGILTMHRGRDSPIKLQN 155

Query: 103 ITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL 162
           ITHTA SSK+ REF GMDFESDWTRH KSSAFAA VIRSATSFM WSCRIPIS+GYHEFL
Sbjct: 156 ITHTATSSKHKREF-GMDFESDWTRHVKSSAFAAPVIRSATSFMRWSCRIPISEGYHEFL 212

[Close]
BLAST of CmoCh12G000550 vs. ExPASy TrEMBL
Match: A0A5A7VCL2 (F-box/kelch-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00410 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 63/77 (81.82%), Postives = 65/77 (84.42%), Query Frame = 0 

Query: 86  GILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSF 145
           GIL MHR R N  KLQ+ITHTAISSK  REF GMDFESDWTRH KSSAFAA VIRSATSF
Sbjct: 39  GILTMHRGRDNPKKLQNITHTAISSKQKREF-GMDFESDWTRHVKSSAFAAPVIRSATSF 98

Query: 146 MPWSCRIPISKGYHEFL 163
           M WSCRIPIS+GY EFL
Sbjct: 99  MRWSCRIPISEGYQEFL 114

[Close]
BLAST of CmoCh12G000550 vs. ExPASy TrEMBL
Match: A0A5J5ASN4 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033169 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.9e-18
Identity = 52/88 (59.09%), Postives = 63/88 (71.59%), Query Frame = 0 

Query: 78  LASSMALTGILAMHRERGNSIKLQ---SITHTAISSKYNREFSGMDFESDWTRHRKSSAF 137
           ++S MAL    AM   R NS KL+   ++  T   +      +GMDFESDWT+HRKSSAF
Sbjct: 1   MSSCMALADTWAMCGGRNNSGKLEIDITLDRTTKKNYLRDRTTGMDFESDWTKHRKSSAF 60

Query: 138 AAQVIRSATSFMPWSCRIPISKGYHEFL 163
            A+VIRSATSFMPWSC+IPIS+GYHEFL
Sbjct: 61  TAEVIRSATSFMPWSCKIPISEGYHEFL 88

[Close]
BLAST of CmoCh12G000550 vs. ExPASy TrEMBL
Match: A0A5J5AWB6 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033166 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-17
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 0 

Query: 78  LASSMALTGILAMHRERGNSIKLQ---SITHTAISSKYNREFSGMDFESDWTRHRKSSAF 137
           ++SSMAL    AM   R NS KL+   ++  T   +      + MDFESDWT+HRKSSAF
Sbjct: 1   MSSSMALADTWAMCGGRNNSGKLEIDITLDRTTKKNYLRNRTTDMDFESDWTKHRKSSAF 60

Query: 138 AAQVIRSATSFMPWSCRIPISKGYHEFL 163
            A+VIRSATSFMPWSC+IPI +GYHEFL
Sbjct: 61  TAEVIRSATSFMPWSCKIPICEGYHEFL 88

[Close]
BLAST of CmoCh12G000550 vs. ExPASy TrEMBL
Match: A0A444WZZ5 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g066056 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.0e-15
Identity = 46/87 (52.87%), Postives = 61/87 (70.11%), Query Frame = 0 

Query: 78  LASSMALTGILAMHR--ERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFA 137
           L SSMA T + AM +   + +S++  S+T    S+  +     M+FESDWT+HRKSSA+ 
Sbjct: 2   LPSSMAYTDLWAMCKGGYKFSSLRNNSLTKINQSNHSSSRTCVMEFESDWTKHRKSSAYT 61

Query: 138 AQVIRSATSFMPWSCRIPISKGYHEFL 163
           A VIRSATS +PWSCR+PI +GYHEFL
Sbjct: 62  AHVIRSATSILPWSCRVPIGEGYHEFL 88

The following BLAST results are available for this feature:
BLAST of CmoCh12G000550 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh12G000550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KD562.7e-3570.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365200 PE=4 SV=1[more]
A0A5A7VCL21.3e-2481.82F-box/kelch-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A5J5ASN43.9e-1859.09Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033169 PE=4 SV=1[more]
A0A5J5AWB61.5e-1757.95Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033166 PE=4 SV=1[more]
A0A444WZZ59.0e-1552.87Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g066056 PE=4 SV=1[more]
BLAST of CmoCh12G000550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G000550.1CmoCh12G000550.1mRNA